Hi Chris,
Take a look at this file :
lib/galaxy/jobs/runners/drmaa.py
in your galaxy directory.
You can export a path for binaries here. For example :
export PATH=$PATH:/opt/bin/
before export PYTHONPATH
Moreover, do not forget other path values in your service script or in your
galaxy user profile.
Hope this help.
2011/8/23 Roman Valls brainst...@nopcode.org
Did you adjust the SGE_ROOT environment variable to point to the
libdrmaa for SGE (probably /opt/sge_62u5_gr/bin/lx24-amd64) ?
This is of course just a guess, could you please provide some error
messages/logs ?
Cheers,
Roman
On 2011-08-23 10:20, Chris Cole wrote:
BUMP
Does anyone have any idea on this? Our Galaxy is currently out of action
until this is sorted.
Thanks,
Chris
On 22/08/11 10:08, Chris Cole wrote:
Hi,
Following a recent update to our SGE, DRMAA is failing to load in
galaxy. The reason being that the path has changed. How do I change the
path for galaxy to find the libdrmaa module?
Cheers,
Chris
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