[gentoo-commits] gentoo-x86 commit in dev-haskell/pandoc-citeproc/files: pandoc-citeproc-0.6-ghc-7.10.patch

2015-01-10 Thread Mark Wright (gienah)
gienah  15/01/10 09:18:55

  Added:pandoc-citeproc-0.6-ghc-7.10.patch
  Log:
  Patch pandoc-citeproc for ghc 7.10.1 RC1 
https://github.com/jgm/pandoc-citeproc/pull/99
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
618E971F)

Revision  ChangesPath
1.1  
dev-haskell/pandoc-citeproc/files/pandoc-citeproc-0.6-ghc-7.10.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/pandoc-citeproc/files/pandoc-citeproc-0.6-ghc-7.10.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/pandoc-citeproc/files/pandoc-citeproc-0.6-ghc-7.10.patch?rev=1.1content-type=text/plain

Index: pandoc-citeproc-0.6-ghc-7.10.patch
===
--- pandoc-citeproc-0.6-orig/src/Text/CSL/Pandoc.hs 2014-09-22 
14:04:21.0 +1000
+++ pandoc-citeproc-0.6/src/Text/CSL/Pandoc.hs  2015-01-10 11:57:26.900041860 
+1100
@@ -201,10 +201,10 @@
 isEndPunct c - True
   (c:_) | isEndPunct c - True
 | otherwise- False
-  where isEndPunct c = c `elem` .,;:!?
+  where isEndPunct c = c `elem` (.,;:!? :: String)
 
 startWithPunct :: [Inline] - Bool
-startWithPunct = and . map (`elem` .,;:!?) . headInline
+startWithPunct = and . map (`elem` (.,;:!? :: String)) . headInline
 
 deNote :: Pandoc - Pandoc
 deNote = topDown go
@@ -324,7 +324,7 @@
   sp - option  (pSpace  return  )
   r - many1 (notFollowedBy pSpace  notFollowedBy pLocatorPunct  anyToken)
   let s = stringify r
-  guard $ any isDigit s || all (`elem` IVXLCM) s
+  guard $ any isDigit s || all (`elem` (IVXLCM :: String)) s
   return $ punct ++ sp ++ s
 
 pDigit :: Parsec [Inline] st ()
--- pandoc-citeproc-0.6-orig/src/Text/CSL/Proc.hs   2014-09-22 
14:04:21.0 +1000
+++ pandoc-citeproc-0.6/src/Text/CSL/Proc.hs2015-01-10 11:56:18.797456065 
+1100
@@ -288,7 +288,7 @@
 case ys of
  Formatted [] - xs
  Formatted (Note _ : _) - xs  ys
- Formatted (Str [c]:_) | c `elem` , ;: - xs  ys
+ Formatted (Str [c]:_) | c `elem` (, ;: :: String) - xs  ys
  _ - xs  Formatted [Space]  ys
   formatAuth   = formatOutput . localMod
   formatCits   = (if isNote then toNote else id) .
@@ -328,7 +328,7 @@
 | otherwise= id
 where
   isPunct' [] = False
-  isPunct' xs = all (`elem` .,;:!? ) xs
+  isPunct' xs = all (`elem` (.,;:!?  :: String)) xs
   check o = case cleanOutput o of
   [] - ONull
   x  - case trim' x of
--- pandoc-citeproc-0.6-orig/src/Text/CSL/Eval/Names.hs 2014-09-22 
14:04:21.0 +1000
+++ pandoc-citeproc-0.6/src/Text/CSL/Eval/Names.hs  2015-01-10 
11:55:41.839119783 +1100
@@ -1,4 +1,4 @@
-{-# LANGUAGE PatternGuards #-}
+{-# LANGUAGE PatternGuards, FlexibleContexts #-}
 -
 -- |
 -- Module  :  Text.CSL.Eval.Names
--- pandoc-citeproc-0.6-orig/src/Text/CSL/Eval.hs   2014-09-22 
14:04:21.0 +1000
+++ pandoc-citeproc-0.6/src/Text/CSL/Eval.hs2015-01-10 11:55:23.090597159 
+1100
@@ -1,4 +1,4 @@
-{-# LANGUAGE PatternGuards #-}
+{-# LANGUAGE PatternGuards, FlexibleContexts #-}
 -
 -- |
 -- Module  :  Text.CSL.Eval
--- pandoc-citeproc-0.6-orig/src/Text/CSL/Parser.hs 2014-09-22 
14:04:21.0 +1000
+++ pandoc-citeproc-0.6/src/Text/CSL/Parser.hs  2015-01-10 11:54:59.755477862 
+1100
@@ -144,7 +144,7 @@
 
 parseCslTerm :: Cursor - CslTerm
 parseCslTerm cur =
-let body = unpack $ T.dropAround (`elem`  \t\r\n) $
+let body = unpack $ T.dropAround (`elem` ( \t\r\n :: String)) $
   T.concat $ cur $/ content
 in CT
   { cslTerm= stringAttr name cur
--- pandoc-citeproc-0.6-orig/src/Text/CSL/Style.hs  2014-09-22 
14:04:21.0 +1000
+++ pandoc-citeproc-0.6/src/Text/CSL/Style.hs   2015-01-10 11:53:23.641828264 
+1100
@@ -130,7 +130,7 @@
   -- this is needed for versions of pandoc that don't turn
   -- a span with font-variant:small-caps into a SmallCaps element:
   where handleSmallCapsSpans (Span (,[],[(style,sty)]) ils)
-| filter (`notElem`  \t;) sty == font-variant:small-caps =
+| filter (`notElem` ( \t; :: String)) sty == 
font-variant:small-caps =
   SmallCaps ils
 handleSmallCapsSpans x = x
 
@@ -206,15 +206,15 @@
 appendWithPunct (Formatted left) (Formatted right) =
   Formatted $
   case concat [lastleft, firstright] of
-   [' ',d] | d `elem` ,.:; - initInline left ++ right
-   [c,d] | c `elem`  ,.:;, d == c - left ++ tailInline right
-   [c,'.'] | c `elem` ,.!:;? - left ++ tailInline right
-   [c,':'] | c `elem` ,!:;? - left ++ tailInline right  -- Mich.: 2005
-

[gentoo-commits] gentoo-x86 commit in dev-haskell/pandoc-citeproc: pandoc-citeproc-0.6.ebuild ChangeLog

2015-01-10 Thread Mark Wright (gienah)
gienah  15/01/10 09:18:55

  Modified: pandoc-citeproc-0.6.ebuild ChangeLog
  Log:
  Patch pandoc-citeproc for ghc 7.10.1 RC1 
https://github.com/jgm/pandoc-citeproc/pull/99
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
618E971F)

Revision  ChangesPath
1.2  dev-haskell/pandoc-citeproc/pandoc-citeproc-0.6.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/pandoc-citeproc/pandoc-citeproc-0.6.ebuild?rev=1.2view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/pandoc-citeproc/pandoc-citeproc-0.6.ebuild?rev=1.2content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/pandoc-citeproc/pandoc-citeproc-0.6.ebuild?r1=1.1r2=1.2

Index: pandoc-citeproc-0.6.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/dev-haskell/pandoc-citeproc/pandoc-citeproc-0.6.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- pandoc-citeproc-0.6.ebuild  14 Dec 2014 08:46:43 -  1.1
+++ pandoc-citeproc-0.6.ebuild  10 Jan 2015 09:18:55 -  1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/dev-haskell/pandoc-citeproc/pandoc-citeproc-0.6.ebuild,v
 1.1 2014/12/14 08:46:43 gienah Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/dev-haskell/pandoc-citeproc/pandoc-citeproc-0.6.ebuild,v
 1.2 2015/01/10 09:18:55 gienah Exp $
 
 EAPI=5
 
@@ -8,7 +8,7 @@
 #hackport: flags: -small_base
 
 CABAL_FEATURES=bin lib profile haddock hoogle hscolour test-suite
-inherit haskell-cabal
+inherit base haskell-cabal
 
 DESCRIPTION=Supports using pandoc with citeproc
 HOMEPAGE=http://hackage.haskell.org/package/pandoc-citeproc;
@@ -46,6 +46,8 @@
=dev-haskell/cabal-1.12
 
 
+PATCHES=(${FILESDIR}/${PN}-0.6-ghc-7.10.patch)
+
 src_configure() {
# workaround bug on ghc-7.6.3:
#  [13 of 24] Compiling Text.CSL.Input.Bibtex ...



1.8  dev-haskell/pandoc-citeproc/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/pandoc-citeproc/ChangeLog?rev=1.8view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/pandoc-citeproc/ChangeLog?rev=1.8content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/pandoc-citeproc/ChangeLog?r1=1.7r2=1.8

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-haskell/pandoc-citeproc/ChangeLog,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- ChangeLog   2 Jan 2015 10:33:11 -   1.7
+++ ChangeLog   10 Jan 2015 09:18:55 -  1.8
@@ -1,6 +1,11 @@
 # ChangeLog for dev-haskell/pandoc-citeproc
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-haskell/pandoc-citeproc/ChangeLog,v 1.7 
2015/01/02 10:33:11 slyfox Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-haskell/pandoc-citeproc/ChangeLog,v 1.8 
2015/01/10 09:18:55 gienah Exp $
+
+  10 Jan 2015; Mark Wright gie...@gentoo.org
+  +files/pandoc-citeproc-0.6-ghc-7.10.patch, pandoc-citeproc-0.6.ebuild:
+  Patch pandoc-citeproc for ghc 7.10.1 RC1 https://github.com/jgm/pandoc-
+  citeproc/pull/99
 
   02 Jan 2015; Sergei Trofimovich sly...@gentoo.org
   pandoc-citeproc-0.3.1.ebuild:






[gentoo-commits] gentoo-x86 commit in media-gfx/entangle: entangle-0.6.0.ebuild ChangeLog

2015-01-10 Thread Michal Gorny (mgorny)
mgorny  15/01/10 10:56:06

  Modified: entangle-0.6.0.ebuild ChangeLog
  Log:
  Remove unnecessary patch. Fix the ebuild not to use non-existing patches. Add 
missing [introspection] deps.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
EFB4464E!)

Revision  ChangesPath
1.2  media-gfx/entangle/entangle-0.6.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/entangle/entangle-0.6.0.ebuild?rev=1.2view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/entangle/entangle-0.6.0.ebuild?rev=1.2content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/entangle/entangle-0.6.0.ebuild?r1=1.1r2=1.2

Index: entangle-0.6.0.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/media-gfx/entangle/entangle-0.6.0.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- entangle-0.6.0.ebuild   30 Dec 2014 19:12:20 -  1.1
+++ entangle-0.6.0.ebuild   10 Jan 2015 10:56:06 -  1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/media-gfx/entangle/entangle-0.6.0.ebuild,v 
1.1 2014/12/30 19:12:20 dilfridge Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-gfx/entangle/entangle-0.6.0.ebuild,v 
1.2 2015/01/10 10:56:06 mgorny Exp $
 
 EAPI=5
 
@@ -17,14 +17,14 @@
 
 DEPEND==dev-libs/glib-2.26:2
=x11-libs/gdk-pixbuf-2.12.0:2
-   =x11-libs/gtk+-3.3.18:3
+   =x11-libs/gtk+-3.3.18:3[introspection]
virtual/libgudev:=
=dev-libs/dbus-glib-0.60
=dev-libs/gobject-introspection-0.9.3
=media-libs/libgphoto2-2.4.11:=
media-libs/lcms:2
=dev-libs/libpeas-1.2.0[gtk]
-   =media-libs/gexiv2-0.4
+   =media-libs/gexiv2-0.4[introspection]
=x11-libs/libXext-1.3.0
=x11-themes/gnome-icon-theme-symbolic-3.0.0
=media-libs/libraw-0.9.0
@@ -40,10 +40,3 @@
--disable-static
 
 DOCS=( AUTHORS ChangeLog NEWS README )
-
-src_prepare() {
-   gnome2_src_prepare
-
-   has_version '=media-libs/libgphoto2-2.5.0'  \
-   epatch ${FILESDIR}/${P}+libgphoto2-2.5.0.patch
-}



1.11 media-gfx/entangle/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/entangle/ChangeLog?rev=1.11view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/entangle/ChangeLog?rev=1.11content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-gfx/entangle/ChangeLog?r1=1.10r2=1.11

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-gfx/entangle/ChangeLog,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -r1.10 -r1.11
--- ChangeLog   30 Dec 2014 19:12:20 -  1.10
+++ ChangeLog   10 Jan 2015 10:56:06 -  1.11
@@ -1,6 +1,11 @@
 # ChangeLog for media-gfx/entangle
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-gfx/entangle/ChangeLog,v 1.10 
2014/12/30 19:12:20 dilfridge Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-gfx/entangle/ChangeLog,v 1.11 
2015/01/10 10:56:06 mgorny Exp $
+
+  10 Jan 2015; Michał Górny mgo...@gentoo.org
+  -files/entangle-0.5.0+libgphoto2-2.5.0.patch, entangle-0.6.0.ebuild:
+  Remove unnecessary patch. Fix the ebuild not to use non-existing patches. Add
+  missing [introspection] deps.
 
 *entangle-0.6.0 (30 Dec 2014)
 






[gentoo-commits] gentoo-x86 commit in media-gfx/entangle/files: entangle-0.5.0+libgphoto2-2.5.0.patch

2015-01-10 Thread Michal Gorny (mgorny)
mgorny  15/01/10 10:56:06

  Removed:  entangle-0.5.0+libgphoto2-2.5.0.patch
  Log:
  Remove unnecessary patch. Fix the ebuild not to use non-existing patches. Add 
missing [introspection] deps.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
EFB4464E!)



[gentoo-commits] dev/ikelos:master commit in: dev-util/pycharm-community/

2015-01-10 Thread Mike Auty
commit: ae8a04d214dd38845c92a606f8b343733ed3446e
Author: Mike Auty mike.auty AT gmail DOT com
AuthorDate: Fri Jan  9 00:38:42 2015 +
Commit: Mike Auty ikelos AT gentoo DOT org
CommitDate: Fri Jan  9 00:38:42 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=dev/ikelos.git;a=commit;h=ae8a04d2

Version bump pycharm-community.

---
 dev-util/pycharm-community/Manifest   | 4 ++--
 ...{pycharm-community-4.0.3.ebuild = pycharm-community-4.0.4.ebuild} | 0
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-util/pycharm-community/Manifest 
b/dev-util/pycharm-community/Manifest
index d58fa2f..088d57a 100644
--- a/dev-util/pycharm-community/Manifest
+++ b/dev-util/pycharm-community/Manifest
@@ -1,3 +1,3 @@
 AUX README.gentoo 169 SHA256 
3bcfb4f4909ec42cbaba2645b5c88d111f47b7d5e800a8aeadf3130091fd8bab SHA512 
a0254552b98b6ec8dadd91ed7df35bf990d08025d8352366f58ecabe94cdde2df64d8665447d0a2ffc1edacdeb05124c2a82722d5ad70b614d90bb0ae38544d2
 WHIRLPOOL 
f0de5cc2a1955e210655ee10d305bcfaf6a4a7b6dba46e17eece981d50bb461e9bd5bde772462a5849ebf59e54357bcfe42a5322c614bc75c1f96202654aa605
-DIST pycharm-community-4.0.3.tar.gz 120391657 SHA256 
44f751a107597cf2b92ed4d7fb81aa5481ff450703b88a84c6376c22683e6162 SHA512 
5ab67b90b5febd9d4c01c0bedce029d45660ff7e898985f27fbfdbba07c8f1a4b512dd5b452362744da29309f7d233077896b16359e5efc30a6519a83dcab8ca
 WHIRLPOOL 
4c4214f7913c844b5a507e831a993214616bb4107933491bafc226478899bdb8f89eecfef3c4da84df67abc589a2fb6dc28bbc9702f5d084afc53e741709d6d3
-EBUILD pycharm-community-4.0.3.ebuild 1170 SHA256 
03a13b965f558df1d464d7cdc1c2f206b1fcab700b754106a562f8e5cd2185cf SHA512 
b096f7ede35db8cd63803bc09de13f6e1320f1e69d09d58b6905163b41c86ee8965336d69497aa7d1715e2da274ef8b02c8fc788b99057c511edc2a7495b8fbc
 WHIRLPOOL 
206d510fd14aa3d2ef7c1441dc9eceb7a3bc547582068c38994f683bfd8221525652855f5a22af873e9c02dee3dfdc0c4119b3bcb87f7c5f775190cad5f1fdb6
+DIST pycharm-community-4.0.4.tar.gz 120418004 SHA256 
14a6a7dc809afd307fcc1e4b39cc6b9f7e61aa44b59a952d7f4cbbf1172ff300 SHA512 
83b6e85da981230a2f2c528a54e2a81d76183331c70c1737ce91136d128784e894228a17e23328d3d237de342c5eb48d4bc50a10f6427e7668113f2e93e1e4b6
 WHIRLPOOL 
170b7e9cca70feb55390011b97cc8cb3c86d45e330dcb5897b435887930a2640c053b5aa1b4e553589d6ce9b81b4ee55ed6535294d7d2d57f2dbdb8895364dee
+EBUILD pycharm-community-4.0.4.ebuild 1170 SHA256 
03a13b965f558df1d464d7cdc1c2f206b1fcab700b754106a562f8e5cd2185cf SHA512 
b096f7ede35db8cd63803bc09de13f6e1320f1e69d09d58b6905163b41c86ee8965336d69497aa7d1715e2da274ef8b02c8fc788b99057c511edc2a7495b8fbc
 WHIRLPOOL 
206d510fd14aa3d2ef7c1441dc9eceb7a3bc547582068c38994f683bfd8221525652855f5a22af873e9c02dee3dfdc0c4119b3bcb87f7c5f775190cad5f1fdb6

diff --git a/dev-util/pycharm-community/pycharm-community-4.0.3.ebuild 
b/dev-util/pycharm-community/pycharm-community-4.0.4.ebuild
similarity index 100%
rename from dev-util/pycharm-community/pycharm-community-4.0.3.ebuild
rename to dev-util/pycharm-community/pycharm-community-4.0.4.ebuild



[gentoo-commits] dev/ikelos:master commit in: dev-util/pycharm-community/

2015-01-10 Thread Mike Auty
commit: 5cd152d21fd5f3d02bb47320bd33b641e0e48e83
Author: Mike Auty ikelos AT gentoo DOT org
AuthorDate: Tue Dec 16 23:31:51 2014 +
Commit: Mike Auty ikelos AT gentoo DOT org
CommitDate: Tue Dec 16 23:31:51 2014 +
URL:
http://sources.gentoo.org/gitweb/?p=dev/ikelos.git;a=commit;h=5cd152d2

Bump pycharm to fix the odd gtk+ find bar bug.

---
 dev-util/pycharm-community/Manifest   | 4 ++--
 ...{pycharm-community-4.0.1.ebuild = pycharm-community-4.0.3.ebuild} | 0
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-util/pycharm-community/Manifest 
b/dev-util/pycharm-community/Manifest
index b783163..d58fa2f 100644
--- a/dev-util/pycharm-community/Manifest
+++ b/dev-util/pycharm-community/Manifest
@@ -1,3 +1,3 @@
 AUX README.gentoo 169 SHA256 
3bcfb4f4909ec42cbaba2645b5c88d111f47b7d5e800a8aeadf3130091fd8bab SHA512 
a0254552b98b6ec8dadd91ed7df35bf990d08025d8352366f58ecabe94cdde2df64d8665447d0a2ffc1edacdeb05124c2a82722d5ad70b614d90bb0ae38544d2
 WHIRLPOOL 
f0de5cc2a1955e210655ee10d305bcfaf6a4a7b6dba46e17eece981d50bb461e9bd5bde772462a5849ebf59e54357bcfe42a5322c614bc75c1f96202654aa605
-DIST pycharm-community-4.0.1.tar.gz 120167832 SHA256 
62dbf4db642f3347852088f29dc84c91acfd8f5f0e05a0dee1f7dd5662d7004a SHA512 
f8aba87a6a88dd343814344006c95260896c4b2ef956492181513cad3fb18b291aafc646603135131d57648981566f80e4a096e9f9a4747087c6ee25e74840b7
 WHIRLPOOL 
f01606acf02e3cced50bc570c5c3037c01d2f3fbe58e6b0434bc11296280917e4d8b6e59a36eb20ab07786efd8b13cdc4a94797cc0dc50fe130574c6b8d89b7c
-EBUILD pycharm-community-4.0.1.ebuild 1170 SHA256 
03a13b965f558df1d464d7cdc1c2f206b1fcab700b754106a562f8e5cd2185cf SHA512 
b096f7ede35db8cd63803bc09de13f6e1320f1e69d09d58b6905163b41c86ee8965336d69497aa7d1715e2da274ef8b02c8fc788b99057c511edc2a7495b8fbc
 WHIRLPOOL 
206d510fd14aa3d2ef7c1441dc9eceb7a3bc547582068c38994f683bfd8221525652855f5a22af873e9c02dee3dfdc0c4119b3bcb87f7c5f775190cad5f1fdb6
+DIST pycharm-community-4.0.3.tar.gz 120391657 SHA256 
44f751a107597cf2b92ed4d7fb81aa5481ff450703b88a84c6376c22683e6162 SHA512 
5ab67b90b5febd9d4c01c0bedce029d45660ff7e898985f27fbfdbba07c8f1a4b512dd5b452362744da29309f7d233077896b16359e5efc30a6519a83dcab8ca
 WHIRLPOOL 
4c4214f7913c844b5a507e831a993214616bb4107933491bafc226478899bdb8f89eecfef3c4da84df67abc589a2fb6dc28bbc9702f5d084afc53e741709d6d3
+EBUILD pycharm-community-4.0.3.ebuild 1170 SHA256 
03a13b965f558df1d464d7cdc1c2f206b1fcab700b754106a562f8e5cd2185cf SHA512 
b096f7ede35db8cd63803bc09de13f6e1320f1e69d09d58b6905163b41c86ee8965336d69497aa7d1715e2da274ef8b02c8fc788b99057c511edc2a7495b8fbc
 WHIRLPOOL 
206d510fd14aa3d2ef7c1441dc9eceb7a3bc547582068c38994f683bfd8221525652855f5a22af873e9c02dee3dfdc0c4119b3bcb87f7c5f775190cad5f1fdb6

diff --git a/dev-util/pycharm-community/pycharm-community-4.0.1.ebuild 
b/dev-util/pycharm-community/pycharm-community-4.0.3.ebuild
similarity index 100%
rename from dev-util/pycharm-community/pycharm-community-4.0.1.ebuild
rename to dev-util/pycharm-community/pycharm-community-4.0.3.ebuild



[gentoo-commits] gentoo-x86 commit in dev-cpp/lucene++: - New directory

2015-01-10 Thread Johannes Huber (johu)
johu15/01/10 13:32:58

  Log:
  Directory /var/cvsroot/gentoo-x86/dev-cpp/lucene++ added to the repository



[gentoo-commits] gentoo-x86 commit in dev-cpp/lucene++/files: - New directory

2015-01-10 Thread Johannes Huber (johu)
johu15/01/10 13:33:22

  Log:
  Directory /var/cvsroot/gentoo-x86/dev-cpp/lucene++/files added to the 
repository



[gentoo-commits] gentoo-x86 commit in profiles: ChangeLog

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 14:50:39

  Modified: ChangeLog
  Log:
  Update use.masks

Revision  ChangesPath
1.9677   profiles/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?rev=1.9677view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?rev=1.9677content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?r1=1.9676r2=1.9677

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v
retrieving revision 1.9676
retrieving revision 1.9677
diff -u -r1.9676 -r1.9677
--- ChangeLog   10 Jan 2015 13:49:46 -  1.9676
+++ ChangeLog   10 Jan 2015 14:50:39 -  1.9677
@@ -1,11 +1,15 @@
 # ChangeLog for profile directory
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v 1.9676 2015/01/10 
13:49:46 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v 1.9677 2015/01/10 
14:50:39 pacho Exp $
 #
 # This ChangeLog should include records for all changes in profiles directory.
 # Only typo fixes which don't affect portage/repoman behaviour could be avoided
 # here. If in doubt put a record here!
 
