[galaxy-user] How to do an GO enrichment analysis in Galaxy?

2012-10-07 Thread Yan He
Hi everyone,

 

I got a list of differentially expressed genes from my RNA-seq data. Is
there a tool on Galaxy that I can do the GO enrichment analysis for the
differentially expressed genes? Any help or suggestion is highly
appreciated!

 

Best regards,

Yan

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[galaxy-user] galaxyTools volume not given enough time to attach

2012-10-07 Thread Joel Rosenberg

About half the time I try to boot up my galaxy cluster in AWS, cloudman aborts 
because it could not attach the galaxyTools volume with the line:
Cannot attach volume 'vol-xx' in state 'creating'
It appears that in /cm/services/data/volume.py it tries to mount the volume 
every two seconds up to a minute and then gives up. In the AWS EC2 volume pane, 
the volume in question always eventually ends up in the state available, but 
often not in enough time and cloudman gives up.
Could you possibly 1) increase the timeout to account for variations in AWS 
service performance, 2) selectively wait longer if the state is creating or 
3) make the timeout period configurable in galaxy's settings?
If it matters, the tools snapshot is my own that I made after modifying the 
standard volume. But again, when it boots up successfully the other half of the 
time, the cluster behaves normally.
Thanks,
Joel  ___
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