Re: [galaxy-user] Installing Galaxy on a Cluster - What to do about Python

2012-11-07 Thread greg
Thanks, but I'm confused.  How will the cluster jobs galaxy submits
know to use the virtual env?

Or since all jobs are submitted as the galaxy user it will have the correct one?

-Greg

On Tue, Nov 6, 2012 at 3:12 PM, Carlos Borroto carlos.borr...@gmail.com wrote:
 On Tue, Nov 6, 2012 at 2:27 PM, greg margeem...@gmail.com wrote:
 Could anyone provide me with some basic directions on how to set it up
 with virtualenv?  I've never used it before.


 I do this by adding this to the ~/.bashrc file of the user running
 galaxy( in galaxy.fedora-init: RUN_AS=galaxy)
 source $HOME/env/bin/activate

 Hope it helps,
 Carlos
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Re: [galaxy-user] Installing Galaxy on a Cluster - What to do about Python

2012-11-06 Thread Carlos Borroto
On Tue, Nov 6, 2012 at 2:27 PM, greg margeem...@gmail.com wrote:
 Could anyone provide me with some basic directions on how to set it up
 with virtualenv?  I've never used it before.


I do this by adding this to the ~/.bashrc file of the user running
galaxy( in galaxy.fedora-init: RUN_AS=galaxy)
source $HOME/env/bin/activate

Hope it helps,
Carlos
___
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Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using reply all in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/