+  10 Jan 2015; Pacho Ramos pa...@gentoo.org arch/alpha/package.use.mask,
+  arch/ia64/package.use.mask, arch/sparc/package.use.mask:
+  Update use.masks
+
   10 Jan 2015; Pacho Ramos pa...@gentoo.org
   arch/amd64/no-emul-linux-x86/package.use.stable.mask,
   arch/amd64/package.use.stable.mask:






[gentoo-commits] gentoo-x86 commit in profiles/arch/ia64: package.use.mask

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 14:50:39

  Modified: package.use.mask
  Log:
  Update use.masks

Revision  ChangesPath
1.157profiles/arch/ia64/package.use.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/ia64/package.use.mask?rev=1.157view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/ia64/package.use.mask?rev=1.157content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/ia64/package.use.mask?r1=1.156r2=1.157

Index: package.use.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/arch/ia64/package.use.mask,v
retrieving revision 1.156
retrieving revision 1.157
diff -u -r1.156 -r1.157
--- package.use.mask23 Dec 2014 23:15:14 -  1.156
+++ package.use.mask10 Jan 2015 14:50:39 -  1.157
@@ -1,6 +1,10 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/profiles/arch/ia64/package.use.mask,v 1.156 
2014/12/23 23:15:14 eva Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/arch/ia64/package.use.mask,v 1.157 
2015/01/10 14:50:39 pacho Exp $
+
+# Pacho Ramos pa...@gentoo.org (10 Jan 2014)
+# Missing keywords
+net-misc/networkmanager teamd  
 
 # Gilles Dartiguelongue e...@gentoo.org (23 Dec 2014)
 # New dependencies for wayland support in Gnome 3.14






[gentoo-commits] gentoo-x86 commit in profiles/arch/sparc: package.use.mask

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 14:50:39

  Modified: package.use.mask
  Log:
  Update use.masks

Revision  ChangesPath
1.182profiles/arch/sparc/package.use.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/sparc/package.use.mask?rev=1.182view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/sparc/package.use.mask?rev=1.182content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/sparc/package.use.mask?r1=1.181r2=1.182

Index: package.use.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/arch/sparc/package.use.mask,v
retrieving revision 1.181
retrieving revision 1.182
diff -u -r1.181 -r1.182
--- package.use.mask23 Dec 2014 23:15:31 -  1.181
+++ package.use.mask10 Jan 2015 14:50:39 -  1.182
@@ -1,6 +1,10 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/profiles/arch/sparc/package.use.mask,v 
1.181 2014/12/23 23:15:31 eva Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/arch/sparc/package.use.mask,v 
1.182 2015/01/10 14:50:39 pacho Exp $
+
+# Pacho Ramos pa...@gentoo.org (10 Jan 2014)
+# Missing keywords
+net-misc/networkmanager teamd  
 
 # Gilles Dartiguelongue e...@gentoo.org (23 Dec 2014)
 # New dependencies for wayland support in Gnome 3.14






[gentoo-commits] gentoo-x86 commit in profiles/arch/alpha: package.use.mask

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 14:50:39

  Modified: package.use.mask
  Log:
  Update use.masks

Revision  ChangesPath
1.175profiles/arch/alpha/package.use.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/alpha/package.use.mask?rev=1.175view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/alpha/package.use.mask?rev=1.175content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/alpha/package.use.mask?r1=1.174r2=1.175

Index: package.use.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/arch/alpha/package.use.mask,v
retrieving revision 1.174
retrieving revision 1.175
diff -u -r1.174 -r1.175
--- package.use.mask23 Dec 2014 23:15:01 -  1.174
+++ package.use.mask10 Jan 2015 14:50:39 -  1.175
@@ -1,6 +1,10 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/profiles/arch/alpha/package.use.mask,v 
1.174 2014/12/23 23:15:01 eva Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/arch/alpha/package.use.mask,v 
1.175 2015/01/10 14:50:39 pacho Exp $
+
+# Pacho Ramos pa...@gentoo.org (10 Jan 2014)
+# Missing keywords
+net-misc/networkmanager teamd
 
 # Gilles Dartiguelongue e...@gentoo.org (23 Dec 2014)
 # New dependencies for wayland support in Gnome 3.14






[gentoo-commits] gentoo-x86 commit in net-misc/networkmanager-vpnc: networkmanager-vpnc-1.0.0.ebuild ChangeLog

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 15:30:42

  Modified: ChangeLog
  Added:networkmanager-vpnc-1.0.0.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.42 net-misc/networkmanager-vpnc/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-vpnc/ChangeLog?rev=1.42view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-vpnc/ChangeLog?rev=1.42content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-vpnc/ChangeLog?r1=1.41r2=1.42

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/net-misc/networkmanager-vpnc/ChangeLog,v
retrieving revision 1.41
retrieving revision 1.42
diff -u -r1.41 -r1.42
--- ChangeLog   19 Dec 2014 13:42:58 -  1.41
+++ ChangeLog   10 Jan 2015 15:30:42 -  1.42
@@ -1,6 +1,11 @@
 # ChangeLog for net-misc/networkmanager-vpnc
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/net-misc/networkmanager-vpnc/ChangeLog,v 
1.41 2014/12/19 13:42:58 pacho Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/net-misc/networkmanager-vpnc/ChangeLog,v 
1.42 2015/01/10 15:30:42 pacho Exp $
+
+*networkmanager-vpnc-1.0.0 (10 Jan 2015)
+
+  10 Jan 2015; Pacho Ramos pa...@gentoo.org 
+networkmanager-vpnc-1.0.0.ebuild:
+  Version bump
 
   19 Dec 2014; Pacho Ramos pa...@gentoo.org
   networkmanager-vpnc-0.9.10.0.ebuild:



1.1  
net-misc/networkmanager-vpnc/networkmanager-vpnc-1.0.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-vpnc/networkmanager-vpnc-1.0.0.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-vpnc/networkmanager-vpnc-1.0.0.ebuild?rev=1.1content-type=text/plain

Index: networkmanager-vpnc-1.0.0.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager-vpnc/networkmanager-vpnc-1.0.0.ebuild,v
 1.1 2015/01/10 15:30:42 pacho Exp $

EAPI=5
GCONF_DEBUG=no
GNOME_ORG_MODULE=NetworkManager-${PN##*-}

inherit gnome2

DESCRIPTION=NetworkManager VPNC plugin
HOMEPAGE=https://wiki.gnome.org/Projects/NetworkManager;

LICENSE=GPL-2+
SLOT=0
KEYWORDS=~amd64 ~arm ~x86
IUSE=gtk test

RDEPEND=
=net-misc/networkmanager-0.9.10:=
=dev-libs/dbus-glib-0.74
=dev-libs/glib-2.32:2
=net-misc/vpnc-0.5
gtk? (
app-crypt/libsecret
=gnome-extra/nm-applet-0.9.9.0
=x11-libs/gtk+-3.4:3
)

DEPEND=${RDEPEND}
sys-devel/gettext
dev-util/intltool
virtual/pkgconfig


src_prepare() {
# Test will fail if the machine doesn't have a particular locale 
installed
# upstream bug #742708
sed '/test_non_utf8_import (plugin/ d' \
-i properties/tests/test-import-export.c || die sed failed

gnome2_src_prepare
}

src_configure() {
gnome2_src_configure \
--disable-more-warnings \
--disable-static \
--with-dist-version=Gentoo \
$(use_with gtk gnome) \
$(use_with test tests)
}






[gentoo-commits] gentoo-x86 commit in profiles/arch/amd64: package.use.stable.mask

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 13:53:08

  Modified: package.use.stable.mask
  Log:
  Update multilib masks

Revision  ChangesPath
1.106profiles/arch/amd64/package.use.stable.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/package.use.stable.mask?rev=1.106view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/package.use.stable.mask?rev=1.106content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/package.use.stable.mask?r1=1.105r2=1.106

Index: package.use.stable.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/arch/amd64/package.use.stable.mask,v
retrieving revision 1.105
retrieving revision 1.106
diff -u -r1.105 -r1.106
--- package.use.stable.mask 10 Jan 2015 13:49:46 -  1.105
+++ package.use.stable.mask 10 Jan 2015 13:53:08 -  1.106
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/profiles/arch/amd64/package.use.stable.mask,v 1.105 
2015/01/10 13:49:46 pacho Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/profiles/arch/amd64/package.use.stable.mask,v 1.106 
2015/01/10 13:53:08 pacho Exp $
 
 # When you add an entry to the top of this file, add your name, the date, and
 # an explanation of why something is getting masked. Please be extremely
@@ -142,6 +142,7 @@
 dev-qt/qtsvg abi_x86_32
 dev-qt/qtwebkit abi_x86_32
 dev-qt/qtxmlpatterns abi_x86_32
+dev-util/cunit abi_x86_32
 dev-util/pkgconfig abi_x86_32
 gnome-base/gconf abi_x86_32
 gnome-base/gnome-vfs abi_x86_32






[gentoo-commits] gentoo-x86 commit in profiles/arch/amd64/no-emul-linux-x86: package.use.stable.mask

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 13:53:08

  Modified: package.use.stable.mask
  Log:
  Update multilib masks

Revision  ChangesPath
1.32 
profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask?rev=1.32view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask?rev=1.32content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask?r1=1.31r2=1.32

Index: package.use.stable.mask
===
RCS file: 
/var/cvsroot/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask,v
retrieving revision 1.31
retrieving revision 1.32
diff -u -r1.31 -r1.32
--- package.use.stable.mask 10 Jan 2015 13:49:46 -  1.31
+++ package.use.stable.mask 10 Jan 2015 13:53:08 -  1.32
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask,v
 1.31 2015/01/10 13:49:46 pacho Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask,v
 1.32 2015/01/10 13:53:08 pacho Exp $
 
 # Michał Górny mgo...@gentoo.org (14 Sep 2014)
 # on behalf of gx86-multilib project multi...@gentoo.org
@@ -120,6 +120,7 @@
 dev-qt/qtsvg -abi_x86_32
 dev-qt/qtwebkit -abi_x86_32
 dev-qt/qtxmlpatterns -abi_x86_32
+dev-util/cunit -abi_x86_32
 dev-util/pkgconfig -abi_x86_32
 gnome-base/gconf -abi_x86_32
 gnome-base/gnome-vfs -abi_x86_32






[gentoo-commits] proj/sci:master commit in: sci-biology/ICC/

2015-01-10 Thread Justin Lecher
commit: faf30b314304a3f330119143956ddc3fab42e2f6
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:02:56 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:02:56 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=faf30b31

sci-biology/ICC: Fix license

Package-Manager: portage-2.2.15

---
 sci-biology/ICC/ChangeLog| 3 +++
 sci-biology/ICC/ICC-2.0.1.ebuild | 8 
 2 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/sci-biology/ICC/ChangeLog b/sci-biology/ICC/ChangeLog
index cd415fd..d3b0837 100644
--- a/sci-biology/ICC/ChangeLog
+++ b/sci-biology/ICC/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org ICC-2.0.1.ebuild:
+  Fix license
+
 *ICC-2.0.1 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz +ICC-2.0.1.ebuild:

diff --git a/sci-biology/ICC/ICC-2.0.1.ebuild b/sci-biology/ICC/ICC-2.0.1.ebuild
index fe41383..672096b 100644
--- a/sci-biology/ICC/ICC-2.0.1.ebuild
+++ b/sci-biology/ICC/ICC-2.0.1.ebuild
@@ -4,16 +4,17 @@
 
 EAPI=5
 
-DESCRIPTION=Error corrector for Roche/454 and IonTorrent data with indel and 
carryforward, SNP and haplotype calling
+DESCRIPTION=Error corrector for Roche/454 and IonTorrent data
 HOMEPAGE=http://indra.mullins.microbiol.washington.edu/ICC;
 
SRC_URI=http://indra.mullins.microbiol.washington.edu/cgi-bin/ICC/info.cgi?ID=ICC_v2.0.1.zip
 - ICC_v2.0.1.zip
 
-LICENSE=
+LICENSE=all-rights-reserved
 SLOT=0
 KEYWORDS=
 IUSE=
 
-DEPEND=dev-lang/perl
+DEPEND=
+   dev-lang/perl
dev-perl/Parallel-ForkManager
sci-biology/ncbi-tools++
 RDEPEND=${DEPEND}
@@ -52,4 +53,3 @@ src_install(){
 #testing: Scripts/runICC.plOK
 #testing: Scripts/uniqueReads.pl   OK
 #testing: VersionHistory.txt   OK
-



[gentoo-commits] proj/sci:master commit in: /

2015-01-10 Thread Justin Lecher
commit: 205621fbbbc3cb8826bff69b48ddb61badd599fe
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:11:00 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:11:00 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=205621fb

Merge remote-tracking branch 'github/master'

* github/master:
  Fix mosstack QA warnings: Clean Manifest


 sci-astronomy/mosstack/Manifest | 1 -
 1 file changed, 1 deletion(-)



[gentoo-commits] proj/sci:master commit in: sci-biology/cegma/

2015-01-10 Thread Justin Lecher
commit: 62133b81b8699efdb44997526481b4ec2ae87ad7
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:10:28 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:10:28 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=62133b81

sci-biology/cegma: Fix license;drop keywords due to missing keyowrds of deps

Package-Manager: portage-2.2.15

---
 sci-biology/cegma/ChangeLog| 3 +++
 sci-biology/cegma/cegma-2.5.ebuild | 9 +
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/sci-biology/cegma/ChangeLog b/sci-biology/cegma/ChangeLog
index 8e87015..aae6086 100644
--- a/sci-biology/cegma/ChangeLog
+++ b/sci-biology/cegma/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org cegma-2.5.ebuild:
+  Fix license;drop keywords due to missing keyowrds of deps
+
   10 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz +cegma-2.5.ebuild,
   +metadata.xml:
   new package; install *.pm into PERL5LIB/cegma and pass that via env.d

diff --git a/sci-biology/cegma/cegma-2.5.ebuild 
b/sci-biology/cegma/cegma-2.5.ebuild
index ef8dfe5..bbc1199 100644
--- a/sci-biology/cegma/cegma-2.5.ebuild
+++ b/sci-biology/cegma/cegma-2.5.ebuild
@@ -4,16 +4,17 @@
 
 EAPI=5
 
-DESCRIPTION=Use set of 458 core proteins to predict genes in a genome and use 
them for training to find all genes
+DESCRIPTION=Predict genes in a genome and use them for training to find all 
genes
 HOMEPAGE=http://korflab.ucdavis.edu/datasets/cegma;
-SRC_URI=http://korflab.ucdavis.edu/datasets/cegma/CEGMA_v${PV}.tar.gz;
+SRC_URI=http://korflab.ucdavis.edu/datasets/cegma/CEGMA_v${PV}.tar.gz;
 
 LICENSE=GPL-2
 SLOT=0
-KEYWORDS=~amd64
+KEYWORDS=
 IUSE=
 
-DEPEND=dev-lang/perl
+DEPEND=
+   dev-lang/perl
sci-biology/wise
=sci-biology/hmmer-3.0
sci-biology/geneid



[gentoo-commits] proj/sci:master commit in: sci-biology/CAutils/

2015-01-10 Thread Justin Lecher
commit: baf18af79124495ca8635308c469883363b02152
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 13:53:01 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 13:53:01 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=baf18af7

sci-biology/CAutils: Fix license

Package-Manager: portage-2.2.15

---
 sci-biology/CAutils/CAutils-20120126.ebuild | 8 
 sci-biology/CAutils/ChangeLog   | 7 +++
 2 files changed, 11 insertions(+), 4 deletions(-)

diff --git a/sci-biology/CAutils/CAutils-20120126.ebuild 
b/sci-biology/CAutils/CAutils-20120126.ebuild
index 7b1ca7b..24478ec 100644
--- a/sci-biology/CAutils/CAutils-20120126.ebuild
+++ b/sci-biology/CAutils/CAutils-20120126.ebuild
@@ -1,14 +1,14 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=3
+EAPI=5
 
 DESCRIPTION=Additional utilities for Celera assembler (wgs-assembler) from 
UMD
-HOMEPAGE=http://www.cbcb.umd.edu/research/CeleraAssembler.shtml;
+HOMEPAGE=http://www.cbcb.umd.edu/software/celera-assembler;
 SRC_URI=ftp://ftp.cbcb.umd.edu/pub/software/CAutils.tar.gz;
 
-LICENSE=
+LICENSE=GPL-3
 SLOT=0
 KEYWORDS=~amd64 ~x86
 IUSE=

diff --git a/sci-biology/CAutils/ChangeLog b/sci-biology/CAutils/ChangeLog
new file mode 100644
index 000..8e70c1a
--- /dev/null
+++ b/sci-biology/CAutils/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/CAutils
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  10 Jan 2015; Justin Lecher j...@gentoo.org CAutils-20120126.ebuild:
+  Fix license
+



[gentoo-commits] proj/sci:master commit in: sci-biology/MochiView/

2015-01-10 Thread Justin Lecher
commit: 2b4970ccaf520713eccfa979c9520623c24e5108
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:06:01 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:06:01 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2b4970cc

sci-biology/MochiView: Fix license

Package-Manager: portage-2.2.15

---
 sci-biology/MochiView/ChangeLog | 3 +++
 sci-biology/MochiView/MochiView-1.45.ebuild | 2 +-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/sci-biology/MochiView/ChangeLog b/sci-biology/MochiView/ChangeLog
index 55ef996..d36ec2a 100644
--- a/sci-biology/MochiView/ChangeLog
+++ b/sci-biology/MochiView/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org MochiView-1.45.ebuild:
+  Fix license
+
 *MochiView-1.45 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz

diff --git a/sci-biology/MochiView/MochiView-1.45.ebuild 
b/sci-biology/MochiView/MochiView-1.45.ebuild
index c1a8145..1daa8d9 100644
--- a/sci-biology/MochiView/MochiView-1.45.ebuild
+++ b/sci-biology/MochiView/MochiView-1.45.ebuild
@@ -8,7 +8,7 @@ DESCRIPTION=Genome browser and analysis
 HOMEPAGE=http://johnsonlab.ucsf.edu/mochi.html;
 SRC_URI=
 
-LICENSE=
+LICENSE=MIT
 SLOT=0
 KEYWORDS=
 IUSE=



[gentoo-commits] proj/sci:master commit in: sci-biology/Atlas_GapFill/

2015-01-10 Thread Justin Lecher
commit: 758306af1aa25823c98b475b05c1dfa672a2c3fc
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 13:50:11 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 13:50:11 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=758306af

sci-biology/Atlas_GapFill: Fix license

Package-Manager: portage-2.2.15

---
 sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild | 15 ++-
 sci-biology/Atlas_GapFill/ChangeLog|  3 +++
 2 files changed, 13 insertions(+), 5 deletions(-)

diff --git a/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild 
b/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
index c658019..2985d23 100644
--- a/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
+++ b/sci-biology/Atlas_GapFill/Atlas_GapFill-2.2.ebuild
@@ -4,19 +4,24 @@
 
 EAPI=5
 
-DESCRIPTION=Close gaps using BWA-identified reads and reassemble using Phrap, 
Newbler, Velvet, compare by cross_match
+DESCRIPTION=Close gaps using BWA-identified reads and reassemble
 HOMEPAGE=https://www.hgsc.bcm.edu/software/atlas-gapfill;
-SRC_URI=https://www.hgsc.bcm.edu/sites/default/files/software/ATLAS_GapFill_V2_2/ATLAS_GapFill_V2.2_release.tar.bz2
+SRC_URI=
+   
https://www.hgsc.bcm.edu/sites/default/files/software/ATLAS_GapFill_V2_2/ATLAS_GapFill_V2.2_release.tar.bz2

https://www.hgsc.bcm.edu/sites/default/files/software/ATLAS_GapFill_V2_2/README 
- ATLAS_GapFill_V2_2.README
 
-LICENSE=
+LICENSE=ATLAS
 SLOT=0
 KEYWORDS=
 IUSE=
 
 # is there an ebuild for newbler so we could add it to DEPEND?
-DEPEND=dev-lang/perl
-   sys-cluster/torque || ( sys-cluster/openpbs )
+DEPEND=
+   dev-lang/perl
+   || (
+   sys-cluster/openpbs
+   sys-cluster/torque
+   )
sci-biology/phrap
sci-biology/bwa
sci-biology/velvet

diff --git a/sci-biology/Atlas_GapFill/ChangeLog 
b/sci-biology/Atlas_GapFill/ChangeLog
index 74cc2d8..7504c07 100644
--- a/sci-biology/Atlas_GapFill/ChangeLog
+++ b/sci-biology/Atlas_GapFill/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org Atlas_GapFill-2.2.ebuild:
+  Fix license
+
 *Atlas_GapFill-2.2 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz



[gentoo-commits] proj/sci:master commit in: sci-biology/est2assembly/

2015-01-10 Thread Justin Lecher
commit: 6396d9dcc78b362596fc1ed13b8365589b3a6316
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 13:44:36 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 13:44:36 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6396d9dc

sci-biology/est2assembly: Bump EAPI; drop KEYWORDS from live ebuild; fix deps

Package-Manager: portage-2.2.15

---
 sci-biology/est2assembly/ChangeLog|  8 +++
 sci-biology/est2assembly/est2assembly-1.08.ebuild | 26 +++
 sci-biology/est2assembly/est2assembly-.ebuild | 23 ++--
 3 files changed, 33 insertions(+), 24 deletions(-)

diff --git a/sci-biology/est2assembly/ChangeLog 
b/sci-biology/est2assembly/ChangeLog
new file mode 100644
index 000..9024848
--- /dev/null
+++ b/sci-biology/est2assembly/ChangeLog
@@ -0,0 +1,8 @@
+# ChangeLog for sci-biology/est2assembly
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  10 Jan 2015; Justin Lecher j...@gentoo.org est2assembly-1.08.ebuild,
+  est2assembly-.ebuild:
+  Bump EAPI; drop KEYWORDS from live ebuild; fix deps
+

diff --git a/sci-biology/est2assembly/est2assembly-1.08.ebuild 
b/sci-biology/est2assembly/est2assembly-1.08.ebuild
index 72fcd5d..dcbcfb5 100644
--- a/sci-biology/est2assembly/est2assembly-1.08.ebuild
+++ b/sci-biology/est2assembly/est2assembly-1.08.ebuild
@@ -1,26 +1,26 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=3
+EAPI=5
 
 DESCRIPTION=EST assembly and annotation pipeline for chado/gbrowse2 display
 HOMEPAGE=http://code.google.com/p/est2assembly/;
 SRC_URI=http://est2assembly.googlecode.com/files/est2assembly_1.08.tar.gz;
 
-LICENSE=GPL-v3
+LICENSE=GPL-3
 SLOT=0
 KEYWORDS=~amd64 ~x86
 IUSE=
 
-DEPEND=dev-lang/perl
-   app-portage/g-cpan
-   perl-gcpan/Time-Progress
-   sci-biology/fasta
-   sci-biology/ssaha2
-   sci-biology/mira
-   sci-biology/emboss
-   sci-biology/bioperl
-   app-arch/pbzip2
+DEPEND=
+   app-arch/pbzip2
+   app-portage/g-cpan
+   dev-lang/perl
+   dev-perl/Time-Progress
+   sci-biology/fasta
+   sci-biology/ssaha2-bin
+   sci-biology/mira
+   sci-biology/emboss
+   sci-biology/bioperl
 RDEPEND=${DEPEND}
-

diff --git a/sci-biology/est2assembly/est2assembly-.ebuild 
b/sci-biology/est2assembly/est2assembly-.ebuild
index 11284c5..c1c58a2 100644
--- a/sci-biology/est2assembly/est2assembly-.ebuild
+++ b/sci-biology/est2assembly/est2assembly-.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
 EAPI=5
 
-PYTHON_COMPAT=( python{2_6,2_7} )
+PYTHON_COMPAT=( python2_7 )
 
 inherit eutils distutils-r1
 
@@ -16,7 +16,7 @@ ESVN_REPO_URI=http://est2assembly.googlecode.com/svn/trunk;
 
 if [ $PV ==  ]; then
ESVN_REPO_URI=http://est2assembly.googlecode.com/svn/trunk;
-   KEYWORDS=~amd64 ~x86
+   KEYWORDS=
 else

SRC_URI=http://est2assembly.googlecode.com/files/est2assembly_${PV}.tar.gz;
KEYWORDS=~amd64 ~x86
@@ -30,14 +30,15 @@ IUSE=
 # annot8r  http://nematodes.org/bioinformatics/annot8r/index.shtml and 
http://nematodes.org/bioinformatics/Annot8r_physprop/
 # prot4EST http://nematodes.org/bioinformatics/prot4EST/
 
