Hi Brad,
(cc-ing the list)
I'm more interested in the merging part, and after a quick search on the
toolshed, there are no tools to merge reads. Seems that there is a need for a
read merger wrapper then...
Lionel
On 14 Oct 2013, at 13:46 , Langhorst, Brad langho...@neb.com wrote:
I would also like to see a seqprep wrapper…
if you need something sooner, cutdadapt is already wrapped and i'm pretty
sure there is an existing tool to merge reads as well.
Brad
--
Brad Langhorst
Applications and Product Development Scientist
On Oct 14, 2013, at 6:59 AM, Lionel Guy guy.lio...@gmail.com
wrote:
Hi,
I'm interested in a wrapper for SeqPrep:
https://github.com/jstjohn/SeqPrep
Anyone preparing one/aware of someone preparing one? Otherwise I'll put one
together.
From its description: SeqPrep is a program to merge paired end Illumina
reads that are overlapping into a single longer read. It may also just be
used for its adapter trimming feature without doing any paired end overlap.
Cheers,
Lionel
Lionel Guy
Uppsala University
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Lionel Guy
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