Re: [galaxy-dev] change dataset label in exec_after_process()
Hi again, Sorry that I didn't know before, it seems like the label is the the object attribute 'name' programmatically, but even if I set this in exec_before_job(), exec_before_process(), exec_after_process() it doesn't change the dataset name even after refreshing my history. Has anyone had success setting dataset label/name and other attributes using one of the custom code hook functions?? thanks, leandro On Thu, Jun 23, 2011 at 3:27 PM, Leandro Hermida soft...@leandrohermida.com wrote: Hi everyone, Is it possible to change dataset labels in exec_after_process() ? best, Leandro ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] change dataset label in exec_after_process()
I used to use the post job hook but I think it's a lot cleaner to use
the label option - eg where I want the output name based on a user
supplied text string out_prefix, something like:
outputs
data format=html name=html_file label=${out_prefix}.html/
/outputs
works for me and avoids the need to have a post execution hook code file.
On Fri, Jun 24, 2011 at 6:02 PM, Leandro Hermida
soft...@leandrohermida.com wrote:
Hi again,
Sorry that I didn't know before, it seems like the label is the the object
attribute 'name' programmatically, but even if I set this in
exec_before_job(), exec_before_process(), exec_after_process() it doesn't
change the dataset name even after refreshing my history.
Has anyone had success setting dataset label/name and other attributes using
one of the custom code hook functions??
--
Ross Lazarus MBBS MPH;
Associate Professor, Harvard Medical School;
Director of Bioinformatics, Channing Lab; Tel: +1 617 505 4850;
Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444;
___
Please keep all replies on the list by using reply all
in your mail client. To manage your subscriptions to this
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Re: [galaxy-dev] change dataset label in exec_after_process()
Hi Ross,
I agree, normally I use the label= xml tag when possible, but the reason I
ask this question is because I have a tool where the number of output
datasets cannot be determined until the tool is run (a la
https://bitbucket.org/galaxy/galaxy-central/wiki/ToolsMultipleOutput) and I
really would like to change the dataset labels/names of what is produced.
Could you provide some insight as to how you get it to work with one of the
hooks? You might have seen in another post I made yesterday, when I try even
just a simple example using exec_before_job() I get some strange error :-/
thanks again,
leandro
On Fri, Jun 24, 2011 at 10:09 AM, Ross ross.laza...@gmail.com wrote:
I used to use the post job hook but I think it's a lot cleaner to use
the label option - eg where I want the output name based on a user
supplied text string out_prefix, something like:
outputs
data format=html name=html_file label=${out_prefix}.html/
/outputs
works for me and avoids the need to have a post execution hook code file.
On Fri, Jun 24, 2011 at 6:02 PM, Leandro Hermida
soft...@leandrohermida.com wrote:
Hi again,
Sorry that I didn't know before, it seems like the label is the the
object
attribute 'name' programmatically, but even if I set this in
exec_before_job(), exec_before_process(), exec_after_process() it doesn't
change the dataset name even after refreshing my history.
Has anyone had success setting dataset label/name and other attributes
using
one of the custom code hook functions??
--
Ross Lazarus MBBS MPH;
Associate Professor, Harvard Medical School;
Director of Bioinformatics, Channing Lab; Tel: +1 617 505 4850;
Head, Medical Bioinformatics, BakerIDI; Tel: +61 385321444;
___
Please keep all replies on the list by using reply all
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
http://lists.bx.psu.edu/