-DEPEND=dev-lang/perl
-   dev-perl/Time-Progress
-   sci-biology/fasta
-   sci-biology/ssaha2-bin
-   sci-biology/mira
-   sci-biology/emboss
-   sci-biology/bioperl
-   app-arch/pbzip2
+DEPEND=
+   app-arch/pbzip2
+   dev-lang/perl
+   dev-perl/Time-Progress
+   sci-biology/fasta
+   sci-biology/ssaha2-bin
+   sci-biology/mira
+   sci-biology/emboss
+   sci-biology/bioperl
 RDEPEND=${DEPEND}
 
 # more install tricks in ${S}/install.pl



[gentoo-commits] proj/sci:master commit in: /

2015-01-10 Thread Justin Lecher
commit: fe6cc50c3a170cec30479fe5796c257820e53de7
Author: Justin jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:57:07 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:57:07 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fe6cc50c

Merge pull request #313 from marbre/InterMine

Fix InterMine QA issues


 sci-biology/InterMine/ChangeLog | 4 
 sci-biology/InterMine/InterMine-0.98.ebuild | 8 
 2 files changed, 8 insertions(+), 4 deletions(-)



[gentoo-commits] gentoo-x86 commit in net-misc/networkmanager-openvpn: networkmanager-openvpn-1.0.0.ebuild ChangeLog

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 15:24:59

  Modified: ChangeLog
  Added:networkmanager-openvpn-1.0.0.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.51 net-misc/networkmanager-openvpn/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openvpn/ChangeLog?rev=1.51view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openvpn/ChangeLog?rev=1.51content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openvpn/ChangeLog?r1=1.50r2=1.51

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/net-misc/networkmanager-openvpn/ChangeLog,v
retrieving revision 1.50
retrieving revision 1.51
diff -u -r1.50 -r1.51
--- ChangeLog   19 Dec 2014 13:42:46 -  1.50
+++ ChangeLog   10 Jan 2015 15:24:59 -  1.51
@@ -1,6 +1,12 @@
 # ChangeLog for net-misc/networkmanager-openvpn
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/net-misc/networkmanager-openvpn/ChangeLog,v 
1.50 2014/12/19 13:42:46 pacho Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/net-misc/networkmanager-openvpn/ChangeLog,v 
1.51 2015/01/10 15:24:59 pacho Exp $
+
+*networkmanager-openvpn-1.0.0 (10 Jan 2015)
+
+  10 Jan 2015; Pacho Ramos pa...@gentoo.org
+  +networkmanager-openvpn-1.0.0.ebuild:
+  Version bump
 
   19 Dec 2014; Pacho Ramos pa...@gentoo.org
   networkmanager-openvpn-0.9.10.0.ebuild:



1.1  
net-misc/networkmanager-openvpn/networkmanager-openvpn-1.0.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openvpn/networkmanager-openvpn-1.0.0.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openvpn/networkmanager-openvpn-1.0.0.ebuild?rev=1.1content-type=text/plain

Index: networkmanager-openvpn-1.0.0.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager-openvpn/networkmanager-openvpn-1.0.0.ebuild,v
 1.1 2015/01/10 15:24:59 pacho Exp $

EAPI=5
GCONF_DEBUG=no
GNOME_ORG_MODULE=NetworkManager-${PN##*-}

inherit eutils gnome2

DESCRIPTION=NetworkManager OpenVPN plugin
HOMEPAGE=https://wiki.gnome.org/Projects/NetworkManager;

LICENSE=GPL-2+
SLOT=0
KEYWORDS=~amd64 ~arm ~x86
IUSE=gtk test

RDEPEND=
=dev-libs/dbus-glib-0.74
=dev-libs/glib-2.32:2
=net-misc/networkmanager-0.9.10:=
=net-misc/openvpn-2.1_rc9
gtk? (
app-crypt/libsecret
=gnome-extra/nm-applet-0.9.9.0
=x11-libs/gtk+-3.4:3
)

DEPEND=${RDEPEND}
sys-devel/gettext
=dev-util/intltool-0.35
virtual/pkgconfig


src_prepare() {
# Test will fail if the machine doesn't have a particular locale 
installed
# FAIL: (tls-import-data) unexpected 'ca' secret value, upstream bug 
#742708
sed '/test_non_utf8_import (plugin, test_dir)/ d' \
-i properties/tests/test-import-export.c || die sed failed

gnome2_src_prepare
}

src_configure() {
gnome2_src_configure \
--disable-more-warnings \
--disable-static \
--with-dist-version=Gentoo \
$(use_with gtk gnome) \
$(use_with test tests)
}






[gentoo-commits] gentoo-x86 commit in sys-libs/uclibc: uclibc-0.9.33.2-r13.ebuild ChangeLog

2015-01-10 Thread Anthony G. Basile (blueness)
blueness15/01/10 16:26:20

  Modified: ChangeLog
  Added:uclibc-0.9.33.2-r13.ebuild
  Log:
  Adds patch for fallocate needed for =sys-fs/e2fsprogs-1.42.10, bug #516988
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0xF52D4BBA)

Revision  ChangesPath
1.95 sys-libs/uclibc/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-libs/uclibc/ChangeLog?rev=1.95view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-libs/uclibc/ChangeLog?rev=1.95content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-libs/uclibc/ChangeLog?r1=1.94r2=1.95

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/sys-libs/uclibc/ChangeLog,v
retrieving revision 1.94
retrieving revision 1.95
diff -u -r1.94 -r1.95
--- ChangeLog   21 Oct 2014 01:15:17 -  1.94
+++ ChangeLog   10 Jan 2015 16:26:20 -  1.95
@@ -1,6 +1,12 @@
 # ChangeLog for sys-libs/uclibc
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sys-libs/uclibc/ChangeLog,v 1.94 2014/10/21 
01:15:17 blueness Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sys-libs/uclibc/ChangeLog,v 1.95 2015/01/10 
16:26:20 blueness Exp $
+
+*uclibc-0.9.33.2-r13 (10 Jan 2015)
+
+  10 Jan 2015; Anthony G. Basile bluen...@gentoo.org
+  +uclibc-0.9.33.2-r13.ebuild:
+  Adds patch for fallocate needed for =sys-fs/e2fsprogs-1.42.10, bug #516988
 
 *uclibc-0.9.33. (21 Oct 2014)
 



1.1  sys-libs/uclibc/uclibc-0.9.33.2-r13.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-libs/uclibc/uclibc-0.9.33.2-r13.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sys-libs/uclibc/uclibc-0.9.33.2-r13.ebuild?rev=1.1content-type=text/plain

Index: uclibc-0.9.33.2-r13.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sys-libs/uclibc/uclibc-0.9.33.2-r13.ebuild,v 
1.1 2015/01/10 16:26:20 blueness Exp $

inherit eutils flag-o-matic multilib toolchain-funcs savedconfig
if [[ ${PV} ==  ]] ; then
EGIT_REPO_URI=git://git.busybox.net/uClibc
inherit git-2
fi

export CBUILD=${CBUILD:-${CHOST}}
export CTARGET=${CTARGET:-${CHOST}}
if [[ ${CTARGET} == ${CHOST} ]] ; then
if [[ ${CATEGORY/cross-} != ${CATEGORY} ]] ; then
export CTARGET=${CATEGORY/cross-}
fi
fi

MY_P=uClibc-${PV}
DESCRIPTION=C library for developing embedded Linux systems
HOMEPAGE=http://www.uclibc.org/;
if [[ ${PV} !=  ]] ; then
PATCH_VER=15
SRC_URI=http://uclibc.org/downloads/${MY_P}.tar.bz2

${PATCH_VER:+mirror://gentoo/${MY_P}-patches-${PATCH_VER}.tar.bz2}
KEYWORDS=-* ~amd64 ~arm ~m68k ~mips ~ppc ~sh ~sparc ~x86
fi

LICENSE=LGPL-2
SLOT=0
IUSE=debug hardened iconv ipv6 nptl rpc ssp uclibc-compat wordexp 
crosscompile_opts_headers-only
RESTRICT=strip

S=${WORKDIR}/${MY_P}

is_crosscompile() {
[[ ${CHOST} != ${CTARGET} ]]
}
alt_build_kprefix() {
if [[ ${CBUILD} == ${CHOST}  ${CTARGET} == ${CHOST} ]] ; then
echo /usr/include
else
echo /usr/${CTARGET}/usr/include
fi
}

just_headers() {
use crosscompile_opts_headers-only  is_crosscompile
}

uclibc_endian() {
# XXX: this wont work for a toolchain which is bi-endian, but we
#  dont have any such thing at the moment, so not a big deal
touch ${T}/endian.s
$(tc-getAS ${CTARGET}) ${T}/endian.s -o ${T}/endian.o
case $(file ${T}/endian.o) in
* MSB *) echo BIG;;
* LSB *) echo LITTLE;;
*) echo NFC;;
esac
rm -f ${T}/endian.{s,o}
}

pkg_setup() {
if [ ${CTARGET} = ${CHOST} ] ; then
case ${CHOST} in
*-uclinux*|*-uclibc*) ;;
*) die Use sys-devel/crossdev to build a uclibc toolchain ;;
esac
fi
}

check_cpu_opts() {
case ${CTARGET} in
# Need to handle $ABI here w/mips.
mips[1234]*) export UCLIBC_CPU=MIPS_ISA_${CTARGET:4:1};;
sh[2345]*)   export UCLIBC_CPU=SH${CTARGET:2:1};;
i[3456]86*)  export UCLIBC_CPU=${CTARGET:1:1}86;;
# XXX: Should figure out how to handle sparc.
esac

if use nptl ; then
case ${CTARGET} in
i386*)
die Your target has no support for NPTL
;;
esac
fi
}

kconfig_q_opt() {
local flag=$1; shift
case ${flag} in
y|n) ;;
*) flag=$(usex ${flag} y n) ;;
esac

local var=defs_${flag}
 

[gentoo-commits] gentoo-x86 commit in x11-misc/virtualgl: virtualgl-2.3.3.ebuild ChangeLog

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 13:50:26

  Modified: virtualgl-2.3.3.ebuild ChangeLog
  Log:
  Fix deps (#504134 by Matthew Schultz and Eternal Sorrow)
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.5  x11-misc/virtualgl/virtualgl-2.3.3.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/x11-misc/virtualgl/virtualgl-2.3.3.ebuild?rev=1.5view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/x11-misc/virtualgl/virtualgl-2.3.3.ebuild?rev=1.5content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/x11-misc/virtualgl/virtualgl-2.3.3.ebuild?r1=1.4r2=1.5

Index: virtualgl-2.3.3.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/x11-misc/virtualgl/virtualgl-2.3.3.ebuild,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- virtualgl-2.3.3.ebuild  18 Jul 2014 17:35:49 -  1.4
+++ virtualgl-2.3.3.ebuild  10 Jan 2015 13:50:26 -  1.5
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/x11-misc/virtualgl/virtualgl-2.3.3.ebuild,v 
1.4 2014/07/18 17:35:49 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/x11-misc/virtualgl/virtualgl-2.3.3.ebuild,v 
1.5 2015/01/10 13:50:26 pacho Exp $
 
 EAPI=5
 inherit cmake-multilib multilib systemd
@@ -19,11 +19,11 @@
 IUSE=ssl
 
 RDEPEND=
-   ssl? ( dev-libs/openssl )
-   media-libs/libjpeg-turbo
-   x11-libs/libX11
-   x11-libs/libXext
-   x11-libs/libXv
+   ssl? ( dev-libs/openssl[${MULTILIB_USEDEP}] )
+   media-libs/libjpeg-turbo[${MULTILIB_USEDEP}]
+   x11-libs/libX11[${MULTILIB_USEDEP}]
+   x11-libs/libXext[${MULTILIB_USEDEP}]
+   x11-libs/libXv[${MULTILIB_USEDEP}]
amd64? ( abi_x86_32? (
|| (
=media-libs/libjpeg-turbo-1.3.0-r3[abi_x86_32]
@@ -45,8 +45,8 @@
app-emulation/emul-linux-x86-opengl[-abi_x86_32]
)
) )
-   virtual/glu
-   virtual/opengl
+   virtual/glu[${MULTILIB_USEDEP}]
+   virtual/opengl[${MULTILIB_USEDEP}]
 
 DEPEND=${RDEPEND}
 



1.23 x11-misc/virtualgl/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/x11-misc/virtualgl/ChangeLog?rev=1.23view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/x11-misc/virtualgl/ChangeLog?rev=1.23content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/x11-misc/virtualgl/ChangeLog?r1=1.22r2=1.23

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/x11-misc/virtualgl/ChangeLog,v
retrieving revision 1.22
retrieving revision 1.23
diff -u -r1.22 -r1.23
--- ChangeLog   18 Jul 2014 17:35:49 -  1.22
+++ ChangeLog   10 Jan 2015 13:50:26 -  1.23
@@ -1,6 +1,9 @@
 # ChangeLog for x11-misc/virtualgl
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/x11-misc/virtualgl/ChangeLog,v 1.22 
2014/07/18 17:35:49 pacho Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/x11-misc/virtualgl/ChangeLog,v 1.23 
2015/01/10 13:50:26 pacho Exp $
+
+  10 Jan 2015; Pacho Ramos pa...@gentoo.org virtualgl-2.3.3.ebuild:
+  Fix deps (#504134 by Matthew Schultz and Eternal Sorrow)
 
   18 Jul 2014; Pacho Ramos pa...@gentoo.org -virtualgl-2.3.2-r3.ebuild,
   virtualgl-2.3.3.ebuild:






[gentoo-commits] gentoo-x86 commit in net-misc/networkmanager: networkmanager-1.0.0.ebuild ChangeLog

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 14:51:52

  Modified: ChangeLog
  Added:networkmanager-1.0.0.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.222net-misc/networkmanager/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager/ChangeLog?rev=1.222view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager/ChangeLog?rev=1.222content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager/ChangeLog?r1=1.221r2=1.222

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/net-misc/networkmanager/ChangeLog,v
retrieving revision 1.221
retrieving revision 1.222
diff -u -r1.221 -r1.222
--- ChangeLog   8 Jan 2015 10:05:07 -   1.221
+++ ChangeLog   10 Jan 2015 14:51:52 -  1.222
@@ -1,6 +1,13 @@
 # ChangeLog for net-misc/networkmanager
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/net-misc/networkmanager/ChangeLog,v 1.221 
2015/01/08 10:05:07 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/net-misc/networkmanager/ChangeLog,v 1.222 
2015/01/10 14:51:52 pacho Exp $
+
+*networkmanager-1.0.0 (10 Jan 2015)
+
+  10 Jan 2015; Pacho Ramos pa...@gentoo.org
+  +files/networkmanager-1.0.0-find-helpers.patch,
+  +files/networkmanager-1.0.0-lto-switch.patch, +networkmanager-1.0.0.ebuild:
+  Version bump
 
   08 Jan 2015; Pacho Ramos pa...@gentoo.org
   networkmanager-0.9.10.1_pre20141101.ebuild:



1.1  net-misc/networkmanager/networkmanager-1.0.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager/networkmanager-1.0.0.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager/networkmanager-1.0.0.ebuild?rev=1.1content-type=text/plain

Index: networkmanager-1.0.0.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager/networkmanager-1.0.0.ebuild,v 
1.1 2015/01/10 14:51:52 pacho Exp $

EAPI=5
GCONF_DEBUG=no
GNOME_ORG_MODULE=NetworkManager
GNOME2_LA_PUNT=yes
VALA_MIN_API_VERSION=0.18
VALA_USE_DEPEND=vapigen

# Tests need python2, https://bugzilla.gnome.org/show_bug.cgi?id=739448
PYTHON_COMPAT=( python2_7 )

inherit autotools bash-completion-r1 eutils gnome2 linux-info multilib 
python-any-r1 systemd \
user readme.gentoo toolchain-funcs vala versionator virtualx udev

DESCRIPTION=Universal network configuration daemon for laptops, desktops, 
servers and virtualization hosts
HOMEPAGE=https://wiki.gnome.org/Projects/NetworkManager;

LICENSE=GPL-2+
SLOT=0 # add subslot if libnm-util.so.2 or libnm-glib.so.4 bumps soname 
version

IUSE=bluetooth connection-sharing consolekit +dhclient dhcpcd gnutls 
+introspection \
kernel_linux +nss +modemmanager ncurses +ppp resolvconf selinux systemd teamd 
test \
vala +wext +wifi zeroconf # wimax

KEYWORDS=~alpha ~amd64 ~arm ~sparc ~x86

REQUIRED_USE=
modemmanager? ( ppp )
^^ ( nss gnutls )
^^ ( dhclient dhcpcd )


# gobject-introspection-0.10.3 is needed due to gnome bug 642300
# wpa_supplicant-0.7.3-r3 is needed due to bug 359271
# TODO: Qt support?
COMMON_DEPEND=
=sys-apps/dbus-1.2
=dev-libs/dbus-glib-0.100
=dev-libs/glib-2.32:2
=dev-libs/libnl-3.2.8:3=
=sys-auth/polkit-0.106
net-libs/libndp
=net-libs/libsoup-2.26:2.4=
net-misc/iputils
sys-libs/readline
=virtual/libgudev-165:=
bluetooth? ( =net-wireless/bluez-5 )
connection-sharing? (
net-dns/dnsmasq[dhcp]
net-firewall/iptables )
gnutls? (
dev-libs/libgcrypt:0=
net-libs/gnutls:= )
modemmanager? ( =net-misc/modemmanager-0.7.991 )
ncurses? ( =dev-libs/newt-0.52.15 )
nss? ( =dev-libs/nss-3.11:= )
dhclient? ( =net-misc/dhcp-4*[client] )
dhcpcd? ( =net-misc/dhcpcd-4.0.0_rc3 )
introspection? ( =dev-libs/gobject-introspection-0.10.3 )
ppp? ( =net-dialup/ppp-2.4.5:=[ipv6] net-dialup/rp-pppoe )
resolvconf? ( net-dns/openresolv )
systemd? ( =sys-apps/systemd-209:0= )
teamd? ( =net-misc/libteam-1.9 )
zeroconf? ( net-dns/avahi:=[autoipd] )
|| ( sys-power/upower sys-power/upower-pm-utils =sys-apps/systemd-209 )

RDEPEND=${COMMON_DEPEND}
consolekit? ( sys-auth/consolekit )
wifi? ( =net-wireless/wpa_supplicant-0.7.3-r3[dbus] )

DEPEND=${COMMON_DEPEND}
dev-util/gtk-doc-am
=dev-util/intltool-0.40
=sys-devel/gettext-0.17
=sys-kernel/linux-headers-2.6.29

[gentoo-commits] gentoo-x86 commit in net-misc/networkmanager/files: networkmanager-1.0.0-find-helpers.patch networkmanager-1.0.0-lto-switch.patch

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 14:51:52

  Added:networkmanager-1.0.0-find-helpers.patch
networkmanager-1.0.0-lto-switch.patch
  Log:
  Version bump
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.1  
net-misc/networkmanager/files/networkmanager-1.0.0-find-helpers.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager/files/networkmanager-1.0.0-find-helpers.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager/files/networkmanager-1.0.0-find-helpers.patch?rev=1.1content-type=text/plain

Index: networkmanager-1.0.0-find-helpers.patch
===
From 6f643d2761650e53fd3b647526110a8473138b5d Mon Sep 17 00:00:00 2001
From: Thomas Haller thal...@redhat.com
Date: Thu, 8 Jan 2015 11:55:50 +0100
Subject: core: add /bin to the default search path

https://bugzilla.gnome.org/show_bug.cgi?id=742576
(cherry picked from commit abbca50ca9d552a28eca792f12ec618df6128fff)

diff --git a/src/NetworkManagerUtils.c b/src/NetworkManagerUtils.c
index 2c291cd..6747b65 100644
--- a/src/NetworkManagerUtils.c
+++ b/src/NetworkManagerUtils.c
@@ -814,6 +814,7 @@ const char *const NM_PATHS_DEFAULT[] = {
/sbin/,
/usr/sbin/,
/usr/local/sbin/,
+   /bin/,
/usr/bin/,
/usr/local/bin/,
NULL,
-- 
cgit v0.10.2




1.1  
net-misc/networkmanager/files/networkmanager-1.0.0-lto-switch.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager/files/networkmanager-1.0.0-lto-switch.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager/files/networkmanager-1.0.0-lto-switch.patch?rev=1.1content-type=text/plain

Index: networkmanager-1.0.0-lto-switch.patch
===
From cda2802fe960737abb4623166ca4f75a63b5fe5a Mon Sep 17 00:00:00 2001
From: Thomas Haller thal...@redhat.com
Date: Thu, 8 Jan 2015 12:01:32 +0100
Subject: build: fix --enable-lto configure option to allow disabling option
 explicitly

When specifying '--enable-lto=anything' or '--disable-lto',
the configure script would always set enable_lto=yes.

The only way to disable lto, was *not* specifying the
configure option.

https://bugzilla.gnome.org/show_bug.cgi?id=742575
(cherry picked from commit 6eccfda0face594f86dea495d2ed2546b0d37e77)

diff --git a/configure.ac b/configure.ac
index b6bf38e..b407686 100644
--- a/configure.ac
+++ b/configure.ac
@@ -821,10 +821,11 @@ AM_CONDITIONAL(BUILD_NMTUI, test $build_nmtui = yes)
 
 NM_COMPILER_WARNINGS
 
-AC_ARG_ENABLE(lto, AS_HELP_STRING([--enable-lto], [Enable Link Time 
Optimization for smaller size (default: no)]),
-  [enable_lto=yes], [enable_lto=no])
+AC_ARG_ENABLE(lto, AS_HELP_STRING([--enable-lto], [Enable Link Time 
Optimization for smaller size (default: no)]))
 if (test ${enable_lto} = yes); then
 CFLAGS=-flto $CFLAGS
+else
+enable_lto='no'
 fi
 
 
-- 
cgit v0.10.2







[gentoo-commits] gentoo-x86 commit in media-sound/pulseaudio: pulseaudio-5.0-r7.ebuild ChangeLog

2015-01-10 Thread Michal Gorny (mgorny)
mgorny  15/01/10 11:09:59

  Modified: pulseaudio-5.0-r7.ebuild ChangeLog
  Log:
  Call gnome2_environment_reset to fix sandbox access violations, bug #534582.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
EFB4464E!)

Revision  ChangesPath
1.2  media-sound/pulseaudio/pulseaudio-5.0-r7.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/pulseaudio/pulseaudio-5.0-r7.ebuild?rev=1.2view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/pulseaudio/pulseaudio-5.0-r7.ebuild?rev=1.2content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/pulseaudio/pulseaudio-5.0-r7.ebuild?r1=1.1r2=1.2

Index: pulseaudio-5.0-r7.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/media-sound/pulseaudio/pulseaudio-5.0-r7.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- pulseaudio-5.0-r7.ebuild8 Jan 2015 14:05:50 -   1.1
+++ pulseaudio-5.0-r7.ebuild10 Jan 2015 11:09:59 -  1.2
@@ -1,9 +1,9 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/media-sound/pulseaudio/pulseaudio-5.0-r7.ebuild,v 1.1 
2015/01/08 14:05:50 leio Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/media-sound/pulseaudio/pulseaudio-5.0-r7.ebuild,v 1.2 
2015/01/10 11:09:59 mgorny Exp $
 
 EAPI=5
-inherit autotools bash-completion-r1 eutils flag-o-matic linux-info 
readme.gentoo systemd user versionator udev multilib-minimal
+inherit autotools bash-completion-r1 eutils flag-o-matic gnome2-utils 
linux-info readme.gentoo systemd user versionator udev multilib-minimal
 
 DESCRIPTION=A networked sound server with an advanced plugin system
 HOMEPAGE=http://www.pulseaudio.org/;
@@ -120,6 +120,7 @@
 }
 
 pkg_setup() {
+   gnome2_environment_reset
linux-info_pkg_setup
 
enewgroup audio 18 # Just make sure it exists



1.369media-sound/pulseaudio/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/pulseaudio/ChangeLog?rev=1.369view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/pulseaudio/ChangeLog?rev=1.369content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/pulseaudio/ChangeLog?r1=1.368r2=1.369

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-sound/pulseaudio/ChangeLog,v
retrieving revision 1.368
retrieving revision 1.369
diff -u -r1.368 -r1.369
--- ChangeLog   9 Jan 2015 22:15:38 -   1.368
+++ ChangeLog   10 Jan 2015 11:09:59 -  1.369
@@ -1,6 +1,9 @@
 # ChangeLog for media-sound/pulseaudio
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-sound/pulseaudio/ChangeLog,v 1.368 
2015/01/09 22:15:38 zerochaos Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-sound/pulseaudio/ChangeLog,v 1.369 
2015/01/10 11:09:59 mgorny Exp $
+
+  10 Jan 2015; Michał Górny mgo...@gentoo.org pulseaudio-5.0-r7.ebuild:
+  Call gnome2_environment_reset to fix sandbox access violations, bug #534582.
 
