Hi Ido Tamir,
I have the same question too. I set "megablast" as "long_jobs" for the
test,when I cancel my megablast job in Galaxy history before it finishs,it
still work in my background.The drmaa_external_killer.py seems doesn't work.I
don't know where is the problem,and hope someone can help me .
a) In my advanced example I have:
walltime=72:00:00,nodes=2:ppn=8,mem=16G
scripts/drmaa_external_runner.py
scripts/drmaa_external_killer.py
scripts/external_chown_script.py
b)In my background,I get the "qstat" result :
Job idName UserTime Use S Queue
- --- - -
46.server ...n...@genomics.cn galaxy 00:00:00 R batch
shenwiyn
From: Ido Tamir
Date: 2013-07-23 21:53
To: galaxy-dev@lists.bx.psu.edu
Subject: [galaxy-dev] job_conf.xml questions
Hi,
I work myself through the job_conf.xml and have a question:
a)
In your advanced example you have:
scripts/drmaa_external_runner.py
scripts/drmaa_external_killer.py
scripts/external_chown_script.py
Does this mean that remote_cluster jobs can not be killed unless I add the 3
scripts to this destination?
Or does this have to do with the "run jobs as real user" that I don't need
currently. I am using the galaxy user for all jobs for the moment?
To phrase this differently: Do I need these three scripts?
b)
Can I set a wall time limit for only for my local runners?
like:
walltime=72:00:00
When I set it in limits, will it work for local runners and then I have to
override it in
every destination?
thank you very much,
ido
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