Re: [galaxy-dev] Exporting Importing Tool Shed repository is just great!
On Mon, Mar 3, 2014 at 6:33 PM, Greg Von Kuster g...@bx.psu.edu wrote: On Mar 3, 2014, at 1:13 PM, Peter Cock p.j.a.c...@googlemail.com wrote: Hi Guys, Is this stuff on the wiki? Not completely yet. The only mention I found was something in passing on last month's news page: https://wiki.galaxyproject.org/DevNewsBriefs/2014_02_10 Presumably the goal is helping to move repositories between Tool Shed instances (e.g. from a development/private Tool Shed to a production/public Tool Shed)? Yes. How do these capsules differ from the standard tar-ball? Is it effectively the tar-ball contents plus the repository meta data like its description and keywords? If so, would this mean a capsule can only be used one at import (but cannot be used to update a Tool Shed repository with a newer version of the source repository)? I can see Import repository capsule as a new action at the bottom of the left hand column (under Create new repository). Is there an Export repository capsule entry somewhere? I can see a Export this revision action on each repository, is that it? Yes. Would it make sense to rename it to Export capsule for this revision or something more explicit with the word capsule in the name? (I'm not sure how long these action names can be, but this is a little change which would help link the action to the corresponding Import repository capsule menu.) Regards, Peter ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Exporting Importing Tool Shed repository is just great!
On Tue, Mar 4, 2014 at 2:38 PM, Greg Von Kuster g...@bx.psu.edu wrote: Hi Peter, On Mar 4, 2014, at 5:19 AM, Peter Cock p.j.a.c...@googlemail.com wrote: On Mon, Mar 3, 2014 at 6:33 PM, Greg Von Kuster g...@bx.psu.edu wrote: On Mar 3, 2014, at 1:13 PM, Peter Cock p.j.a.c...@googlemail.com wrote: Hi Guys, Is this stuff on the wiki? Not completely yet. The only mention I found was something in passing on last month's news page: https://wiki.galaxyproject.org/DevNewsBriefs/2014_02_10 Unfortunately I was not able to complete my usual level of documentation in the Tool Shed wiki for inclusion in the Galaxy News Brief for the last release (my plate was too full at the time). I've introduced the feature in the following article - this is the venue I will use going forward for the Tool Shed. http://gregvonkuster.org/galaxy-tool-shed-primary-repository-features/ I thought I'd already subscribed to your blog, but evidently hadn't (or there was a glitch). Done now :) I would however very much like to see at least a stub entry on the wiki about the import/export of capsules (linking to the blog) so it can be found by searching the wiki. Peter ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Exporting Importing Tool Shed repository is just great!
Many thanks, Björn for your very kind words. The Tool Shed would not be what it is without your hard work as well. We hoped the export/import capsule feature would be beneficial, so it's great to hear confirmation that it is. Also, please don't hesitate to continue to contact us with newly discovered issues! Greg Von Kuster On Mar 3, 2014, at 12:02 PM, Björn Grüning bjoern.gruen...@gmail.com wrote: Hi Tool Shed Team! I know I'm always finding bugs and keeping you busy, but this mail is different! The Tool Shed exporting and importing feature is just great, its save so much time and is a pleasure to use. Everyone should try it! So thanks for the hard work you all put into the Tool Shed over the last month. I really enjoy to put my tools into it! Thanks, Bjoern ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Exporting Importing Tool Shed repository is just great!
Hi Guys, Is this stuff on the wiki? Presumably the goal is helping to move repositories between Tool Shed instances (e.g. from a development/private Tool Shed to a production/public Tool Shed)? I can see Import repository capsule as a new action at the bottom of the left hand column (under Create new repository). Is there an Export repository capsule entry somewhere? I can see a Export this revision action on each repository, is that it? Thanks, Peter On Mon, Mar 3, 2014 at 5:58 PM, Greg Von Kuster g...@bx.psu.edu wrote: Many thanks, Björn for your very kind words. The Tool Shed would not be what it is without your hard work as well. We hoped the export/import capsule feature would be beneficial, so it's great to hear confirmation that it is. Also, please don't hesitate to continue to contact us with newly discovered issues! Greg Von Kuster On Mar 3, 2014, at 12:02 PM, Björn Grüning bjoern.gruen...@gmail.com wrote: Hi Tool Shed Team! I know I'm always finding bugs and keeping you busy, but this mail is different! The Tool Shed exporting and importing feature is just great, its save so much time and is a pleasure to use. Everyone should try it! So thanks for the hard work you all put into the Tool Shed over the last month. I really enjoy to put my tools into it! Thanks, Bjoern ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Exporting Importing Tool Shed repository is just great!
On Mar 3, 2014, at 1:13 PM, Peter Cock p.j.a.c...@googlemail.com wrote: Hi Guys, Is this stuff on the wiki? Not completely yet. Presumably the goal is helping to move repositories between Tool Shed instances (e.g. from a development/private Tool Shed to a production/public Tool Shed)? Yes. I can see Import repository capsule as a new action at the bottom of the left hand column (under Create new repository). Is there an Export repository capsule entry somewhere? I can see a Export this revision action on each repository, is that it? Yes. Thanks, Peter On Mon, Mar 3, 2014 at 5:58 PM, Greg Von Kuster g...@bx.psu.edu wrote: Many thanks, Björn for your very kind words. The Tool Shed would not be what it is without your hard work as well. We hoped the export/import capsule feature would be beneficial, so it's great to hear confirmation that it is. Also, please don't hesitate to continue to contact us with newly discovered issues! Greg Von Kuster On Mar 3, 2014, at 12:02 PM, Björn Grüning bjoern.gruen...@gmail.com wrote: Hi Tool Shed Team! I know I'm always finding bugs and keeping you busy, but this mail is different! The Tool Shed exporting and importing feature is just great, its save so much time and is a pleasure to use. Everyone should try it! So thanks for the hard work you all put into the Tool Shed over the last month. I really enjoy to put my tools into it! Thanks, Bjoern ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