 *pulseaudio-5.99.2-r1 (09 Jan 2015)
 






[gentoo-commits] gentoo-x86 commit in profiles: ChangeLog package.mask

2015-01-10 Thread Chi-Thanh Christopher Nguyen (chithanh)
chithanh15/01/10 13:44:29

  Modified: ChangeLog package.mask
  Log:
  Add mask for old and vulnerable xorg-server.

Revision  ChangesPath
1.9675   profiles/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?rev=1.9675view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?rev=1.9675content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?r1=1.9674r2=1.9675

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v
retrieving revision 1.9674
retrieving revision 1.9675
diff -u -r1.9674 -r1.9675
--- ChangeLog   10 Jan 2015 06:46:51 -  1.9674
+++ ChangeLog   10 Jan 2015 13:44:28 -  1.9675
@@ -1,11 +1,15 @@
 # ChangeLog for profile directory
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v 1.9674 2015/01/10 
06:46:51 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v 1.9675 2015/01/10 
13:44:28 chithanh Exp $
 #
 # This ChangeLog should include records for all changes in profiles directory.
 # Only typo fixes which don't affect portage/repoman behaviour could be avoided
 # here. If in doubt put a record here!
 
+  10 Jan 2015; Chí-Thanh Christopher Nguyễn chith...@gentoo.org
+  package.mask:
+  Add mask for old and vulnerable xorg-server.
+
   10 Jan 2015; Tim Harder radher...@gentoo.org package.mask:
   Mask dev-libs/protobuf-c-1.1.0 until protobuf-2.6.0 is unmasked.
 



1.16281  profiles/package.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16281view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16281content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?r1=1.16280r2=1.16281

Index: package.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/package.mask,v
retrieving revision 1.16280
retrieving revision 1.16281
diff -u -r1.16280 -r1.16281
--- package.mask10 Jan 2015 06:46:51 -  1.16280
+++ package.mask10 Jan 2015 13:44:28 -  1.16281
@@ -1,5 +1,5 @@
 
-# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16280 2015/01/10 
06:46:51 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16281 2015/01/10 
13:44:28 chithanh Exp $
 #
 # When you add an entry to the top of this file, add your name, the date, and
 # an explanation of why something is getting masked. Please be extremely
@@ -30,6 +30,27 @@
 
 #--- END OF EXAMPLES ---
 
+# Chí-Thanh Christopher Nguyễn chith...@gentoo.org (10 Jan 2015)
+# obsolete and vulnerable, bug #532086
+# removal in 30 days
+=x11-base/xorg-server-1.9*
+=x11-base/xorg-server-1.10*
+=x11-base/xorg-server-1.11*
+=x11-base/xorg-server-1.13*
+=x11-base/xorg-server-1.14*
+
+# Chí-Thanh Christopher Nguyễn chith...@gentoo.org (10 Jan 2015)
+# requires obsolete and vulnerable xorg-server, bug #532086
+# removal in 30 days
+x11-drivers/psb-firmware
+x11-drivers/xf86-input-citron
+x11-drivers/xf86-video-cyrix
+x11-drivers/xf86-video-impact
+x11-drivers/xf86-video-nsc
+x11-drivers/xf86-video-sunbw2
+x11-libs/libdrm-poulsbo
+x11-libs/xpsb-glx
+
 # Tim Harder radher...@gentoo.org (10 Jan 2015)
 # Masked until protobuf-2.6.0 is unmasked
 =dev-libs/protobuf-c-1.1.0






[gentoo-commits] gentoo-x86 commit in media-libs/gst-rtsp-server: ChangeLog gst-rtsp-server-0.10.8-r1.ebuild

2015-01-10 Thread Gilles Dartiguelongue (eva)
eva 15/01/10 14:15:26

  Modified: ChangeLog
  Added:gst-rtsp-server-0.10.8-r1.ebuild
  Log:
  Bump to EAPI=5, use python-r1 eclass, use gstreamer eclass for default 
configure arguments and multilib support, fix dependencies, do install prebuilt 
gtk-doc documentation, install examples on demand.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
C6085806)

Revision  ChangesPath
1.11 media-libs/gst-rtsp-server/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/gst-rtsp-server/ChangeLog?rev=1.11view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/gst-rtsp-server/ChangeLog?rev=1.11content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/gst-rtsp-server/ChangeLog?r1=1.10r2=1.11

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-libs/gst-rtsp-server/ChangeLog,v
retrieving revision 1.10
retrieving revision 1.11
diff -u -r1.10 -r1.11
--- ChangeLog   4 Apr 2014 01:11:21 -   1.10
+++ ChangeLog   10 Jan 2015 14:15:26 -  1.11
@@ -1,6 +1,12 @@
 # ChangeLog for media-libs/gst-rtsp-server
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-libs/gst-rtsp-server/ChangeLog,v 1.10 
2014/04/04 01:11:21 mattst88 Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-libs/gst-rtsp-server/ChangeLog,v 1.11 
2015/01/10 14:15:26 eva Exp $
+
+  10 Jan 2015; Gilles Dartiguelongue e...@gentoo.org
+  +gst-rtsp-server-0.10.8-r1.ebuild:
+  Bump to EAPI=5, use python-r1 eclass, use gstreamer eclass for default
+  configure arguments and multilib support, fix dependencies, do install
+  prebuilt gtk-doc documentation, install examples on demand.
 
   04 Apr 2014; Matt Turner matts...@gentoo.org metadata.xml:
   Remove myself as maintainer.



1.1  media-libs/gst-rtsp-server/gst-rtsp-server-0.10.8-r1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/gst-rtsp-server/gst-rtsp-server-0.10.8-r1.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/gst-rtsp-server/gst-rtsp-server-0.10.8-r1.ebuild?rev=1.1content-type=text/plain

Index: gst-rtsp-server-0.10.8-r1.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/media-libs/gst-rtsp-server/gst-rtsp-server-0.10.8-r1.ebuild,v
 1.1 2015/01/10 14:15:26 eva Exp $

EAPI=5
PYTHON_COMPAT=( python2_7 )

inherit eutils gstreamer python-r1

DESCRIPTION=A GStreamer based RTSP server
HOMEPAGE=http://people.freedesktop.org/~wtay/;
SRC_URI=http://gstreamer.freedesktop.org/src/${PN}/${PN/-server/}-${PV}.tar.bz2;

LICENSE=GPL-2
SLOT=0.10
KEYWORDS=~amd64 ~x86
IUSE=examples +introspection nls python static-libs test vala
REQUIRED_USE=python? ( ${PYTHON_REQUIRED_USE} )

S=${WORKDIR}/${P/-server/}

# ./configure is broken, so PYGOBJECT_REQ must be defined
PYGOBJECT_REQ=2.11.2

# FIXME: check should depend on USE=test but check is losy
# libxml2 required in python binding
RDEPEND=
=dev-libs/glib-2.10.0:2[${MULTILIB_USEDEP}]
dev-libs/libxml2:2[python,${PYTHON_USEDEP},${MULTILIB_USEDEP}]
=dev-python/pygobject-${PYGOBJECT_REQ}:2[${PYTHON_USEDEP}]
=media-libs/gstreamer-0.10.29:0.10[introspection?,${MULTILIB_USEDEP}]

=media-libs/gst-plugins-base-0.10.29:0.10[introspection?,${MULTILIB_USEDEP}]

introspection? ( =dev-libs/gobject-introspection-0.6.3 )
python? ( dev-python/gst-python:0.10[${PYTHON_USEDEP}] )
vala? ( dev-lang/vala )

DEPEND=${RDEPEND}
=dev-libs/check-0.9.2
=dev-util/gtk-doc-am-1.3
virtual/pkgconfig
nls? ( =sys-devel/gettext-0.17 )


# Does not provide any unittest
RESTRICT=test

src_prepare() {
if ! use test; then
# don't waste time building tests
sed -e 's/^\(SUBDIRS =.*\)tests\(.*\)$/\1\2/' \
-i Makefile.am Makefile.in \
|| die
fi

# don't waste time building examples
sed -e 's/^\(SUBDIRS =.*\)examples\(.*\)$/\1\2/' \
 -i Makefile.am Makefile.in \
|| die
}

multilib_src_configure() {
if use python ; then
python_setup
fi

# debug: only adds -g to CFLAGS
# docbook: nothing behing that switch
gstreamer_multilib_src_configure \
--disable-docbook \
--disable-gtk-doc \
$(multilib_native_use_enable introspection) \
$(use_enable nls) \
$(use_enable static-libs static) \
$(use_enable vala) \
   

[gentoo-commits] proj/sci:master commit in: licenses/, sci-biology/trans-abyss/

2015-01-10 Thread Justin Lecher
commit: 9ad55d55245564b9b3b2f7d6592dbdee7678ea4d
Author: Marius Brehler marbre AT linux DOT sungazer DOT de
AuthorDate: Sat Jan 10 14:35:20 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:35:20 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=9ad55d55

sci-biology/trans-abys: Fix license and keywords

---
 licenses/bcca_2010   | 453 +++
 sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild |   5 +-
 2 files changed, 456 insertions(+), 2 deletions(-)

diff --git a/licenses/bcca_2010 b/licenses/bcca_2010
new file mode 100644
index 000..c8874f8
--- /dev/null
+++ b/licenses/bcca_2010
@@ -0,0 +1,453 @@
+BC CANCER AGENCY SOFTWARE LICENSE AGREEMENT (ACADEMIC USE)
+
+CAREFULLY READ THE FOLLOWING TERMS AND CONDITIONS. This License
+
+Agreement (the Agreement) is a legal contract between you, your
+
+employer, educational institution or organization (collectively, You)
+
+and the British Columbia Cancer Agency (BCCA) with respect to the
+
+license of the software, including all associated documentation
+
+(collectively, the Product).
+
+ 
+
+BCCA is willing to license the Product to You only if You accept the
+
+terms and conditions of this Agreement. By clicking on the I ACCEPT
+
+button, or by copying, downloading, accessing or otherwise using the
+
+Product, You automatically agree to be bound by the terms of this
+
+Agreement. IF YOU DO NOT WISH TO BE BOUND BY THE TERMS OF THIS
+
+AGREEMENT, DO NOT COPY, DOWNLOAD, ACCESS OR OTHERWISE USE THE
+
+PRODUCT.
+
+ 
+
+1. AUTHORITY: In the event that You are an educational institution or
+
+organization, Your representative who is clicking the I ACCEPT
+
+button, or otherwise copying, downloading, accessing or using the
+
+Product hereby, in their personal capacity, represents and warrants
+
+that they possess the legal authority to enter into this Agreement
+
+on Your behalf and to bind You to the terms of this Agreement.
+
+ 
+
+2. LICENSE TO USE: BCCA hereby grants to You a personal, non-exclusive,
+
+non-transferable, limited license to use the Product solely for
+
+internal, non-commercial use for non-profit research or educational
+
+purposes only on the terms and conditions contained in this Agreement.
+
+The Product may be installed at a single site at Your premises only. A
+
+copy of the Product installed on a single common machine or cluster of
+
+machines may be shared for internal use by Qualified Users only. In
+
+order to be a Qualified User, an individual must be a student,
+
+researcher, professor, instructor or staff member of a non-profit
+
+educational institution or organization who uses the Product solely for
+
+non-profit research or educational purposes.
+
+ 
+
+3. RESTRICTIONS: You acknowledge and agree that You shall not, and
+
+shall not authorize any third party to:
+
+(a) make copies of the Product, except as provided in Section 2 and
+
+except for a single backup copy, and any such copy together with the
+
+original must be kept in Your possession or control;
+
+(b) modify, adapt, decompile, disassemble, translate into another
+
+computer language, create derivative works of, or otherwise reverse
+
+engineer the Product, or disclose any trade secrets relating to the
+
+Product, except as permitted in Section 5;
+
+(c) license, sublicense, distribute, sell, lease, transfer, assign,
+
+trade, rent or publish the Product or any part thereof and/or copies
+
+thereof, to any third party;
+
+(d) use the Product to process any data other than Your own;
+
+(e) use the Product or any part thereof for any commercial or
+
+for-profit purpose or any other purpose other than as permitted in
+
+Section 2; or
+
+(f) use, without its express permission, the name of BCCA.
+
+ 
+
+4. INTELLECTUAL PROPERTY RIGHTS: Subject to Section 5 below, all
+
+patents, copyrights, trade secrets, service marks, trademarks and
+
+other proprietary rights in or related to the Product and any
+
+improvements, modifications and enhancements thereof are and will
+
+remain the exclusive property of BCCA or its licensors. You agree
+
+that You will not, either during or after the termination of this
+
+Agreement, contest or challenge the title to or the intellectual
+
+property rights of BCCA or its licensors in the Product or any
+
+portion thereof.
+
+ 
+
+5. OWNERSHIP OF IMPROVEMENTS: In the event that the Product, in the
+
+form provided to You, includes source code (the Source Code),
+
+You are entitled to make improvements, modifications and
+
+enhancements to the Source Code (collectively, Improvements)
+
+which Improvements are to be used by You for non-profit research
+
+and educational purposes only and You shall be the owner of those
+
+Improvements that You directly make and of all intellectual
+
+property rights to such Improvements, subject to the foregoing
+
+limits on Your use and distribution of such Improvements. You
+
+hereby grant to 

[gentoo-commits] proj/sci:master commit in: sci-biology/ESTate/

2015-01-10 Thread Justin Lecher
commit: fb4ef931e8f0177f06753635416595180b789995
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:17:58 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:17:58 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=fb4ef931

sci-biology/ESTate: Soma QA and polishing

Package-Manager: portage-2.2.15

---
 sci-biology/ESTate/ChangeLog |  3 +++
 sci-biology/ESTate/ESTate-0.5.ebuild | 28 +++-
 2 files changed, 22 insertions(+), 9 deletions(-)

diff --git a/sci-biology/ESTate/ChangeLog b/sci-biology/ESTate/ChangeLog
index 0e86bdb..879e7b4 100644
--- a/sci-biology/ESTate/ChangeLog
+++ b/sci-biology/ESTate/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org ESTate-0.5.ebuild:
+  Soma QA and polishing
+
   09 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz ESTate-0.5.ebuild:
   improve description and emphasize the ORF finder can overcome frameshifts in
   CDS

diff --git a/sci-biology/ESTate/ESTate-0.5.ebuild 
b/sci-biology/ESTate/ESTate-0.5.ebuild
index 3e459b0..1622516 100644
--- a/sci-biology/ESTate/ESTate-0.5.ebuild
+++ b/sci-biology/ESTate/ESTate-0.5.ebuild
@@ -4,9 +4,12 @@
 
 EAPI=5
 
-DESCRIPTION=ORF finding despite frameshifts, EST clustering (framefinder, 
estcluster, usage counter, revcomp and translate)
+inherit eutils
+
+DESCRIPTION=ORF finding despite frameshifts, EST clustering
 HOMEPAGE=http://www.ebi.ac.uk/~guy/estate;
-SRC_URI=http://www.ebi.ac.uk/~guy/estate/estate.tar.gz
+SRC_URI=
+   http://www.ebi.ac.uk/~guy/estate/estate.tar.gz
http://www.ebi.ac.uk/~guy/estate/thesis.ps.gz;
 
 LICENSE=GPL-2
@@ -14,23 +17,30 @@ SLOT=0
 KEYWORDS=~amd64
 IUSE=
 
-DEPEND=
-RDEPEND=${DEPEND}
-
 S=${WORKDIR}/estate
 
 src_prepare(){
-   sed -e s/^CC/#CC/ -e s/^LDFLAGS/#LDFLAGS/ -e s/^CFLAGS/#CFLAGS/ 
-e s/LDFLAGS/CFLAGS/ -i src/Makefile || die
+   sed \
+   -e s/^CC/#CC/ \
+   -e s/^LDFLAGS/#LDFLAGS/ \
+   -e s/^CFLAGS/#CFLAGS/ \
+   -e s/LDFLAGS/CFLAGS/ \
+   -i src/Makefile || die
 }
 
 src_install(){
dobin bin/*
doman doc/man/man1/*.1 doc/man/man7/*.7
+
insinto /usr/share/ESTate/etc
doins etc/ESTaterc
+
insinto /usr/share/ESTate/example
doins example/embl59* example/drosophila*
-   dodoc ANNOUNCE.txt README.txt
-   dodoc ${DISTDIR}/thesis.ps.gz
-   einfo Additionally you may want to install sci-biology/wcd which can 
be used by ESTate
+
+   dodoc ANNOUNCE.txt README.txt ${DISTDIR}/thesis.ps.gz
+}
+
+pkg_postinst() {
+   optfeature additional features sci-biology/wcd
 }



[gentoo-commits] proj/sci:master commit in: sci-biology/ePCR/

2015-01-10 Thread Justin Lecher
commit: 0a017f65453a6183ac6b8ffbbc51ea4cab3951ab
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:26:05 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:26:05 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0a017f65

sci-biology/ePCR: Fix license

Package-Manager: portage-2.2.15

---
 sci-biology/ePCR/ChangeLog  |  7 +++
 sci-biology/ePCR/ePCR-2.3.12.ebuild | 14 +++---
 2 files changed, 14 insertions(+), 7 deletions(-)

diff --git a/sci-biology/ePCR/ChangeLog b/sci-biology/ePCR/ChangeLog
new file mode 100644
index 000..a7a7a0c
--- /dev/null
+++ b/sci-biology/ePCR/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/ePCR
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  10 Jan 2015; Justin Lecher j...@gentoo.org ePCR-2.3.12.ebuild:
+  Fix license
+

diff --git a/sci-biology/ePCR/ePCR-2.3.12.ebuild 
b/sci-biology/ePCR/ePCR-2.3.12.ebuild
index bb82fa3..58fb664 100644
--- a/sci-biology/ePCR/ePCR-2.3.12.ebuild
+++ b/sci-biology/ePCR/ePCR-2.3.12.ebuild
@@ -1,16 +1,16 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=3
+EAPI=5
 
 inherit eutils
 
-DESCRIPTION=Search for sub-sequences matching PCR primers with correct order, 
orientation, and spacing
-HOMEPAGE=http://www.ncbi.nlm.nih.gov/projects/e-pcr/;
+DESCRIPTION=Search for sub-sequences matching PCR primers
+HOMEPAGE=http://www.ncbi.nlm.nih.gov/tools/epcr/;
 SRC_URI=ftp://ftp.ncbi.nlm.nih.gov/pub/schuler/e-PCR/e-PCR-${PV}-src.tar.gz;
 
-LICENSE=
+LICENSE=public-domain
 SLOT=0
 KEYWORDS=
 IUSE=
@@ -21,11 +21,11 @@ RDEPEND=${DEPEND}
 S=${WORKDIR}/e-PCR-${PV}
 
 src_prepare(){
-   epatch ${FILESDIR}/config.mk.patch
+   epatch ${FILESDIR}/config.mk.patch
 }
 
 src_compile(){
-   make -j1 srcdir=${S} objdir=${S} || die make -j1 failed
+   emake -j1 srcdir=${S} objdir=${S}
 }
 
 src_install(){



[gentoo-commits] proj/sci:master commit in: sci-biology/pvmsx/

2015-01-10 Thread Justin Lecher
commit: 1addc38c5ff55f17bdb2da77ecf3463f76463f50
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:22:49 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:22:49 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1addc38c

sci-biology/pvmsx: Soma QA and polishing

Package-Manager: portage-2.2.15

---
 sci-biology/pvmsx/ChangeLog|  7 +++
 sci-biology/pvmsx/metadata.xml | 10 +-
 sci-biology/pvmsx/pvmsx-0.1.ebuild | 36 +---
 3 files changed, 29 insertions(+), 24 deletions(-)

diff --git a/sci-biology/pvmsx/ChangeLog b/sci-biology/pvmsx/ChangeLog
new file mode 100644
index 000..506319d
--- /dev/null
+++ b/sci-biology/pvmsx/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/pvmsx
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  10 Jan 2015; Justin Lecher j...@gentoo.org pvmsx-0.1.ebuild, metadata.xml:
+  Soma QA and polishing
+

diff --git a/sci-biology/pvmsx/metadata.xml b/sci-biology/pvmsx/metadata.xml
index 07b5255..2bc8930 100644
--- a/sci-biology/pvmsx/metadata.xml
+++ b/sci-biology/pvmsx/metadata.xml
@@ -1,9 +1,9 @@
 ?xml version=1.0 encoding=UTF-8?
 !DOCTYPE pkgmetadata SYSTEM http://www.gentoo.org/dtd/metadata.dtd;
 pkgmetadata
-   herdsci-biology/herd
-   maintainer
-   emailmmokr...@fold.natur.cuni.cz/email
-   nameMartin Mokrejs/name
-   /maintainer
+  herdsci-biology/herd
+  maintainer
+emailmmokr...@fold.natur.cuni.cz/email
+nameMartin Mokrejs/name
+  /maintainer
 /pkgmetadata

diff --git a/sci-biology/pvmsx/pvmsx-0.1.ebuild 
b/sci-biology/pvmsx/pvmsx-0.1.ebuild
index b194f08..feac0d2 100644
--- a/sci-biology/pvmsx/pvmsx-0.1.ebuild
+++ b/sci-biology/pvmsx/pvmsx-0.1.ebuild
@@ -4,43 +4,41 @@
 
 EAPI=5
 
-DESCRIPTION=parallel multi-FASTA file processing tool using PVM from TIGR 
Gene Indices project tools, an alternative to psx
+DESCRIPTION=Parallel multi-FASTA file processing tool
 HOMEPAGE=http://compbio.dfci.harvard.edu/tgi/software/;
-SRC_URI=ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz
-   
ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/cdbfasta.tar.gz;
+SRC_URI=
+   ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/${PN}.tar.gz
+   
ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/tgicl/cdbfasta.tar.gz;
 
 LICENSE=Artistic
 SLOT=0
 KEYWORDS=~amd64 ~x86
 IUSE=
 
-DEPEND=sys-cluster/pvm
-RDEPEND=${DEPEND}
+#DEPEND=sys-cluster/pvm
+#RDEPEND=${DEPEND}
 
 S=${WORKDIR}
 
-src_unpack(){
-   mkdir ${PN} || die
-   cd ${PN} || die Failed to chdir
-   unpack ${PN}.tar.gz || die
-}
-
 src_prepare() {
# we need gclib from cdbfasta.tar.gz bundle which has fewer files than 
tgi_cpp_library.tar.gz wbut has e.g. GStr.h
-   sed -i 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT 
\${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' ${S}/${PN}/Makefile || die Failed to 
run sed
-   sed -i 's#GCLDIR := ../gclib#GCLDIR := ../cdbfasta/gclib#' 
${S}/${PN}/Makefile || die
-   sed -i s#-I-#-iquote# ${S}/${PN}/Makefile
-   cd ${PN} || die
+   sed \
+   -e 's/CFLAGS[ ]*=/CFLAGS :=/; s/-D_REENTRANT/-D_REENTRANT 
\${CFLAGS}/; s/CFLAGS[ ]*:=[ ]*-O2$//' \
+   -i ${S}/Makefile || die Failed to run sed
+   sed \
+   -e 's#GCLDIR := ../gclib#GCLDIR := ../cdbfasta/gclib#' \
+   -i ${S}/Makefile || die
+   sed \
+   -e s#-I-#-iquote# \
+   -i ${S}/Makefile || die
ln -s ../cdbfasta/gcl . || die Cannot make a softlink
 }
 
 src_compile() {
-   cd ${PN} || die
-   emake || die emake failed in ${S}/${PN}
+   emake
 }
 
 src_install() {
-   cd ${PN} || die
-   dobin ${PN} || die Failed to install ${PN} binary
+   dobin ${PN}
newdoc README README.${PN}
 }



[gentoo-commits] proj/sci:master commit in: sci-biology/trans-abyss/

2015-01-10 Thread Justin Lecher
commit: df448be0623dea0474f8943cb2de92e6774a6ea3
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:41:16 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:41:16 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=df448be0

sci-biology/trans-abyss: Soma polishing

Package-Manager: portage-2.2.15

---
 sci-biology/trans-abyss/ChangeLog| 3 +++
 sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild | 2 +-
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/sci-biology/trans-abyss/ChangeLog 
b/sci-biology/trans-abyss/ChangeLog
index 47ce379..5268abe 100644
--- a/sci-biology/trans-abyss/ChangeLog
+++ b/sci-biology/trans-abyss/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org trans-abyss-1.4.8.ebuild:
+  Soma polishing
+
 *trans-abyss-1.4.8 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz

diff --git a/sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild 
b/sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild
index 9d6a250..76bb799 100644
--- a/sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild
+++ b/sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild
@@ -6,7 +6,7 @@ EAPI=5
 
 DESCRIPTION=Analyze and combine multiple assemblies from abyss
 HOMEPAGE=http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss;
-SRC_URI=http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/${PV}/trans-ABySS-v${PV}_20130916.tar.gz;
+SRC_URI=http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss/releases/${PV}/trans-ABySS-v${PV}_20130916.tar.gz;
 
 # http://www.bcgsc.ca/platform/bioinfo/license/bcca_2010
 LICENSE=bcca_2010



[gentoo-commits] gentoo commit in src/patchsets/uclibc/0.9.33.2: 21_all_fallocate.patch 22_all_endian_macros.patch

2015-01-10 Thread Anthony G. Basile (blueness)
blueness15/01/10 15:20:56

  Added:21_all_fallocate.patch 22_all_endian_macros.patch
  Log:
  Add fallocate from upstream, bug #516988

Revision  ChangesPath
1.1  src/patchsets/uclibc/0.9.33.2/21_all_fallocate.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo/src/patchsets/uclibc/0.9.33.2/21_all_fallocate.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo/src/patchsets/uclibc/0.9.33.2/21_all_fallocate.patch?rev=1.1content-type=text/plain

Index: 21_all_fallocate.patch
===
From f99df0f182498402a1f267b3f419a5bda864ad85 Mon Sep 17 00:00:00 2001
From: Anthony G. Basile bluen...@gentoo.org
Date: Tue, 16 Sep 2014 07:24:28 -0400
Subject: [PATCH] libc: backport fallocate() and fallocate64()

This is a backport of commit 33a12b5 for the 0.9.33 branch.

