Hi Hans-Rudolf
It happens with a number of tools. I will need to do some more testing
to see if I can narrow it down further.
Thanks for your help
Ulf
On 26/07/16 07:13, Hans-Rudolf Hotz wrote:
> Hi Ulf
>
>
> I don't think the two things are connected which each other. In the logs
> of our local installation we see once in a while, lines like:
>
>
> File "/usr/lib64/python2.6/socket.py", line 303, in flush
> self._sock.sendall(buffer(data, write_offset, buffer_size))
> error: [Errno 32] Broken pipe
>
> but without any errors or failed jobs associated. We consider those as
> harmless, temporary glitches in the web server part of galaxy.
>
> Sorry, not much help...
>
>
> Just one question for clarification, which might help others (with more
> cloud experience) to jump in: do the failed jobs occur randomly with any
> tool? or are they all coming from the same tool?
>
>
> Regards, Hans-Rudolf
>
>
>
>
> On 07/25/2016 12:48 PM, Ulf Schaefer wrote:
>> Hi all
>>
>> Certain jobs fail on my cloud Galaxy instance with the error message in
>> the subject line. No stderr or stdout is produced by the tool, at least
>> it's not accessible from Galaxy. However the data seems to be there, in
>> so far that I can view it (clicking on the eye) and download it using
>> the floppy disk icon.
>>
>> The only thing I see (repeatedly) in my Galaxy logs is this:
>>
>>
>> Exception happened during processing of request from ('127.0.0.1', 46619)
>> Traceback (most recent call last):
>> File
>> "/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/paste/httpserver.py",
>>
>> line 1085, in process_request_in_thread
>>self.finish_request(request, client_address)
>> File "/usr/lib/python2.7/SocketServer.py", line 334, in
>> finish_request
>>self.RequestHandlerClass(request, client_address, self)
>> File "/usr/lib/python2.7/SocketServer.py", line 657, in __init__
>>self.finish()
>> File "/usr/lib/python2.7/SocketServer.py", line 716, in finish
>>self.wfile.close()
>> File "/usr/lib/python2.7/socket.py", line 283, in close
>>self.flush()
>> File "/usr/lib/python2.7/socket.py", line 307, in flush
>>self._sock.sendall(view[write_offset:write_offset+buffer_size])
>> error: [Errno 32] Broken pipe
>>
>>
>> Does this look familiar to anyone?
>>
>> Thanks very much for any input
>> Ulf
>>
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