[galaxy-dev] follow up question regarding the 'toolform-upgrade'

2015-04-29 Thread Hans-Rudolf Hotz

Hi all


We just need some confirmation before we fix our tools:

We have several local tools, where the input is a list of (gene)names 
with the following xml syntax:



param name=genenames type=text area=true size=5x20 label=gene 
names help=(one per line)/


so far this, assuming you enterred:

foo
bar

produced a string like:

foo__crcn__bar__crcn__



Now, with toolform-upgrade=True, we get:

foo__cn__bar__cn__

(using firefox, with linux, Mac, and Windows)




Can anybody confirm this (before we fix all affected tools)


Thank you very much for your help
Hans-Rudolf




--



Hans-Rudolf Hotz, PhD
Bioinformatics Support

Friedrich Miescher Institute for Biomedical Research
Maulbeerstrasse 66
4058 Basel/Switzerland
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Re: [galaxy-dev] follow up question regarding the 'toolform-upgrade'

2015-04-29 Thread Björn Grüning
Hi,

I have a related question, does the text-area sanitization differentiate
between the different newline formats?

Hans-Rudolf can this be your problem?

Ciao,
Bjoern

Am 29.04.2015 um 13:55 schrieb Hans-Rudolf Hotz:
 Hi all
 
 
 We just need some confirmation before we fix our tools:
 
 We have several local tools, where the input is a list of (gene)names
 with the following xml syntax:
 
 
 param name=genenames type=text area=true size=5x20 label=gene
 names help=(one per line)/
 
 so far this, assuming you enterred:
 
 foo
 bar
 
 produced a string like:
 
 foo__crcn__bar__crcn__
 
 
 
 Now, with toolform-upgrade=True, we get:
 
 foo__cn__bar__cn__
 
 (using firefox, with linux, Mac, and Windows)
 
 
 
 
 Can anybody confirm this (before we fix all affected tools)
 
 
 Thank you very much for your help
 Hans-Rudolf
 
 
 
 
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