Signed-off-by: Anthony G. Basile bluen...@gentoo.org
Signed-off-by: Bernhard Reutner-Fischer rep.dot@gmail.com
---
 extra/Configs/Config.in   |   4 +-
 include/fcntl.h   |  32 +
 libc/sysdeps/linux/common/Makefile.in |   4 +
 libc/sysdeps/linux/common/fallocate.c |  48 
 libc/sysdeps/linux/common/fallocate64.c   |  42 +++
 libc/sysdeps/linux/common/posix_fallocate.c   |  22 +---
 libc/sysdeps/linux/common/posix_fallocate64.c |  17 +--
 test/.gitignore   |   2 +
 test/unistd/Makefile.in   |  14 ++-
 test/unistd/tst-fallocate.c   | 166 ++
 test/unistd/tst-fallocate64.c |   2 +
 11 files changed, 315 insertions(+), 38 deletions(-)
 create mode 100644 libc/sysdeps/linux/common/fallocate.c
 create mode 100644 libc/sysdeps/linux/common/fallocate64.c
 create mode 100644 test/unistd/tst-fallocate.c
 create mode 100644 test/unistd/tst-fallocate64.c

diff --git a/extra/Configs/Config.in b/extra/Configs/Config.in
index c2f2fc7..0792002 100644
--- a/extra/Configs/Config.in
+++ b/extra/Configs/Config.in
@@ -952,8 +952,8 @@ config UCLIBC_LINUX_SPECIFIC
default y
help
  accept4(), bdflush(),
- capget(), capset(), eventfd(), fstatfs(),
- inotify_*(), ioperm(), iopl(),
+ capget(), capset(), eventfd(), fallocate(),
+ fstatfs(), inotify_*(), ioperm(), iopl(),
  madvise(), modify_ldt(), pipe2(), personality(),
  prctl()/arch_prctl(), pivot_root(), modify_ldt(),
  ppoll(), readahead(), reboot(), remap_file_pages(),
diff --git a/include/fcntl.h b/include/fcntl.h
index c4a47af..0d0fa8f 100644
--- a/include/fcntl.h
+++ b/include/fcntl.h
@@ -237,6 +237,38 @@ extern int __fcntl_nocancel (int fd, int cmd, ...);
 libc_hidden_proto(__fcntl_nocancel)
 #endif
 
+#if (defined __UCLIBC_LINUX_SPECIFIC__  defined __USE_GNU) || defined _LIBC
+/* Reserve storage for the data of a file associated with FD.  This function
+   is Linux-specific.  For the portable version, use posix_fallocate().
+   Unlike the latter, fallocate can operate in different modes.  The default
+   mode = 0 is equivalent to posix_fallocate().
+
+   Note: These declarations are used in posix_fallocate.c and
+   posix_fallocate64.c, so we expose them internally.
+ */
+
+/* Flags for fallocate's mode.  */
+# define FALLOC_FL_KEEP_SIZE1 /* Don't extend size of file
+ even if offset + len is
+ greater than file size.  */
+# define FALLOC_FL_PUNCH_HOLE   2 /* Create a hole in the file.  */
+
+# ifndef __USE_FILE_OFFSET64
+extern int fallocate (int __fd, int __mode, __off_t __offset, __off_t __len);
+# else
+#  ifdef __REDIRECT
+extern int __REDIRECT (fallocate, (int __fd, int __mode, __off64_t __offset,
+  __off64_t __len),
+  fallocate64);
+#  else
+#   define fallocate fallocate64
+#  endif
+# endif
+# ifdef __USE_LARGEFILE64
+extern int fallocate64 (int __fd, int __mode, __off64_t __offset, __off64_t 
__len);
+# endif
+#endif
+
 __END_DECLS
 
 #endif /* fcntl.h  */
diff --git a/libc/sysdeps/linux/common/Makefile.in 
b/libc/sysdeps/linux/common/Makefile.in
index e4ac4ff..412543f 100644
--- a/libc/sysdeps/linux/common/Makefile.in
+++ b/libc/sysdeps/linux/common/Makefile.in
@@ -62,6 +62,10 @@ CSRC-$(UCLIBC_LINUX_SPECIFIC) += \
vmsplice.c
 CSRC-$(if $(findstring yy,$(UCLIBC_LINUX_SPECIFIC)$(UCLIBC_HAS_LFS)),y) += \
sendfile64.c
+# posix_fallocate() needs __libc_fallocate() from fallocate.c
+# posix_fallocate64() needs __libc_fallocate64() from fallocate64.c
+CSRC-$(if $(UCLIBC_LINUX_SPECIFIC)$(UCLIBC_HAS_ADVANCED_REALTIME),y,) += \
+   fallocate.c $(filter fallocate64.c,$(CSRC-y))
 # NPTL needs these internally: madvise.c
 CSRC-$(findstring y,$(UCLIBC_LINUX_SPECIFIC)$(UCLIBC_HAS_THREADS_NATIVE)) += 
madvise.c
 ifeq ($(UCLIBC_HAS_THREADS_NATIVE),y)
diff 

[gentoo-commits] gentoo-x86 commit in net-p2p/bitcoin-qt: bitcoin-qt-0.8.6-r1.ebuild bitcoin-qt-0.9.3-r1.ebuild ChangeLog bitcoin-qt-0.8.6.ebuild bitcoin-qt-0.9.3.ebuild bitcoin-qt-0.9.2.1.ebuild

2015-01-10 Thread Anthony G. Basile (blueness)
blueness15/01/10 17:19:55

  Modified: ChangeLog
  Added:bitcoin-qt-0.8.6-r1.ebuild
bitcoin-qt-0.9.3-r1.ebuild
  Removed:  bitcoin-qt-0.8.6.ebuild bitcoin-qt-0.9.3.ebuild
bitcoin-qt-0.9.2.1.ebuild
  Log:
  Version bump for bug #536228
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0xF52D4BBA)

Revision  ChangesPath
1.90 net-p2p/bitcoin-qt/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoin-qt/ChangeLog?rev=1.90view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoin-qt/ChangeLog?rev=1.90content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoin-qt/ChangeLog?r1=1.89r2=1.90

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/net-p2p/bitcoin-qt/ChangeLog,v
retrieving revision 1.89
retrieving revision 1.90
diff -u -r1.89 -r1.90
--- ChangeLog   21 Nov 2014 23:44:07 -  1.89
+++ ChangeLog   10 Jan 2015 17:19:55 -  1.90
@@ -1,6 +1,16 @@
 # ChangeLog for net-p2p/bitcoin-qt
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/net-p2p/bitcoin-qt/ChangeLog,v 1.89 
2014/11/21 23:44:07 blueness Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/net-p2p/bitcoin-qt/ChangeLog,v 1.90 
2015/01/10 17:19:55 blueness Exp $
+
+*bitcoin-qt-0.8.6-r1 (10 Jan 2015)
+*bitcoin-qt-0.9.3-r1 (10 Jan 2015)
+
+  10 Jan 2015; Anthony G. Basile bluen...@gentoo.org
+  +bitcoin-qt-0.8.6-r1.ebuild, +bitcoin-qt-0.9.3-r1.ebuild,
+  +files/0.8-openssl-101k.patch, +files/0.9-openssl-101k.patch,
+  -bitcoin-qt-0.8.6.ebuild, -bitcoin-qt-0.9.2.1.ebuild,
+  -bitcoin-qt-0.9.3.ebuild:
+  Version bump for bug #536228
 
   21 Nov 2014; Anthony G. Basile bluen...@gentoo.org
   +files/-sys_libsecp256k1.patch, bitcoin-qt-.ebuild:



1.1  net-p2p/bitcoin-qt/bitcoin-qt-0.8.6-r1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoin-qt/bitcoin-qt-0.8.6-r1.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoin-qt/bitcoin-qt-0.8.6-r1.ebuild?rev=1.1content-type=text/plain

Index: bitcoin-qt-0.8.6-r1.ebuild
===
# Copyright 2010-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/net-p2p/bitcoin-qt/bitcoin-qt-0.8.6-r1.ebuild,v 1.1 
2015/01/10 17:19:55 blueness Exp $

EAPI=4

DB_VER=4.8

LANGS=af_ZA ar bg bs ca ca_ES cs cy da de el_GR en eo es es_CL et eu_ES fa 
fa_IR fi fr fr_CA gu_IN he hi_IN hr hu it ja la lt lv_LV nb nl pl pt_BR pt_PT 
ro_RO ru sk sr sv th_TH tr uk zh_CN zh_TW
inherit db-use eutils fdo-mime gnome2-utils kde4-functions qt4-r2 versionator

MyPV=${PV/_/}
MyPN=bitcoin
MyP=${MyPN}-${MyPV}

DESCRIPTION=An end-user Qt4 GUI for the Bitcoin crypto-currency
HOMEPAGE=http://bitcoin.org/;
SRC_URI=https://github.com/${MyPN}/${MyPN}/archive/v${MyPV}.tar.gz - 
${MyPN}-v${PV}.tgz
1stclassmsg? ( 
http://luke.dashjr.org/programs/bitcoin/files/bitcoind/luke-jr/1stclassmsg/0.8.2-1stclassmsg.patch.xz
 )


LICENSE=MIT ISC GPL-3 LGPL-2.1 public-domain || ( CC-BY-SA-3.0 LGPL-2.1 )
SLOT=0
KEYWORDS=~amd64 ~arm ~x86
IUSE=$IUSE 1stclassmsg dbus ipv6 kde +qrcode upnp

RDEPEND=
=dev-libs/boost-1.41.0[threads(+)]
dev-libs/openssl:0[-bindist]
qrcode? (
media-gfx/qrencode
)
upnp? (
net-libs/miniupnpc
)
sys-libs/db:$(db_ver_to_slot ${DB_VER})[cxx]
virtual/bitcoin-leveldb
dev-qt/qtgui:4
dbus? (
dev-qt/qtdbus:4
)

DEPEND=${RDEPEND}
=app-shells/bash-4.1


DOCS=doc/README.md doc/release-notes.md

S=${WORKDIR}/${MyP}

src_prepare() {
epatch ${FILESDIR}/0.8-openssl-101k.patch
use 1stclassmsg  epatch ${WORKDIR}/0.8.2-1stclassmsg.patch
epatch ${FILESDIR}/0.8.2-sys_leveldb.patch
rm -r src/leveldb

cd src || die

local filt= yeslang= nolang=

for lan in $LANGS; do
if [ ! -e qt/locale/bitcoin_$lan.ts ]; then
ewarn Language '$lan' no longer supported. Ebuild 
needs update.
fi
done

for ts in $(ls qt/locale/*.ts)
do
x=${ts/*bitcoin_/}
x=${x/.ts/}
if ! use linguas_$x; then
nolang=$nolang $x
rm $ts
filt=$filt\\|$x
else
yeslang=$yeslang $x
fi
done
filt=bitcoin_\\(${filt:2}\\)\\.\(qm\|ts\)
sed /${filt}/d -i 'qt/bitcoin.qrc'
einfo Languages -- 

[gentoo-commits] gentoo-x86 commit in media-sound/kwave: kwave-0.8.99.ebuild kwave-0.8.10.ebuild kwave-0.8.12.ebuild ChangeLog

2015-01-10 Thread Johannes Huber (johu)
johu15/01/10 10:52:08

  Modified: kwave-0.8.10.ebuild kwave-0.8.12.ebuild ChangeLog
  Added:kwave-0.8.99.ebuild
  Log:
  Version bump wrt #534214
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
F3CFD2BD)

Revision  ChangesPath
1.7  media-sound/kwave/kwave-0.8.10.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/kwave-0.8.10.ebuild?rev=1.7view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/kwave-0.8.10.ebuild?rev=1.7content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/kwave-0.8.10.ebuild?r1=1.6r2=1.7

Index: kwave-0.8.10.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/media-sound/kwave/kwave-0.8.10.ebuild,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- kwave-0.8.10.ebuild 31 Dec 2014 13:18:45 -  1.6
+++ kwave-0.8.10.ebuild 10 Jan 2015 10:52:08 -  1.7
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/media-sound/kwave/kwave-0.8.10.ebuild,v 1.6 
2014/12/31 13:18:45 kensington Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-sound/kwave/kwave-0.8.10.ebuild,v 1.7 
2015/01/10 10:52:08 johu Exp $
 
 EAPI=5
 



1.4  media-sound/kwave/kwave-0.8.12.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/kwave-0.8.12.ebuild?rev=1.4view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/kwave-0.8.12.ebuild?rev=1.4content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/kwave-0.8.12.ebuild?r1=1.3r2=1.4

Index: kwave-0.8.12.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/media-sound/kwave/kwave-0.8.12.ebuild,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -r1.3 -r1.4
--- kwave-0.8.12.ebuild 31 Dec 2014 13:18:45 -  1.3
+++ kwave-0.8.12.ebuild 10 Jan 2015 10:52:08 -  1.4
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/media-sound/kwave/kwave-0.8.12.ebuild,v 1.3 
2014/12/31 13:18:45 kensington Exp $
+# $Header: /var/cvsroot/gentoo-x86/media-sound/kwave/kwave-0.8.12.ebuild,v 1.4 
2015/01/10 10:52:08 johu Exp $
 
 EAPI=5
 



1.40 media-sound/kwave/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/ChangeLog?rev=1.40view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/ChangeLog?rev=1.40content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/ChangeLog?r1=1.39r2=1.40

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-sound/kwave/ChangeLog,v
retrieving revision 1.39
retrieving revision 1.40
diff -u -r1.39 -r1.40
--- ChangeLog   31 Dec 2014 13:18:45 -  1.39
+++ ChangeLog   10 Jan 2015 10:52:08 -  1.40
@@ -1,6 +1,12 @@
 # ChangeLog for media-sound/kwave
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-sound/kwave/ChangeLog,v 1.39 
2014/12/31 13:18:45 kensington Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-sound/kwave/ChangeLog,v 1.40 
2015/01/10 10:52:08 johu Exp $
+
+*kwave-0.8.99 (10 Jan 2015)
+
+  10 Jan 2015; Johannes Huber j...@gentoo.org +kwave-0.8.99.ebuild,
+  kwave-0.8.10.ebuild, kwave-0.8.12.ebuild:
+  Version bump wrt #534214
 
   31 Dec 2014; Michael Palimaka kensing...@gentoo.org kwave-0.8.10.ebuild,
   kwave-0.8.12.ebuild:



1.1  media-sound/kwave/kwave-0.8.99.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/kwave-0.8.99.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-sound/kwave/kwave-0.8.99.ebuild?rev=1.1content-type=text/plain

Index: kwave-0.8.99.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/media-sound/kwave/kwave-0.8.99.ebuild,v 1.1 
2015/01/10 10:52:08 johu Exp $

EAPI=5

KDE_LINGUAS=cs de es fr
KDE_HANDBOOK=optional
inherit kde4-base

DESCRIPTION=A sound editor for KDE that can edit many types of audio files
HOMEPAGE=http://kwave.sourceforge.net/;
SRC_URI=mirror://sourceforge/${PN}/${P}-2.tar.bz2

LICENSE=BSD GPL-2 LGPL-2
handbook? ( FDL-1.2 )
SLOT=4
KEYWORDS=~amd64 ~x86
IUSE=alsa debug flac mp3 opus 

[gentoo-commits] proj/sci:master commit in: /

2015-01-10 Thread Justin Lecher
commit: ced595b6dafab30a3203459d5aea111411ebc292
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 11:47:35 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 11:47:35 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=ced595b6

Merge remote-tracking branch 'github/master'

* github/master:
  Remove Mendeley-EULA (mendeleydesktop was moved to tree)


 licenses/Mendeley-EULA | 264 -
 1 file changed, 264 deletions(-)



[gentoo-commits] gentoo-x86 commit in dev-lang/xsb: ChangeLog xsb-3.5.0.ebuild

2015-01-10 Thread Keri Harris (keri)
keri15/01/10 14:18:46

  Modified: ChangeLog
  Added:xsb-3.5.0.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
A138F5ED)

Revision  ChangesPath
1.49 dev-lang/xsb/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lang/xsb/ChangeLog?rev=1.49view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lang/xsb/ChangeLog?rev=1.49content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lang/xsb/ChangeLog?r1=1.48r2=1.49

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-lang/xsb/ChangeLog,v
retrieving revision 1.48
retrieving revision 1.49
diff -u -r1.48 -r1.49
--- ChangeLog   9 Jan 2015 18:31:42 -   1.48
+++ ChangeLog   10 Jan 2015 14:18:46 -  1.49
@@ -1,6 +1,11 @@
 # ChangeLog for dev-lang/xsb
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-lang/xsb/ChangeLog,v 1.48 2015/01/09 
18:31:42 keri Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-lang/xsb/ChangeLog,v 1.49 2015/01/10 
14:18:46 keri Exp $
+
+*xsb-3.5.0 (10 Jan 2015)
+
+  10 Jan 2015; k...@gentoo.org +xsb-3.5.0.ebuild:
+  Version bump
 
   09 Jan 2015; k...@gentoo.org xsb-3.3.6.ebuild, xsb-3.3.7.ebuild:
   Do not compile xpath Prolog module without USE=curl



1.1  dev-lang/xsb/xsb-3.5.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lang/xsb/xsb-3.5.0.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-lang/xsb/xsb-3.5.0.ebuild?rev=1.1content-type=text/plain

Index: xsb-3.5.0.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/dev-lang/xsb/xsb-3.5.0.ebuild,v 1.1 
2015/01/10 14:18:46 keri Exp $

EAPI=2

MY_P=XSB${PV//./}

PATCHSET_VER=0

inherit eutils autotools java-pkg-opt-2

DESCRIPTION=XSB is a logic programming and deductive database system
HOMEPAGE=http://xsb.sourceforge.net;
SRC_URI=http://xsb.sourceforge.net/downloads/${MY_P}.tar.gz
mirror://gentoo/${P}-gentoo-patchset-${PATCHSET_VER}.tar.gz

LICENSE=GPL-2 LGPL-2
SLOT=0
KEYWORDS=~amd64 ~x86
IUSE=curl debug iodbc java mysql odbc pcre threads xml

RDEPEND=curl? ( net-misc/curl )
iodbc? ( dev-db/libiodbc )
java? ( =virtual/jdk-1.4 )
mysql? ( virtual/mysql )
odbc? ( dev-db/unixODBC )
pcre? ( dev-libs/libpcre )
xml? ( dev-libs/libxml2 )

DEPEND=${RDEPEND}

S=${WORKDIR}/XSB

src_prepare() {
EPATCH_FORCE=yes
EPATCH_SUFFIX=patch
epatch ${WORKDIR}/${PV}

cd ${S}/build
eautoconf

find ${S}/emu -name '*\.o' | xargs rm -f
find ${S} -name 'Installation_summary' | xargs rm -f
}

src_configure() {
cd ${S}/build

econf \
--prefix=/usr/$(get_libdir) \
--disable-optimization \
--without-smodels \
$(use_with odbc) \
$(use_with iodbc) \
$(use_enable threads mt) \
$(use_enable debug)

if use curl ; then
cd ${S}/packages/curl
econf
fi

if use mysql ; then
cd ${S}/packages/dbdrivers/mysql
econf
fi

if use odbc ; then
cd ${S}/packages/dbdrivers/odbc
econf
fi

if use pcre ; then
cd ${S}/packages/pcre
econf
fi

if use xml ; then
cd ${S}/packages/xpath
econf
fi
}

src_compile() {
cd ${S}/build

emake || die emake failed

# All XSB Packages are compiled using a single Prolog engine.
# Consequently they must all be compiled using a single make job.

cd ${S}/packages
rm -f *.xwam
emake -j1 || die emake packages failed

if use curl ; then
emake -j1 curl || die emake curl package failed
emake -j1 sgml || die emake sgml package failed
if use xml ; then
emake -j1 xpath || die emake xpath package failed
fi
fi

if use mysql ; then
emake -j1 mysql || die emake mysql package failed
fi

if use odbc ; then
emake -j1 odbc || die emake odbc package failed
fi

if use pcre ; then
emake -j1 pcre || die emake pcre package failed
fi
}

src_install() {
cd ${S}/build
emake DESTDIR=${D} install || die make install failed

local XSB_INSTALL_DIR=/usr/$(get_libdir)/xsb-${PV}
dosym ${XSB_INSTALL_DIR}/bin/xsb /usr/bin/xsb || die

cd 

[gentoo-commits] gentoo-x86 commit in gnome-extra/nm-applet: nm-applet-1.0.0.ebuild ChangeLog

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 14:54:29

  Modified: ChangeLog
  Added:nm-applet-1.0.0.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.125gnome-extra/nm-applet/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-extra/nm-applet/ChangeLog?rev=1.125view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-extra/nm-applet/ChangeLog?rev=1.125content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-extra/nm-applet/ChangeLog?r1=1.124r2=1.125

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/gnome-extra/nm-applet/ChangeLog,v
retrieving revision 1.124
retrieving revision 1.125
diff -u -r1.124 -r1.125
--- ChangeLog   19 Dec 2014 13:39:14 -  1.124
+++ ChangeLog   10 Jan 2015 14:54:29 -  1.125
@@ -1,6 +1,11 @@
 # ChangeLog for gnome-extra/nm-applet
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/gnome-extra/nm-applet/ChangeLog,v 1.124 
2014/12/19 13:39:14 pacho Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/gnome-extra/nm-applet/ChangeLog,v 1.125 
2015/01/10 14:54:29 pacho Exp $
+
+*nm-applet-1.0.0 (10 Jan 2015)
+
+  10 Jan 2015; Pacho Ramos pa...@gentoo.org +nm-applet-1.0.0.ebuild:
+  Version bump
 
   19 Dec 2014; Pacho Ramos pa...@gentoo.org nm-applet-0.9.10.0.ebuild:
   amd64 stable, bug 529964



1.1  gnome-extra/nm-applet/nm-applet-1.0.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-extra/nm-applet/nm-applet-1.0.0.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/gnome-extra/nm-applet/nm-applet-1.0.0.ebuild?rev=1.1content-type=text/plain

Index: nm-applet-1.0.0.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/gnome-extra/nm-applet/nm-applet-1.0.0.ebuild,v 1.1 
2015/01/10 14:54:29 pacho Exp $

EAPI=5
GCONF_DEBUG=no
GNOME2_LA_PUNT=yes
GNOME_ORG_MODULE=network-manager-applet

inherit gnome2

DESCRIPTION=GNOME applet for NetworkManager
HOMEPAGE=https://wiki.gnome.org/Projects/NetworkManager;

LICENSE=GPL-2+
SLOT=0
IUSE=bluetooth +introspection modemmanager
KEYWORDS=~alpha ~amd64 ~arm ~sparc ~x86

RDEPEND=
app-crypt/libsecret
=dev-libs/glib-2.32:2
=dev-libs/dbus-glib-0.88
=sys-apps/dbus-1.4.1
=sys-auth/polkit-0.96-r1
=x11-libs/gtk+-3.4:3[introspection?]
=x11-libs/libnotify-0.7.0

app-text/iso-codes
=net-misc/networkmanager-1.0.0[introspection?]
net-misc/mobile-broadband-provider-info

bluetooth? ( =net-wireless/gnome-bluetooth-2.27.6:= )
introspection? ( =dev-libs/gobject-introspection-0.9.6 )
modemmanager? ( =net-misc/modemmanager-0.7.990 )
virtual/freedesktop-icon-theme
virtual/notification-daemon
virtual/libgudev:=

DEPEND=${RDEPEND}
virtual/pkgconfig
=dev-util/intltool-0.40


src_configure() {
gnome2_src_configure \
--disable-more-warnings \
--disable-static \
--disable-migration \
--localstatedir=/var \
$(use_with bluetooth) \
$(use_enable introspection) \
$(use_with modemmanager modem-manager-1)
}






[gentoo-commits] gentoo-x86 commit in net-misc/networkmanager-openswan: networkmanager-openswan-1.0.0.ebuild ChangeLog networkmanager-openswan-0.9.8.4.ebuild

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 15:14:49

  Modified: ChangeLog
  Added:networkmanager-openswan-1.0.0.ebuild
  Removed:  networkmanager-openswan-0.9.8.4.ebuild
  Log:
  Version bump, drop old
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.28 net-misc/networkmanager-openswan/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openswan/ChangeLog?rev=1.28view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openswan/ChangeLog?rev=1.28content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openswan/ChangeLog?r1=1.27r2=1.28

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/net-misc/networkmanager-openswan/ChangeLog,v
retrieving revision 1.27
retrieving revision 1.28
diff -u -r1.27 -r1.28
--- ChangeLog   19 Dec 2014 13:42:40 -  1.27
+++ ChangeLog   10 Jan 2015 15:14:49 -  1.28
@@ -1,6 +1,13 @@
 # ChangeLog for net-misc/networkmanager-openswan
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager-openswan/ChangeLog,v 1.27 
2014/12/19 13:42:40 pacho Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager-openswan/ChangeLog,v 1.28 
2015/01/10 15:14:49 pacho Exp $
+
+*networkmanager-openswan-1.0.0 (10 Jan 2015)
+
+  10 Jan 2015; Pacho Ramos pa...@gentoo.org
+  +networkmanager-openswan-1.0.0.ebuild,
+  -networkmanager-openswan-0.9.8.4.ebuild:
+  Version bump, drop old
 
   19 Dec 2014; Pacho Ramos pa...@gentoo.org
   networkmanager-openswan-0.9.8.4-r1.ebuild:



1.1  
net-misc/networkmanager-openswan/networkmanager-openswan-1.0.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openswan/networkmanager-openswan-1.0.0.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openswan/networkmanager-openswan-1.0.0.ebuild?rev=1.1content-type=text/plain

Index: networkmanager-openswan-1.0.0.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager-openswan/networkmanager-openswan-1.0.0.ebuild,v
 1.1 2015/01/10 15:14:49 pacho Exp $

EAPI=5
GCONF_DEBUG=no
GNOME_ORG_MODULE=NetworkManager-${PN##*-}

inherit gnome2

DESCRIPTION=NetworkManager Openswan plugin
HOMEPAGE=https://wiki.gnome.org/Projects/NetworkManager;

LICENSE=GPL-2+
SLOT=0
KEYWORDS=~amd64 ~x86
IUSE=gtk

RDEPEND=
=dev-libs/glib-2.32:2
=dev-libs/libnl-3.2.8:3
=net-misc/networkmanager-0.9.10:=
=dev-libs/dbus-glib-0.74
|| ( net-misc/openswan net-misc/libreswan )
gtk? (
app-crypt/libsecret
=x11-libs/gtk+-3.4:3
)

DEPEND=${RDEPEND}
sys-devel/gettext
dev-util/intltool
virtual/pkgconfig


src_configure() {
gnome2_src_configure \
--disable-more-warnings \
--disable-static \
--with-dist-version=Gentoo \
$(use_with gtk gnome)
}






[gentoo-commits] gentoo-x86 commit in net-misc/networkmanager-pptp: networkmanager-pptp-1.0.0.ebuild ChangeLog

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 15:27:37

  Modified: ChangeLog
  Added:networkmanager-pptp-1.0.0.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.44 net-misc/networkmanager-pptp/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-pptp/ChangeLog?rev=1.44view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-pptp/ChangeLog?rev=1.44content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-pptp/ChangeLog?r1=1.43r2=1.44

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/net-misc/networkmanager-pptp/ChangeLog,v
retrieving revision 1.43
retrieving revision 1.44
diff -u -r1.43 -r1.44
--- ChangeLog   19 Dec 2014 13:42:52 -  1.43
+++ ChangeLog   10 Jan 2015 15:27:36 -  1.44
@@ -1,6 +1,11 @@
 # ChangeLog for net-misc/networkmanager-pptp
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/net-misc/networkmanager-pptp/ChangeLog,v 
1.43 2014/12/19 13:42:52 pacho Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/net-misc/networkmanager-pptp/ChangeLog,v 
1.44 2015/01/10 15:27:36 pacho Exp $
+
+*networkmanager-pptp-1.0.0 (10 Jan 2015)
+
+  10 Jan 2015; Pacho Ramos pa...@gentoo.org 
+networkmanager-pptp-1.0.0.ebuild:
+  Version bump
 
   19 Dec 2014; Pacho Ramos pa...@gentoo.org
   networkmanager-pptp-0.9.10.0.ebuild:



1.1  
net-misc/networkmanager-pptp/networkmanager-pptp-1.0.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-pptp/networkmanager-pptp-1.0.0.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-pptp/networkmanager-pptp-1.0.0.ebuild?rev=1.1content-type=text/plain

Index: networkmanager-pptp-1.0.0.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager-pptp/networkmanager-pptp-1.0.0.ebuild,v
 1.1 2015/01/10 15:27:36 pacho Exp $

EAPI=5
GCONF_DEBUG=no
GNOME_ORG_MODULE=NetworkManager-${PN##*-}

inherit gnome2

DESCRIPTION=NetworkManager PPTP plugin
HOMEPAGE=https://wiki.gnome.org/Projects/NetworkManager;

LICENSE=GPL-2+
SLOT=0
KEYWORDS=~amd64 ~arm ~x86
IUSE=gtk

RDEPEND=
=net-misc/networkmanager-0.9.10:=
=dev-libs/dbus-glib-0.74
=dev-libs/glib-2.32:2
net-dialup/ppp:=
net-dialup/pptpclient
gtk? (
app-crypt/libsecret
=gnome-extra/nm-applet-0.9.9.0
=x11-libs/gtk+-3.4:3
)

DEPEND=${RDEPEND}
sys-devel/gettext
dev-util/intltool
virtual/pkgconfig


src_configure() {
local myconf
# Same hack as net-dialup/pptpd to get proper plugin dir for ppp, bug 
#519986
local PPPD_VER=`best_version net-dialup/ppp`
PPPD_VER=${PPPD_VER#*/*-} #reduce it to ${PV}-${PR}
PPPD_VER=${PPPD_VER%%[_-]*} # main version without 
beta/pre/patch/revision
myconf=${myconf} 
--with-pppd-plugin-dir=/usr/$(get_libdir)/pppd/${PPPD_VER}

gnome2_src_configure \
--disable-more-warnings \
--disable-static \
--with-dist-version=Gentoo \
$(use_with gtk gnome) \
${myconf}
}






[gentoo-commits] gentoo-x86 commit in net-p2p/bitcoind: bitcoind-0.8.6-r2.ebuild bitcoind-0.9.3-r1.ebuild ChangeLog bitcoind-0.9.2.1.ebuild bitcoind-0.8.6-r1.ebuild bitcoind-0.9.3.ebuild

2015-01-10 Thread Anthony G. Basile (blueness)
blueness15/01/10 17:02:08

  Modified: ChangeLog
  Added:bitcoind-0.8.6-r2.ebuild bitcoind-0.9.3-r1.ebuild
  Removed:  bitcoind-0.9.2.1.ebuild bitcoind-0.8.6-r1.ebuild
bitcoind-0.9.3.ebuild
  Log:
  Version bump for bug #536228
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0xF52D4BBA)

Revision  ChangesPath
1.94 net-p2p/bitcoind/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoind/ChangeLog?rev=1.94view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoind/ChangeLog?rev=1.94content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoind/ChangeLog?r1=1.93r2=1.94

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/net-p2p/bitcoind/ChangeLog,v
retrieving revision 1.93
retrieving revision 1.94
diff -u -r1.93 -r1.94
--- ChangeLog   21 Nov 2014 12:14:47 -  1.93
+++ ChangeLog   10 Jan 2015 17:02:08 -  1.94
@@ -1,6 +1,15 @@
 # ChangeLog for net-p2p/bitcoind
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/net-p2p/bitcoind/ChangeLog,v 1.93 
2014/11/21 12:14:47 blueness Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/net-p2p/bitcoind/ChangeLog,v 1.94 
2015/01/10 17:02:08 blueness Exp $
+
+*bitcoind-0.8.6-r2 (10 Jan 2015)
+*bitcoind-0.9.3-r1 (10 Jan 2015)
+
+  10 Jan 2015; Anthony G. Basile bluen...@gentoo.org
+  +bitcoind-0.8.6-r2.ebuild, +bitcoind-0.9.3-r1.ebuild,
+  +files/0.8-openssl-101k.patch, +files/0.9-openssl-101k.patch,
+  -bitcoind-0.8.6-r1.ebuild, -bitcoind-0.9.2.1.ebuild, -bitcoind-0.9.3.ebuild:
+  Version bump for bug #536228
 
   21 Nov 2014; Anthony G. Basile bluen...@gentoo.org
   +files/-sys_libsecp256k1.patch, bitcoind-.ebuild:



1.1  net-p2p/bitcoind/bitcoind-0.8.6-r2.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoind/bitcoind-0.8.6-r2.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoind/bitcoind-0.8.6-r2.ebuild?rev=1.1content-type=text/plain

Index: bitcoind-0.8.6-r2.ebuild
===
# Copyright 2010-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/net-p2p/bitcoind/bitcoind-0.8.6-r2.ebuild,v 
1.1 2015/01/10 17:02:08 blueness Exp $

EAPI=4

DB_VER=4.8

inherit bash-completion-r1 db-use eutils versionator systemd toolchain-funcs 
user

MyPV=${PV/_/}
MyPN=bitcoin
MyP=${MyPN}-${MyPV}

DESCRIPTION=Original Bitcoin crypto-currency wallet for automated services
HOMEPAGE=http://bitcoin.org/;
SRC_URI=https://github.com/${MyPN}/${MyPN}/archive/v${MyPV}.tar.gz - 
${MyPN}-v${PV}.tgz


LICENSE=MIT ISC GPL-2
SLOT=0
KEYWORDS=~amd64 ~arm ~x86
IUSE=examples ipv6 logrotate upnp

RDEPEND=
=dev-libs/boost-1.41.0[threads(+)]
dev-libs/openssl:0[-bindist]
logrotate? (
app-admin/logrotate
)
upnp? (
net-libs/miniupnpc
)
sys-libs/db:$(db_ver_to_slot ${DB_VER})[cxx]
virtual/bitcoin-leveldb

DEPEND=${RDEPEND}
=app-shells/bash-4.1
sys-apps/sed


S=${WORKDIR}/${MyP}

pkg_setup() {
local UG='bitcoin'
enewgroup ${UG}
enewuser ${UG} -1 -1 /var/lib/bitcoin ${UG}
}

src_prepare() {
epatch ${FILESDIR}/0.8-openssl-101k.patch
epatch ${FILESDIR}/0.8.2-sys_leveldb.patch
rm -r src/leveldb

if has_version '=dev-libs/boost-1.52'; then
sed -i 's/\(-l db_cxx\)/-l boost_chrono$(BOOST_LIB_SUFFIX) \1/' 
src/makefile.unix
fi
}

src_compile() {
OPTS=()

OPTS+=(DEBUGFLAGS=)
OPTS+=(CXXFLAGS=${CXXFLAGS})
OPTS+=(LDFLAGS=${LDFLAGS})

OPTS+=(BDB_INCLUDE_PATH=$(db_includedir ${DB_VER}))
OPTS+=(BDB_LIB_SUFFIX=-${DB_VER})

if use upnp; then
OPTS+=(USE_UPNP=1)
else
OPTS+=(USE_UPNP=)
fi
use ipv6 || OPTS+=(USE_IPV6=-)

OPTS+=(USE_SYSTEM_LEVELDB=1)

cd src || die
emake CC=$(tc-getCC) CXX=$(tc-getCXX) -f makefile.unix ${OPTS[@]} 
${PN}
}

src_test() {
cd src || die
emake CC=$(tc-getCC) CXX=$(tc-getCXX) -f makefile.unix ${OPTS[@]} 
test_bitcoin
./test_bitcoin || die 'Tests failed'
}

src_install() {
dobin src/${PN}

insinto /etc/bitcoin
newins ${FILESDIR}/bitcoin.conf bitcoin.conf
fowners bitcoin:bitcoin /etc/bitcoin/bitcoin.conf
fperms 600 /etc/bitcoin/bitcoin.conf

newconfd ${FILESDIR}/bitcoin.confd ${PN}
newinitd ${FILESDIR}/bitcoin.initd-r1 ${PN}
systemd_dounit ${FILESDIR}/bitcoind.service


[gentoo-commits] gentoo-x86 commit in net-p2p/bitcoind/files: 0.8-openssl-101k.patch 0.9-openssl-101k.patch

2015-01-10 Thread Anthony G. Basile (blueness)
blueness15/01/10 17:02:08

  Added:0.8-openssl-101k.patch 0.9-openssl-101k.patch
  Log:
  Version bump for bug #536228
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0xF52D4BBA)

Revision  ChangesPath
1.1  net-p2p/bitcoind/files/0.8-openssl-101k.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoind/files/0.8-openssl-101k.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoind/files/0.8-openssl-101k.patch?rev=1.1content-type=text/plain

Index: 0.8-openssl-101k.patch
===
diff --git a/src/key.cpp b/src/key.cpp
index 75114c6..7fcb17d 100644
--- a/src/key.cpp
+++ b/src/key.cpp
@@ -376,11 +376,23 @@ bool CKey::SetCompactSignature(uint256 hash, const 
std::vectorunsigned char v
 
 bool CKey::Verify(uint256 hash, const std::vectorunsigned char vchSig)
 {
-// -1 = error, 0 = bad sig, 1 = good
-if (ECDSA_verify(0, (unsigned char*)hash, sizeof(hash), vchSig[0], 
vchSig.size(), pkey) != 1)
+if (vchSig.empty())
 return false;
 
-return true;
+// New versions of OpenSSL will reject non-canonical DER signatures. 
de/re-serialize first.
+unsigned char *norm_der = NULL;
+ECDSA_SIG *norm_sig = ECDSA_SIG_new();
+const unsigned char* sigptr = vchSig[0];
+d2i_ECDSA_SIG(norm_sig, sigptr, vchSig.size());
+int derlen = i2d_ECDSA_SIG(norm_sig, norm_der);
+ECDSA_SIG_free(norm_sig);
+if (derlen = 0)
+return false;
+
+// -1 = error, 0 = bad sig, 1 = good
+bool ret = ECDSA_verify(0, (unsigned char*)hash, sizeof(hash), norm_der, 
derlen, pkey) == 1;
+OPENSSL_free(norm_der);
+return ret;
 }
 
 bool CKey::VerifyCompact(uint256 hash, const std::vectorunsigned char 
vchSig)



1.1  net-p2p/bitcoind/files/0.9-openssl-101k.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoind/files/0.9-openssl-101k.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoind/files/0.9-openssl-101k.patch?rev=1.1content-type=text/plain

Index: 0.9-openssl-101k.patch
===
diff --git a/src/key.cpp b/src/key.cpp
index 5b261bb..a845ba1 100644
--- a/src/key.cpp
+++ b/src/key.cpp
@@ -227,10 +227,23 @@ public:
 }
 
 bool Verify(const uint256 hash, const std::vectorunsigned char vchSig) 
{
-// -1 = error, 0 = bad sig, 1 = good
-if (ECDSA_verify(0, (unsigned char*)hash, sizeof(hash), vchSig[0], 
vchSig.size(), pkey) != 1)
+if (vchSig.empty())
 return false;
-return true;
+
+// New versions of OpenSSL will reject non-canonical DER signatures. 
de/re-serialize first.
+unsigned char *norm_der = NULL;
+ECDSA_SIG *norm_sig = ECDSA_SIG_new();
+const unsigned char* sigptr = vchSig[0];
+d2i_ECDSA_SIG(norm_sig, sigptr, vchSig.size());
+int derlen = i2d_ECDSA_SIG(norm_sig, norm_der);
+ECDSA_SIG_free(norm_sig);
+if (derlen = 0)
+return false;
+
+// -1 = error, 0 = bad sig, 1 = good
+bool ret = ECDSA_verify(0, (unsigned char*)hash, sizeof(hash), 
norm_der, derlen, pkey) == 1;
+OPENSSL_free(norm_der);
+return ret;
 }
 
 bool SignCompact(const uint256 hash, unsigned char *p64, int rec) {






[gentoo-commits] proj/sci:master commit in: /

2015-01-10 Thread Justin Lecher
commit: 5352745ea0b8baeaf7686a3243ab4a2860193ba3
Author: Justin jlec AT gentoo DOT org
AuthorDate: Fri Jan  9 12:25:49 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Fri Jan  9 12:25:49 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5352745e

Merge pull request #311 from marbre/master

Remove Mendeley-EULA (mendeleydesktop was moved to tree)


 licenses/Mendeley-EULA | 264 -
 1 file changed, 264 deletions(-)



[gentoo-commits] proj/sci:master commit in: licenses/

2015-01-10 Thread Justin Lecher
commit: d9d17ad1c57f74022eae6ec679e0afeac044a89e
Author: Marius Brehler marbre AT linux DOT sungazer DOT de
AuthorDate: Fri Jan  9 11:59:47 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Fri Jan  9 11:59:47 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=d9d17ad1

Remove Mendeley-EULA (mendeleydesktop was moved to tree)

---
 licenses/Mendeley-EULA | 264 -
 1 file changed, 264 deletions(-)

diff --git a/licenses/Mendeley-EULA b/licenses/Mendeley-EULA
deleted file mode 100644
index a3c5fd7..000
--- a/licenses/Mendeley-EULA
+++ /dev/null
@@ -1,264 +0,0 @@
-TERMS OF USE
-
-This page (together with the documents referred to on it) tells you the terms 
on which you may make use of our website www.mendeley.com (our Site) and our 
software (our Software), whether as a user or a registered member. Please 
read these Terms of Use carefully before you start to use the Site and the 
Software. By using our Site and our Software, you indicate that you accept 
these Terms of Use and that you agree to abide by them. If you do not agree to 
these Terms of Use, please refrain from using our Site and our Software.
-
-
-1. INFORMATION ABOUT US
-
-1.1. www.mendeley.com is a site operated by Mendeley Limited (we, us and 
our). We are registered in England and Wales under company number 6419015 and 
have our registered office at Second Floor, Cardiff House, Tilling Road, London 
NW2 1LJ. Our VAT number is 930 1117 75.
-
-2. PURPOSE
-
-2.1. The principal purposes of the Site are to:
-
-2.1.1. assist you in the cataloguing and managing of your academic 
papers and articles (Academic Papers);
-
-2.1.2. share your academic and scientific knowledge with selected 
colleagues;
-
-2.1.3. discover academic knowledge and enable detailed search of 
academic papers;
-
-2.1.4. put you in touch with like-minded people and facilitate 
research projects.
-
-3. ACCESSING OUR SITE
-
-3.1. Although we aim to keep the Site available at all reasonable times, we 
may withdraw, suspend or amend the service we provide on our Site without 
notice including, for example, in the event of technical failures, upgrades, 
routine or emergency repair work or some reason outside our control. We will 
not be liable if for any reason our Site is unavailable at any time or for any 
period.
-
-3.2. We restrict access to certain parts of our Site to users who have 
registered with us. If you register with us, you must provide true and accurate 
information about yourself. Should the registration information provided prove 
false or misleading (including your personal details), we may suspend or 
terminate your account.
-
-3.3. If you choose a password or any other piece of information as part of our 
security procedures, you must treat such information as confidential, and you 
must not disclose it to any third party. We have the right to disable any 
account or password, if in our reasonable opinion, your account information has 
been compromised. You must tell us immediately if you suspect any unauthorised 
use of your account or access to your password. You are solely responsible for 
any and all use of your account.
-
-
-4. OUR SOFTWARE - EULA
-
-4.1. We allow you to download our proprietary software (including any updates 
to the software that we may make available from time to time) from the Site 
(our Software) or obtain the Software from our users for the purposes of 
cataloguing and managing your Academic Papers.
-
-4.2. By proceeding to download and install our Software (or any updates to the 
Software that we may make available from time to time), you agree to the terms 
of this EULA and these Terms of Use and your use of such Software (including 
any updates) will be in accordance with this EULA and these Terms of Use. If 
you do not agree to these, we are unwilling to license our Software to you. In 
this case, you may not download or install our Software and you must 
discontinue the downloading or installation process.
-
-4.3. If you choose to download and install our Software and connect it to a 
Mendeley Web account by entering your account details, our Software collects 
(even while you are offline) certain data which is uploaded to our servers when 
you synchronize your Software and Mendeley Web account. We collect data 
relating to your:
-
-4.3.1. Academic Papers such as the author name, title and keywords for 
the purpose of assisting in the:
- * cataloguing of your and other user's Academic Papers;
- * indexing of academic articles and materials;
- * searching of the indexed academic articles and materials;
- * improving the document recognition process for all users;
-
-4.3.2. reading, cataloguing and accessing your Academic Papers for the 
purpose of:
- * generating recommendations for you including articles that you may be 
interested in reading and these recommendations are 

[gentoo-commits] proj/sci:master commit in: sci-biology/zmsort/

2015-01-10 Thread Justin Lecher
commit: 7e1cb44487853aee7343f6b757ed6aa5b2e2d53b
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 12:53:21 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 12:53:21 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7e1cb444

sci-biology/zmsort: Bump EAPI

Package-Manager: portage-2.2.15

---
 sci-biology/zmsort/ChangeLog|  6 +-
 sci-biology/zmsort/metadata.xml | 10 +-
 sci-biology/zmsort/zmsort-110625.ebuild |  4 ++--
 3 files changed, 12 insertions(+), 8 deletions(-)

diff --git a/sci-biology/zmsort/ChangeLog b/sci-biology/zmsort/ChangeLog
index 7e45e0a..d309ac6 100644
--- a/sci-biology/zmsort/ChangeLog
+++ b/sci-biology/zmsort/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/zmsort
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org zmsort-110625.ebuild,
+  metadata.xml:
+  Bump EAPI
+
 *zmsort-110625 (25 Jun 2011)
 
   25 Jun 2011; Justin Lecher j...@gentoo.org -zmsort-0.1.ebuild,

diff --git a/sci-biology/zmsort/metadata.xml b/sci-biology/zmsort/metadata.xml
index 07b5255..2bc8930 100644
--- a/sci-biology/zmsort/metadata.xml
+++ b/sci-biology/zmsort/metadata.xml
@@ -1,9 +1,9 @@
 ?xml version=1.0 encoding=UTF-8?
 !DOCTYPE pkgmetadata SYSTEM http://www.gentoo.org/dtd/metadata.dtd;
 pkgmetadata
-   herdsci-biology/herd
-   maintainer
-   emailmmokr...@fold.natur.cuni.cz/email
-   nameMartin Mokrejs/name
-   /maintainer
+  herdsci-biology/herd
+  maintainer
+emailmmokr...@fold.natur.cuni.cz/email
+nameMartin Mokrejs/name
+  /maintainer
 /pkgmetadata

diff --git a/sci-biology/zmsort/zmsort-110625.ebuild 
b/sci-biology/zmsort/zmsort-110625.ebuild
index facb475..bf79612 100644
--- a/sci-biology/zmsort/zmsort-110625.ebuild
+++ b/sci-biology/zmsort/zmsort-110625.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=4
+EAPI=5
 
 inherit eutils toolchain-funcs
 



[gentoo-commits] proj/sci:master commit in: sci-biology/tigr-closure/

2015-01-10 Thread Justin Lecher
commit: cd6e016859ba3b052f662bfc482ebdac830c38a9
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 12:41:42 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 12:41:42 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=cd6e0168

sci-biology/tigr-closure: Some QA, add license

Package-Manager: portage-2.2.15

---
 sci-biology/tigr-closure/ChangeLog |  3 ++
 .../tigr-closure/tigr-closure-20080106.ebuild  | 47 ++
 2 files changed, 25 insertions(+), 25 deletions(-)

diff --git a/sci-biology/tigr-closure/ChangeLog 
b/sci-biology/tigr-closure/ChangeLog
index eba3b60..a4bebc8 100644
--- a/sci-biology/tigr-closure/ChangeLog
+++ b/sci-biology/tigr-closure/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org tigr-closure-20080106.ebuild:
+  Some QA, add license
+
 *tigr-closure-20080106 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz

diff --git a/sci-biology/tigr-closure/tigr-closure-20080106.ebuild 
b/sci-biology/tigr-closure/tigr-closure-20080106.ebuild
index 068dde9..f06be63 100644
--- a/sci-biology/tigr-closure/tigr-closure-20080106.ebuild
+++ b/sci-biology/tigr-closure/tigr-closure-20080106.ebuild
@@ -11,7 +11,7 @@ HOMEPAGE=http://tigr-closure.sourceforge.net/;
 # http://tigr-closure.svn.sourceforge.net/tigr-closure/
 SRC_URI=tigr-closure-svn-20080106.tar.gz
 
-LICENSE=
+LICENSE=all-rights-reserved
 SLOT=0
 KEYWORDS=
 IUSE=
@@ -20,48 +20,45 @@ DEPEND=dev-lang/perl
 RDEPEND=
 
 src_compile() {
-   cd TIGR
-   # install the two *.pm files into our perl path?
-   cd ..
 
# Closure Work Order Processing (CWP - CLOVER)
# clover and oats
-   cd ${WORKDIR}/CWPSystem/trunk/
+   cd ${WORKDIR}/CWPSystem/trunk/ || die
# needs TIGR/EUIDService.pm in PERL paths
-   make dist
+   emake dist
# how to install the files from install/ ?
-   cd ../..
-   
-   # 
-   cd ScaffoldMgmt/trunk
-   make dist
+   cd ../.. || die
+
+   #
+   cd ScaffoldMgmt/trunk || die
+   emake dist
# FIXME: unpack the .tar file into image during src_install()
-   cd ../..
+   cd ../.. || die
 
# awfull
-   cd ClosureQC/trunk/
-   mkdir sandbox
-   ${SANDBOX}=${WORKDIR}/sandbox
+   cd ClosureQC/trunk/ || die
+   mkdir sandbox || die
+   ${SANDBOX}=${WORKDIR}/sandbox
# have ./src/, ./doc, ./install, ./test/work/drivers, 
./test/work/getqc, ./test/tmp
-   cd test
+   cd test || die
# ...
-   cd ../../..
+   cd ../../.. || die
 
-   # 
-   cd ClosureReactionSystem/trunk
-   make BUILD=true
-   cd ../..
+   #
+   cd ClosureReactionSystem/trunk || die
+   emake BUILD=true
+   cd ../.. || die
 
# some Java servlet?
-   cd AserverConsoleEJB3Hibernate
+   cd AserverConsoleEJB3Hibernate || die
# huh?
-   cd ../..
+   cd ../.. || die
 }
 
 src_install() {
-   cd ${WORKDIR}/SequenceTiling
+   cd ${WORKDIR}/SequenceTiling || die
dobin trunk/src/*.pl
-   cd trunk/src/TIGR/SequenceTiling/
+   cd trunk/src/TIGR/SequenceTiling/ || die
myinst=DESTDIR=${D}
perl-module_src_install
#



[gentoo-commits] proj/sci:master commit in: sci-biology/BRANCH/

2015-01-10 Thread Justin Lecher
commit: e9a2b3ddeae5c85652ba3c6758a00a7f22d9203c
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 13:29:21 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 13:29:21 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e9a2b3dd

sci-biology/BRANCH: Move from git-2 to git-r3 eclass; add HOMEPAGE; be verbose 
during compilation; install docs

Package-Manager: portage-2.2.15

---
 sci-biology/BRANCH/BRANCH-.ebuild | 15 ---
 sci-biology/BRANCH/ChangeLog  |  4 
 2 files changed, 12 insertions(+), 7 deletions(-)

diff --git a/sci-biology/BRANCH/BRANCH-.ebuild 
b/sci-biology/BRANCH/BRANCH-.ebuild
index 74be1b1..923f5b4 100644
--- a/sci-biology/BRANCH/BRANCH-.ebuild
+++ b/sci-biology/BRANCH/BRANCH-.ebuild
@@ -4,12 +4,12 @@
 
 EAPI=5
 
-[ $PV ==  ]  inherit git-2
+[ $PV ==  ]  inherit git-r3
 
-inherit eutils
+inherit eutils toolchain-funcs
 
 DESCRIPTION=Extend partial transcripts with sequence from other reads or 
genomic contigs
-HOMEPAGE=
+HOMEPAGE=https://github.com/baoe/BRANCH;
 if [ $PV ==  ]; then
EGIT_REPO_URI=https://github.com/baoe/BRANCH;
KEYWORDS=
@@ -18,20 +18,21 @@ else
KEYWORDS=
 fi
 
-
 LICENSE=Artistic-2
 SLOT=0
 IUSE=
 
-DEPEND=sci-biology/blat
+DEPEND=
+   sci-biology/blat
sci-libs/lemon
 RDEPEND=${DEPEND}
 
 src_compile(){
-   cd BRANCH || die
-   g++ -o BRANCH BRANCH.cpp -lemon -lpthread || die
+   einfo $(tc-getCXX) ${CXXFLAGS} ${LDFLAGS} -o BRANCH BRANCH.cpp -lemon 
-lpthread
+   $(tc-getCXX) ${CXXFLAGS} ${LDFLAGS} -o BRANCH/BRANCH BRANCH/BRANCH.cpp 
-lemon -lpthread || die
 }
 
 src_install(){
dobin BRANCH/BRANCH
+   dodoc README.md
 }

diff --git a/sci-biology/BRANCH/ChangeLog b/sci-biology/BRANCH/ChangeLog
index 8954ba6..03ab1fc 100644
--- a/sci-biology/BRANCH/ChangeLog
+++ b/sci-biology/BRANCH/ChangeLog
@@ -2,6 +2,10 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org BRANCH-.ebuild:
+  Move from git-2 to git-r3 eclass; add HOMEPAGE; be verbose during
+  compilation; install docs
+
 *BRANCH- (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz



[gentoo-commits] proj/sci:master commit in: eclass/

2015-01-10 Thread Justin Lecher
commit: 37e01e338079815fb54428f8739c54411dd243ac
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 13:13:26 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 13:13:26 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=37e01e33

Update dev-db/postgresql-base to dev-db/postgresql

Signed-off-by: Justin Lecher jlec AT gentoo.org

---
 eclass/emboss.eclass | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/eclass/emboss.eclass b/eclass/emboss.eclass
index f8aab54..aff93df 100644
--- a/eclass/emboss.eclass
+++ b/eclass/emboss.eclass
@@ -68,7 +68,7 @@ DEPEND=
mysql? ( dev-db/mysql )
pdf? ( media-libs/libharu )
png? ( media-libs/gd[png] )
-   postgres? ( dev-db/postgresql-base )
+   postgres? ( dev-db/postgresql )
X? ( x11-libs/libXt )
 RDEPEND=${DEPEND}
 



[gentoo-commits] proj/sci:master commit in: sci-biology/blue/

2015-01-10 Thread Justin Lecher
commit: 3f6a27b07fb75fe134e05e7487f301f02fbb77a6
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 13:38:06 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 13:38:06 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3f6a27b0

sci-biology/blue: Fix license

Package-Manager: portage-2.2.15

---
 sci-biology/blue/ChangeLog | 3 +++
 sci-biology/blue/blue-1.1.2.ebuild | 5 +++--
 2 files changed, 6 insertions(+), 2 deletions(-)

diff --git a/sci-biology/blue/ChangeLog b/sci-biology/blue/ChangeLog
index 7c74563..9dcc134 100644
--- a/sci-biology/blue/ChangeLog
+++ b/sci-biology/blue/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org blue-1.1.2.ebuild:
+  Fix license
+
 *blue-1.1.2 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz +blue-1.1.2.ebuild,

diff --git a/sci-biology/blue/blue-1.1.2.ebuild 
b/sci-biology/blue/blue-1.1.2.ebuild
index a4555b3..834db7c 100644
--- a/sci-biology/blue/blue-1.1.2.ebuild
+++ b/sci-biology/blue/blue-1.1.2.ebuild
@@ -6,10 +6,11 @@ EAPI=5
 
 DESCRIPTION=Error corrector for Illummina and Roche/454 able to also fix 
insertions and deletions
 HOMEPAGE=http://www.csiro.au/Outcomes/ICT-and-Services/Software/Blue.aspx;
-SRC_URI=http://www.csiro.au/~/media/CSIROau/Images/Bioinformatics/Blue_software/Version_1-1-2/Linux112.ashx
 - ${P}.tar.gz
+SRC_URI=
+   
http://www.csiro.au/~/media/CSIROau/Images/Bioinformatics/Blue_software/Version_1-1-2/Linux112.ashx
 - ${P}.tar.gz

http://www.csiro.au/~/media/CSIROau/Images/Bioinformatics/Blue_software/Version_1-1-2/Correcting_reads_with_Blue.ashx
 - Correcting_reads_with_Blue.pdf
 
-LICENSE=GPL
+LICENSE=GPL-2+
 SLOT=0
 KEYWORDS=
 IUSE=



[gentoo-commits] proj/sci:master commit in: sci-biology/velvetk/

2015-01-10 Thread Justin Lecher
commit: e342408b204d6966864aaebca258927ba00935e6
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 12:56:34 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 12:56:34 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=e342408b

sci-biology/velvetk: Simplify ebuild

Package-Manager: portage-2.2.15

---
 sci-biology/velvetk/ChangeLog   | 3 +++
 sci-biology/velvetk/velvetk-20120606.ebuild | 6 +-
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/sci-biology/velvetk/ChangeLog b/sci-biology/velvetk/ChangeLog
index 20f03c2..b1bf464 100644
--- a/sci-biology/velvetk/ChangeLog
+++ b/sci-biology/velvetk/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org velvetk-20120606.ebuild:
+  Simplify ebuild
+
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz
   velvetk-20120606.ebuild:
   added perl to dependencies

diff --git a/sci-biology/velvetk/velvetk-20120606.ebuild 
b/sci-biology/velvetk/velvetk-20120606.ebuild
index b6bfc94..ae7940c 100644
--- a/sci-biology/velvetk/velvetk-20120606.ebuild
+++ b/sci-biology/velvetk/velvetk-20120606.ebuild
@@ -20,10 +20,6 @@ RDEPEND=${DEPEND}
 
 S=${WORKDIR}
 
-src_prepare(){
-   cp -p ${DISTDIR}/velvetk.pl . || die
-}
-
 src_install(){
-   dobin velvetk.pl
+   dobin ${DISTDIR}/velvetk.pl
 }



[gentoo-commits] gentoo-x86 commit in media-video/ffmpeg: ChangeLog ffmpeg-2.5.3.ebuild

2015-01-10 Thread Alexis Ballier (aballier)
aballier15/01/10 11:24:50

  Modified: ChangeLog
  Added:ffmpeg-2.5.3.ebuild
  Log:
  version bump
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
160F534A)

Revision  ChangesPath
1.820media-video/ffmpeg/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-video/ffmpeg/ChangeLog?rev=1.820view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-video/ffmpeg/ChangeLog?rev=1.820content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-video/ffmpeg/ChangeLog?r1=1.819r2=1.820

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-video/ffmpeg/ChangeLog,v
retrieving revision 1.819
retrieving revision 1.820
diff -u -r1.819 -r1.820
--- ChangeLog   1 Jan 2015 14:35:47 -   1.819
+++ ChangeLog   10 Jan 2015 11:24:50 -  1.820
@@ -1,6 +1,11 @@
 # ChangeLog for media-video/ffmpeg
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-video/ffmpeg/ChangeLog,v 1.819 
2015/01/01 14:35:47 dilfridge Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-video/ffmpeg/ChangeLog,v 1.820 
2015/01/10 11:24:50 aballier Exp $
+
+*ffmpeg-2.5.3 (10 Jan 2015)
+
+  10 Jan 2015; Alexis Ballier aball...@gentoo.org +ffmpeg-2.5.3.ebuild:
+  version bump
 
   01 Jan 2015; Andreas K. Huettel dilfri...@gentoo.org +ChangeLog-2014,
   ChangeLog: Split ChangeLog



1.1  media-video/ffmpeg/ffmpeg-2.5.3.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-video/ffmpeg/ffmpeg-2.5.3.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-video/ffmpeg/ffmpeg-2.5.3.ebuild?rev=1.1content-type=text/plain

Index: ffmpeg-2.5.3.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/media-video/ffmpeg/ffmpeg-2.5.3.ebuild,v 1.1 
2015/01/10 11:24:50 aballier Exp $

EAPI=5

# Subslot: libavutil major.libavcodec major.libavformat major
# Since FFmpeg ships several libraries, subslot is kind of limited here.
# Most consumers will use those three libraries, if a less used library
# changes its soname, consumers will have to be rebuilt the old way
# (preserve-libs).
# If, for example, a package does not link to libavformat and only libavformat
# changes its ABI then this package will be rebuilt needlessly. Hence, such a
# package is free _not_ to := depend on FFmpeg but I would strongly encourage
# doing so since such a case is unlikely.
FFMPEG_SUBSLOT=54.56.56

SCM=
if [ ${PV#} != ${PV} ] ; then
SCM=git-2
EGIT_REPO_URI=git://source.ffmpeg.org/ffmpeg.git
fi

inherit eutils flag-o-matic multilib multilib-minimal toolchain-funcs ${SCM}

DESCRIPTION=Complete solution to record, convert and stream audio and video. 
Includes libavcodec
HOMEPAGE=http://ffmpeg.org/;
if [ ${PV#} != ${PV} ] ; then
SRC_URI=
elif [ ${PV%_p*} != ${PV} ] ; then # Snapshot
SRC_URI=mirror://gentoo/${P}.tar.bz2
else # Release
SRC_URI=http://ffmpeg.org/releases/${P/_/-}.tar.bz2;
fi
FFMPEG_REVISION=${PV#*_p}

LICENSE=GPL-2 amr? ( GPL-3 ) encode? ( aac? ( GPL-3 ) ) samba? ( GPL-3 )
SLOT=0/${FFMPEG_SUBSLOT}
if [ ${PV#} = ${PV} ] ; then
KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86 
~amd64-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux
fi
IUSE=
aac aacplus alsa amr amrenc bindist bluray bs2b +bzip2 cdio celt
cpudetection debug doc +encode examples faac fdk flite fontconfig frei0r
fribidi gme gnutls gsm +hardcoded-tables +iconv iec61883 ieee1394 
jack
jpeg2k ladspa libass libcaca libsoxr libv4l lzma modplug mp3 +network
openal opengl openssl opus oss pic pulseaudio quvi rtmp samba 
schroedinger
sdl speex ssh static-libs test theora threads truetype twolame v4l vaapi
vdpau vorbis vpx wavpack webp X x264 x265 xcb xvid +zlib zvbi


ARM_CPU_FEATURES=armv5te armv6 armv6t2 neon armvfp:vfp
MIPS_CPU_FEATURES=mips32r2 mipsdspr1 mipsdspr2 mipsfpu
PPC_CPU_FEATURES=altivec
X86_CPU_FEATURES=3dnow:amd3dnow 3dnowext:amd3dnowext avx avx2 fma3 fma4 mmx 
mmxext sse sse2 sse3 ssse3 sse4 sse4_2:sse42 xop

# String for CPU features in the useflag[:configure_option] form
# if :configure_option isn't set, it will use 'useflag' as configure option
CPU_FEATURES=
${ARM_CPU_FEATURES}
${MIPS_CPU_FEATURES}
${PPC_CPU_FEATURES}
${X86_CPU_FEATURES}


for i in ${CPU_FEATURES}; do
IUSE=${IUSE} ${i%:*}
done

FFTOOLS=aviocat cws2fws ffescape ffeval ffhash fourcc2pixfmt graph2dot 
ismindex pktdumper qt-faststart trasher

for i in ${FFTOOLS}; do
IUSE=${IUSE} 

[gentoo-commits] proj/sci:master commit in: /

2015-01-10 Thread Justin Lecher
commit: f0322e5019d42cc97f5478c89a9089e7bdd13faf
Author: Justin jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 13:56:48 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 13:56:48 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=f0322e50

Merge pull request #314 from marbre/mosstack

Fix mosstack QA warnings: Clean Manifest


 sci-astronomy/mosstack/Manifest | 1 -
 1 file changed, 1 deletion(-)



[gentoo-commits] proj/sci:master commit in: sci-biology/Atlas/

2015-01-10 Thread Justin Lecher
commit: 3fb0e8b842288c6a03c8d9421d0a264c151ec5d4
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 13:48:03 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 13:48:03 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3fb0e8b8

sci-biology/Atlas: Fix license

Package-Manager: portage-2.2.15

---
 sci-biology/Atlas/Atlas-2005.ebuild | 2 +-
 sci-biology/Atlas/ChangeLog | 3 +++
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/sci-biology/Atlas/Atlas-2005.ebuild 
b/sci-biology/Atlas/Atlas-2005.ebuild
index 29b546d..b51c535 100644
--- a/sci-biology/Atlas/Atlas-2005.ebuild
+++ b/sci-biology/Atlas/Atlas-2005.ebuild
@@ -9,7 +9,7 @@ 
HOMEPAGE=https://www.hgsc.bcm.edu/software/atlas-whole-genome-assembly-suite;
 
SRC_URI=https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas-src.tgz;
 # 
https://www.hgsc.bcm.edu/sites/default/files/software/Atlas/atlas2005-linux.tgz
 
-LICENSE=
+LICENSE=ATLAS
 SLOT=0
 KEYWORDS=
 IUSE=

diff --git a/sci-biology/Atlas/ChangeLog b/sci-biology/Atlas/ChangeLog
index d8bcd83..3cfb2f0 100644
--- a/sci-biology/Atlas/ChangeLog
+++ b/sci-biology/Atlas/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org Atlas-2005.ebuild:
+  Fix license
+
 *Atlas-2005 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz +Atlas-2005.ebuild,



[gentoo-commits] proj/sci:master commit in: licenses/

2015-01-10 Thread Justin Lecher
commit: 70b93150b6a87d4ce06af8327c66f417e1c628d3
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 13:46:38 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 13:46:38 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=70b93150

New license

Signed-off-by: Justin Lecher jlec AT gentoo.org

---
 licenses/ATLAS | 48 
 1 file changed, 48 insertions(+)

diff --git a/licenses/ATLAS b/licenses/ATLAS
new file mode 100644
index 000..e6f11a8
--- /dev/null
+++ b/licenses/ATLAS
@@ -0,0 +1,48 @@
+NON-COMMERCIAL LICENSE AGREEMENT
+
+This Non-commercial License Agreement (Agreement) has been adopted for use by 
Baylor College of Medicine (BCM), a Texas non-profit corporation, for the 
licensing of software programs for use for internal research purposes only by 
individuals or employees of an academic institution or private company. 
+
+ 1.DEFINITIONS
+
+ 1.1 The term Licensed Code shall mean the software entitled Atlas Whole 
Genome Assembly Suite, developed
+by (in alphabetical order): Rui Chen, James Durbin, Amy Egan, Paul Havlak, and 
Yanru Ren (collectively the Authors), employees of BCM.  
+
+ 2.GRANT OF LICENSE
+
+ 2.1 BCM hereby grants to you, or the corporation or institution you 
represent, identified in the above form (LICENSEE), a non-exclusive and 
non-transferable, right and license to use, modify, prepare derivative works of 
and execute solely for internal, research (non-commercial) purposes, the 
Licensed Code. This license shall be for use only by the LICENSEE only at the 
site (physical address) where the code is downloaded.  The foregoing license 
does not include the right to copy the Licensed Code, or portions thereof, to 
another site for any reason.
+
+ 2.2 LICENSEE acknowledges that the Licensed Code, including, but not limited 
to, all rights under federal copyright laws, are and shall remain at all times 
the exclusive property of BCM. Any modifications or derivative works based on 
the Licensed Code are and shall be considered part of the Licensed Code and 
ownership thereof is retained by or vested in BCM.  LICENSEE shall provide to 
BCM reports of such modifications or derivative works and such modifications or 
derivative works shall be made available to BCM upon receipt of a written 
request for such from BCM.
+
+ 2.3 LICENSEE shall not distribute or transfer the Licensed Code, or any 
portion thereof, to any other company, 
+institution or individual without the prior written permission of BCM.
+
+ 3.NO UPGRADES/NO SERVICE/DELIVERED AS IS
+
+ 3.1 It is expressly understood and agreed that the Licensed Code and Manuals 
will be delivered to LICENSEE on as AS IS basis as of the Agreement Date and 
that neither BCM nor the Authors will be responsible for future support of the 
Licensed Code.
+
+ 3.2 LICENSEE acknowledges that LICENSEE will not be entitled to any Licensed 
Code upgrades and that BCM will not provide maintenance for the Licensed Code.  
If LICENSEE finds defects, bugs, in the Licensed Code, LICENSEE shall notify 
BCM of the existence of the bugs. Neither BCM nor the Authors shall, however, 
have any obligation to fix any bugs in the Licensed Code.
+
+ 4.DISCLAIMER OF WARRANTY
+
+ BCM MAKES NO WARRANTIES OR REPRESENTATIONS, EXPRESS OR IMPLIED, INCLUDING, 
BUT NOT LIMITED TO, WARRANTIES OF FITNESS OR MERCHANTABILITY, REGARDING OR WITH 
RESPECT TO THE LICENSED CODE. BCM MAKES NO WARRANTIES OR REPRESENTATIONS, 
EXPRESS OR IMPLIED, OF THE PATENTABILITY OR COPYRIGHTABILITY OF ANY OF THE 
LICENSED CODE OR OF THE ENFORCEABILITY OF ANY PATENTS OR COPYRIGHTS ISSUING 
THEREUPON, IF ANY, OR THAT THE LICENSED CODE, IS OR SHALL BE FREE FROM 
INFRINGEMENT OF ANY PATENT, COPYRIGHT OR OTHER RIGHTS OF THIRD PARTIES. BCM 
MAKES NO WARRANTIES OR REPRESENTATIONS, EXPRESS OR IMPLIED, THAT THE LICENSED 
CODE SATISFIES REGULATORY REQUIREMENTS. LICENSEE ACKNOWLEDGE THAT THE LICENSED 
CODE IS BEING LICENSED AS IS. BCM HAS NOT TESTED THE LICENSED CODE FOR VIRUSES 
OR OTHER DEFECTS NOR HAS BCM COMPLETED TESTING THE LICENSED CODE.
+
+ 5.LIMITATION OF DAMAGES
+
+ BCM shall not be liable for any monetary damages whatsoever with respect to 
LICENSEE's use of the Licensed Code nor shall BCM be liable for any special, 
indirect, incidental or consequential damages arising out of or related to this 
Agreement, even if BCM is advised of such damages.
+
+ 6.INDEMNIFICATION
+
+ LICENSEE will indemnify and hold BCM, BCM's trustees, officers, agents, 
employees, students, persons holding academic appointments within BCM, and 
affiliated hospitals (the Indemnified parties) harmless from and against any 
and all claims, causes of action or lawsuits for personal injury (including 
death), property damage, and any other losses of any nature together with 
related expenses (including attorney's fees) made against the Indemnified 
parties resulting directly or indirectly from the 

[gentoo-commits] gentoo-x86 commit in net-p2p/bitcoin-qt/files: 0.9-openssl-101k.patch 0.8-openssl-101k.patch

2015-01-10 Thread Anthony G. Basile (blueness)
blueness15/01/10 17:19:55

  Added:0.9-openssl-101k.patch 0.8-openssl-101k.patch
  Log:
  Version bump for bug #536228
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0xF52D4BBA)

Revision  ChangesPath
1.1  net-p2p/bitcoin-qt/files/0.9-openssl-101k.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoin-qt/files/0.9-openssl-101k.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoin-qt/files/0.9-openssl-101k.patch?rev=1.1content-type=text/plain

Index: 0.9-openssl-101k.patch
===
diff --git a/src/key.cpp b/src/key.cpp
index 5b261bb..a845ba1 100644
--- a/src/key.cpp
+++ b/src/key.cpp
@@ -227,10 +227,23 @@ public:
 }
 
 bool Verify(const uint256 hash, const std::vectorunsigned char vchSig) 
{
-// -1 = error, 0 = bad sig, 1 = good
-if (ECDSA_verify(0, (unsigned char*)hash, sizeof(hash), vchSig[0], 
vchSig.size(), pkey) != 1)
+if (vchSig.empty())
 return false;
-return true;
+
+// New versions of OpenSSL will reject non-canonical DER signatures. 
de/re-serialize first.
+unsigned char *norm_der = NULL;
+ECDSA_SIG *norm_sig = ECDSA_SIG_new();
+const unsigned char* sigptr = vchSig[0];
+d2i_ECDSA_SIG(norm_sig, sigptr, vchSig.size());
+int derlen = i2d_ECDSA_SIG(norm_sig, norm_der);
+ECDSA_SIG_free(norm_sig);
+if (derlen = 0)
+return false;
+
+// -1 = error, 0 = bad sig, 1 = good
+bool ret = ECDSA_verify(0, (unsigned char*)hash, sizeof(hash), 
norm_der, derlen, pkey) == 1;
+OPENSSL_free(norm_der);
+return ret;
 }
 
 bool SignCompact(const uint256 hash, unsigned char *p64, int rec) {



1.1  net-p2p/bitcoin-qt/files/0.8-openssl-101k.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoin-qt/files/0.8-openssl-101k.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-p2p/bitcoin-qt/files/0.8-openssl-101k.patch?rev=1.1content-type=text/plain

Index: 0.8-openssl-101k.patch
===
diff --git a/src/key.cpp b/src/key.cpp
index 75114c6..7fcb17d 100644
--- a/src/key.cpp
+++ b/src/key.cpp
@@ -376,11 +376,23 @@ bool CKey::SetCompactSignature(uint256 hash, const 
std::vectorunsigned char v
 
 bool CKey::Verify(uint256 hash, const std::vectorunsigned char vchSig)
 {
-// -1 = error, 0 = bad sig, 1 = good
-if (ECDSA_verify(0, (unsigned char*)hash, sizeof(hash), vchSig[0], 
vchSig.size(), pkey) != 1)
+if (vchSig.empty())
 return false;
 
-return true;
+// New versions of OpenSSL will reject non-canonical DER signatures. 
de/re-serialize first.
+unsigned char *norm_der = NULL;
+ECDSA_SIG *norm_sig = ECDSA_SIG_new();
+const unsigned char* sigptr = vchSig[0];
+d2i_ECDSA_SIG(norm_sig, sigptr, vchSig.size());
+int derlen = i2d_ECDSA_SIG(norm_sig, norm_der);
+ECDSA_SIG_free(norm_sig);
+if (derlen = 0)
+return false;
+
+// -1 = error, 0 = bad sig, 1 = good
+bool ret = ECDSA_verify(0, (unsigned char*)hash, sizeof(hash), norm_der, 
derlen, pkey) == 1;
+OPENSSL_free(norm_der);
+return ret;
 }
 
 bool CKey::VerifyCompact(uint256 hash, const std::vectorunsigned char 
vchSig)






[gentoo-commits] gentoo-x86 commit in dev-cpp/lucene++: lucene++-3.0.6.ebuild ChangeLog metadata.xml

2015-01-10 Thread Johannes Huber (johu)
johu15/01/10 13:37:49

  Added:lucene++-3.0.6.ebuild ChangeLog metadata.xml
  Log:
  New package. Ebuild by Nikoli nik...@gmx.us. Bug #528550.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
F3CFD2BD)

Revision  ChangesPath
1.1  dev-cpp/lucene++/lucene++-3.0.6.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/lucene++-3.0.6.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/lucene++-3.0.6.ebuild?rev=1.1content-type=text/plain

Index: lucene++-3.0.6.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/dev-cpp/lucene++/lucene++-3.0.6.ebuild,v 1.1 
2015/01/10 13:37:49 johu Exp $

EAPI=5

MY_P=LucenePlusPlus-rel_${PV}
inherit cmake-utils multilib

DESCRIPTION=C++ port of Java Lucene library, a high-performance, full-featured 
text search engine
HOMEPAGE=https://github.com/luceneplusplus/LucenePlusPlus;
SRC_URI=https://github.com/luceneplusplus/LucenePlusPlus/archive/rel_${PV}.tar.gz
 - ${P}.tar.gz

LICENSE=|| ( LGPL-3 Apache-2.0 )
SLOT=0
KEYWORDS=~amd64 ~x86
IUSE=debug

DEPEND=dev-libs/boost:=
RDEPEND=${DEPEND}

RESTRICT=test

S=${WORKDIR}/${MY_P}

DOCS=( AUTHORS README.rst )

PATCHES=(
${FILESDIR}/${P}-disable-demos.patch
${FILESDIR}/${P}-disable-tests.patch
${FILESDIR}/${P}-fix-installing-headers.patch
)

src_configure() {
local mycmakeargs=(
-DLIB_DESTINATION=$(get_libdir)
)
cmake-utils_src_configure
}



1.1  dev-cpp/lucene++/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/ChangeLog?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/ChangeLog?rev=1.1content-type=text/plain

Index: ChangeLog
===
# ChangeLog for dev-cpp/lucene++
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/dev-cpp/lucene++/ChangeLog,v 1.1 2015/01/10 
13:37:49 johu Exp $

*lucene++-3.0.6 (10 Jan 2015)

  10 Jan 2015; Johannes Huber j...@gentoo.org +lucene++-3.0.6.ebuild,
  +files/lucene++-3.0.6-disable-demos.patch,
  +files/lucene++-3.0.6-disable-tests.patch,
  +files/lucene++-3.0.6-fix-installing-headers.patch, +metadata.xml:
  New package. Ebuild by Nikoli nik...@gmx.us. Bug #528550.




1.1  dev-cpp/lucene++/metadata.xml

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/metadata.xml?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/metadata.xml?rev=1.1content-type=text/plain

Index: metadata.xml
===
?xml version=1.0 encoding=UTF-8?
!DOCTYPE pkgmetadata SYSTEM http://www.gentoo.org/dtd/metadata.dtd;
pkgmetadata
maintainer
emailj...@gentoo.org/email
nameJohannes Huber/name
/maintainer
upstream
remote-id 
type=githubluceneplusplus/luceneplusplus/remote-id
/upstream
/pkgmetadata







[gentoo-commits] gentoo-x86 commit in dev-cpp/lucene++/files: lucene++-3.0.6-fix-installing-headers.patch lucene++-3.0.6-disable-tests.patch lucene++-3.0.6-disable-demos.patch

2015-01-10 Thread Johannes Huber (johu)
johu15/01/10 13:37:49

  Added:lucene++-3.0.6-fix-installing-headers.patch
lucene++-3.0.6-disable-tests.patch
lucene++-3.0.6-disable-demos.patch
  Log:
  New package. Ebuild by Nikoli nik...@gmx.us. Bug #528550.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
F3CFD2BD)

Revision  ChangesPath
1.1  
dev-cpp/lucene++/files/lucene++-3.0.6-fix-installing-headers.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/files/lucene++-3.0.6-fix-installing-headers.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/files/lucene++-3.0.6-fix-installing-headers.patch?rev=1.1content-type=text/plain

Index: lucene++-3.0.6-fix-installing-headers.patch
===
From: rezso re...@example.com
Date: Mon, 19 May 2014 09:20:40 +0100
Subject: [PATCH] fix installing lucene++ headers in 3.0.6

Origin: upstream, 
https://github.com/luceneplusplus/LucenePlusPlus/commit/994f03cf736229044a168835ae7387696041658f
Description: backport upstream patch to fix missing headers install

Index: lucene++-3.0.6/CMakeLists.txt
===
--- lucene++-3.0.6.orig/CMakeLists.txt
+++ lucene++-3.0.6/CMakeLists.txt
@@ -139,6 +139,14 @@ if(NOT WIN32)
 DESTINATION ${LIB_DESTINATION}/pkgconfig)
 endif()
 
+#
+# install Config.h
+#
+install(
+  FILES
+  ${CMAKE_CURRENT_BINARY_DIR}/include/Config.h
+  DESTINATION include/lucene++)
+
 
 # custom targets
 
Index: lucene++-3.0.6/src/core/CMakeLists.txt
===
--- lucene++-3.0.6.orig/src/core/CMakeLists.txt
+++ lucene++-3.0.6/src/core/CMakeLists.txt
@@ -20,7 +20,7 @@ file(GLOB_RECURSE lucene_internal_header
 )
 
 file(GLOB_RECURSE lucene_headers
-  include/*.h
+  ${lucene++_SOURCE_DIR}/include/*.h
 )
 
 add_definitions(-DLPP_BUILDING_LIB)



1.1  dev-cpp/lucene++/files/lucene++-3.0.6-disable-tests.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/files/lucene++-3.0.6-disable-tests.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/files/lucene++-3.0.6-disable-tests.patch?rev=1.1content-type=text/plain

Index: lucene++-3.0.6-disable-tests.patch
===
Forwarded: https://github.com/luceneplusplus/LucenePlusPlus/pull/64
Author: Gianfranco Costamagna costamagnagianfra...@yahoo.it
Description: Disabling tests until we find a proper way for building and 
including gtest
 In the next release this might become possible, after commit 83356d9681fb52
 
https://github.com/luceneplusplus/LucenePlusPlus/commit/83356d9681fb52a4c190d2cf033279006c1bf57d
Last-Update: 2014-08-25
--- a/CMakeExternal.txt
+++ b/CMakeExternal.txt
@@ -1,5 +1,6 @@
 # Enable ExternalProject CMake module
 include(ExternalProject)
+find_package(Subversion REQUIRED)
 
 # main directory for external projects
 set_directory_properties(PROPERTIES EP_PREFIX 
${CMAKE_CURRENT_BINARY_DIR}/ThirdParty)
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -49,7 +49,6 @@
 # bootstrap
 
 
-find_package(Subversion REQUIRED)
 find_package(Threads REQUIRED)
 find_package(Boost COMPONENTS
   date_time
@@ -114,13 +113,13 @@
   ${CMAKE_CURRENT_BINARY_DIR}/include
 )
 
-include(CMakeExternal.txt)
-enable_testing()
+#include(CMakeExternal.txt)
+#enable_testing()
 
 add_subdirectory(src/core)
 add_subdirectory(src/contrib)
 #add_subdirectory(src/demo)
-add_subdirectory(src/test)
+#add_subdirectory(src/test)
 
 #
 # install pkg-config file



1.1  dev-cpp/lucene++/files/lucene++-3.0.6-disable-demos.patch

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/files/lucene++-3.0.6-disable-demos.patch?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-cpp/lucene++/files/lucene++-3.0.6-disable-demos.patch?rev=1.1content-type=text/plain

Index: lucene++-3.0.6-disable-demos.patch
===
diff --git a/CMakeLists.txt b/CMakeLists.txt
index 9217c21..d4e7b86 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -118,7 +118,7 @@ enable_testing()
 
 add_subdirectory(src/core)
 add_subdirectory(src/contrib)
-add_subdirectory(src/demo)
+#add_subdirectory(src/demo)
 add_subdirectory(src/test)
 
 #






[gentoo-commits] gentoo-x86 commit in profiles: ChangeLog

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 13:49:46

  Modified: ChangeLog
  Log:
  Update multilib masks

Revision  ChangesPath
1.9676   profiles/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?rev=1.9676view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?rev=1.9676content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?r1=1.9675r2=1.9676

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v
retrieving revision 1.9675
retrieving revision 1.9676
diff -u -r1.9675 -r1.9676
--- ChangeLog   10 Jan 2015 13:44:28 -  1.9675
+++ ChangeLog   10 Jan 2015 13:49:46 -  1.9676
@@ -1,11 +1,16 @@
 # ChangeLog for profile directory
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v 1.9675 2015/01/10 
13:44:28 chithanh Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v 1.9676 2015/01/10 
13:49:46 pacho Exp $
 #
 # This ChangeLog should include records for all changes in profiles directory.
 # Only typo fixes which don't affect portage/repoman behaviour could be avoided
 # here. If in doubt put a record here!
 
+  10 Jan 2015; Pacho Ramos pa...@gentoo.org
+  arch/amd64/no-emul-linux-x86/package.use.stable.mask,
+  arch/amd64/package.use.stable.mask:
+  Update multilib masks
+
   10 Jan 2015; Chí-Thanh Christopher Nguyễn chith...@gentoo.org
   package.mask:
   Add mask for old and vulnerable xorg-server.






[gentoo-commits] gentoo-x86 commit in profiles/arch/amd64/no-emul-linux-x86: package.use.stable.mask

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 13:49:46

  Modified: package.use.stable.mask
  Log:
  Update multilib masks

Revision  ChangesPath
1.31 
profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask?rev=1.31view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask?rev=1.31content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask?r1=1.30r2=1.31

Index: package.use.stable.mask
===
RCS file: 
/var/cvsroot/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask,v
retrieving revision 1.30
retrieving revision 1.31
diff -u -r1.30 -r1.31
--- package.use.stable.mask 16 Dec 2014 14:55:22 -  1.30
+++ package.use.stable.mask 10 Jan 2015 13:49:46 -  1.31
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask,v
 1.30 2014/12/16 14:55:22 pacho Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/profiles/arch/amd64/no-emul-linux-x86/package.use.stable.mask,v
 1.31 2015/01/10 13:49:46 pacho Exp $
 
 # Michał Górny mgo...@gentoo.org (14 Sep 2014)
 # on behalf of gx86-multilib project multi...@gentoo.org
@@ -481,6 +481,7 @@
 x11-libs/pangox-compat -abi_x86_32
 x11-libs/pixman -abi_x86_32
 x11-libs/xvba-video -abi_x86_32
+x11-misc/virtualgl -abi_x86_32
 x11-proto/compositeproto -abi_x86_32
 x11-proto/damageproto -abi_x86_32
 x11-proto/fixesproto -abi_x86_32






[gentoo-commits] gentoo-x86 commit in profiles/arch/amd64: package.use.stable.mask

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 13:49:46

  Modified: package.use.stable.mask
  Log:
  Update multilib masks

Revision  ChangesPath
1.105profiles/arch/amd64/package.use.stable.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/package.use.stable.mask?rev=1.105view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/package.use.stable.mask?rev=1.105content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/arch/amd64/package.use.stable.mask?r1=1.104r2=1.105

Index: package.use.stable.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/arch/amd64/package.use.stable.mask,v
retrieving revision 1.104
retrieving revision 1.105
diff -u -r1.104 -r1.105
--- package.use.stable.mask 16 Dec 2014 14:55:22 -  1.104
+++ package.use.stable.mask 10 Jan 2015 13:49:46 -  1.105
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/profiles/arch/amd64/package.use.stable.mask,v 1.104 
2014/12/16 14:55:22 pacho Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/profiles/arch/amd64/package.use.stable.mask,v 1.105 
2015/01/10 13:49:46 pacho Exp $
 
 # When you add an entry to the top of this file, add your name, the date, and
 # an explanation of why something is getting masked. Please be extremely
@@ -503,6 +503,7 @@
 x11-libs/pangox-compat abi_x86_32
 x11-libs/pixman abi_x86_32
 x11-libs/xvba-video abi_x86_32
+x11-misc/virtualgl abi_x86_32
 x11-proto/compositeproto abi_x86_32
 x11-proto/damageproto abi_x86_32
 x11-proto/fixesproto abi_x86_32






[gentoo-commits] proj/sci:master commit in: /

2015-01-10 Thread Justin Lecher
commit: 1e18b4a7dd7146ad77b556623f8da427365e68d6
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:39:54 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:39:54 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=1e18b4a7

Merge remote-tracking branch 'github/master'

* github/master:
  sci-biology/trans-abys: Fix license and keywords


 licenses/bcca_2010   | 453 +++
 sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild |   5 +-
 2 files changed, 456 insertions(+), 2 deletions(-)



[gentoo-commits] proj/sci:master commit in: sci-biology/jigsaw/

2015-01-10 Thread Justin Lecher
commit: 583132244328c0ef75426d5183427e4af938c81b
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:28:15 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:28:15 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=58313224

sci-biology/jigsaw: Fix license

Package-Manager: portage-2.2.15

---
 sci-biology/jigsaw/ChangeLog| 3 +++
 sci-biology/jigsaw/jigsaw-3.2.10.ebuild | 7 ++-
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/sci-biology/jigsaw/ChangeLog b/sci-biology/jigsaw/ChangeLog
index b49b3e1..5ee8c5a 100644
--- a/sci-biology/jigsaw/ChangeLog
+++ b/sci-biology/jigsaw/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org jigsaw-3.2.10.ebuild:
+  Fix license
+
 *jigsaw-3.2.10 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz

diff --git a/sci-biology/jigsaw/jigsaw-3.2.10.ebuild 
b/sci-biology/jigsaw/jigsaw-3.2.10.ebuild
index ba8825d..0eb701e 100644
--- a/sci-biology/jigsaw/jigsaw-3.2.10.ebuild
+++ b/sci-biology/jigsaw/jigsaw-3.2.10.ebuild
@@ -6,12 +6,9 @@ EAPI=5
 
 DESCRIPTION=Combine results from external gene predictors into final gene 
models
 HOMEPAGE=http://www.cbcb.umd.edu/software/jigsaw;
-SRC_URI=http://cbcb.umd.edu/software/jigsaw/${P}.tar.gz;
+SRC_URI=http://cbcb.umd.edu/software/jigsaw/${P}.tar.gz;
 
-LICENSE=
+LICENSE=Artistic
 SLOT=0
 KEYWORDS=
 IUSE=
-
-DEPEND=
-RDEPEND=${DEPEND}



[gentoo-commits] proj/sci:master commit in: sci-biology/pb-jelly/

2015-01-10 Thread Justin Lecher
commit: 12f917d1a346fb94b28fa917d3e7111f06339bd7
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:32:58 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:32:58 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=12f917d1

sci-biology/pb-jelly: Fix license; add missing []

Package-Manager: portage-2.2.15

---
 sci-biology/pb-jelly/ChangeLog  | 3 +++
 sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild | 7 ---
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/sci-biology/pb-jelly/ChangeLog b/sci-biology/pb-jelly/ChangeLog
index 7e85562..9ab6dfe 100644
--- a/sci-biology/pb-jelly/ChangeLog
+++ b/sci-biology/pb-jelly/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org pb-jelly-14.9.9.ebuild:
+  Fix license; add missing []
+
 *pb-jelly-14.9.9 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz

diff --git a/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild 
b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
index 78ddcfe..3aaaf54 100644
--- a/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
+++ b/sci-biology/pb-jelly/pb-jelly-14.9.9.ebuild
@@ -12,11 +12,12 @@ DESCRIPTION=Close gaps using PacBio RS or 454 FLX+ reads
 HOMEPAGE=https://www.hgsc.bcm.edu/software/jelly;
 SRC_URI=http://sourceforge.net/projects/pb-jelly/files/PBSuite_14.9.9.tgz - 
pb-jelly-14.9.9.tgz
 
-LICENSE=
+LICENSE=BSD-2
 SLOT=0
 KEYWORDS=
 IUSE=
 
-DEPEND=sci-biology/blasr
-   =dev-python/networkx-1.1 # upstream says Versions past v1.1 have 
been shown to have many issues.
+DEPEND=
+   sci-biology/blasr
+   =dev-python/networkx-1.1[${PYTHON_USEDEP}] # upstream says Versions 
past v1.1 have been shown to have many issues.
 RDEPEND=${DEPEND}



[gentoo-commits] proj/sci:master commit in: sci-biology/pb-honey/

2015-01-10 Thread Justin Lecher
commit: 5c10a2ccb85f7ccaf754dff2edbdff03f62de1e5
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:31:05 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:31:05 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5c10a2cc

sci-biology/pb-honey: Fix license; add missing []

Package-Manager: portage-2.2.15

---
 sci-biology/pb-honey/ChangeLog   |  7 +++
 sci-biology/pb-honey/pb-honey-14.1.15.ebuild | 13 +++--
 2 files changed, 14 insertions(+), 6 deletions(-)

diff --git a/sci-biology/pb-honey/ChangeLog b/sci-biology/pb-honey/ChangeLog
new file mode 100644
index 000..f5e93dc
--- /dev/null
+++ b/sci-biology/pb-honey/ChangeLog
@@ -0,0 +1,7 @@
+# ChangeLog for sci-biology/pb-honey
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+  10 Jan 2015; Justin Lecher j...@gentoo.org pb-honey-14.1.15.ebuild:
+  Fix license; add missing []
+

diff --git a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild 
b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild
index c5440bb..0c3bfef 100644
--- a/sci-biology/pb-honey/pb-honey-14.1.15.ebuild
+++ b/sci-biology/pb-honey/pb-honey-14.1.15.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -12,14 +12,15 @@ DESCRIPTION=Structural variant identification (SNV) using 
long reads (over 10kb
 HOMEPAGE=https://www.hgsc.bcm.edu/software/honey;
 
SRC_URI=http://sourceforge.net/projects/pb-jelly/files/PBHoney/PBHoney_14.1.15.tgz;
 
-LICENSE=
+LICENSE=BSD-2
 SLOT=0
 KEYWORDS=
 IUSE=
 
-DEPEND=sci-biology/samtools
+DEPEND=
+   sci-biology/samtools
sci-biology/blasr
-   sci-biology/pysam
-   dev-python/h5py
-   dev-python/numpy
+   sci-biology/pysam[${PYTHON_USEDEP}]
+   dev-python/h5py[${PYTHON_USEDEP}]
+   dev-python/numpy[${PYTHON_USEDEP}]
 RDEPEND=${DEPEND}



[gentoo-commits] proj/sci:master commit in: sci-biology/primerD/

2015-01-10 Thread Justin Lecher
commit: 682702ad64751e60f5208af904c5f900f3931c5d
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:35:02 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:35:02 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=682702ad

sci-biology/primerD: Fix license

Package-Manager: portage-2.2.15

---
 sci-biology/primerD/ChangeLog| 3 +++
 sci-biology/primerD/primerD-1.0.0.ebuild | 5 +
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-biology/primerD/ChangeLog b/sci-biology/primerD/ChangeLog
index f75108a..55298f3 100644
--- a/sci-biology/primerD/ChangeLog
+++ b/sci-biology/primerD/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org primerD-1.0.0.ebuild:
+  Fix license
+
 *primerD-1.0.0 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz

diff --git a/sci-biology/primerD/primerD-1.0.0.ebuild 
b/sci-biology/primerD/primerD-1.0.0.ebuild
index 21163db..2dbabc8 100644
--- a/sci-biology/primerD/primerD-1.0.0.ebuild
+++ b/sci-biology/primerD/primerD-1.0.0.ebuild
@@ -8,10 +8,7 @@ DESCRIPTION=Design degenerate primers
 HOMEPAGE=http://mblab.wustl.edu/software.html;
 SRC_URI=http://mblab.wustl.edu/software/download/primerD.tar.gz - 
primerD-1.0.tar.gz
 
-LICENSE=
+LICENSE=LGPL-2.1
 SLOT=0
 KEYWORDS=
 IUSE=
-
-DEPEND=
-RDEPEND=${DEPEND}



[gentoo-commits] proj/sci:master commit in: /

2015-01-10 Thread Justin Lecher
commit: bedef4b638d4cbead16f369c58f613487aa854d9
Author: Justin jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:36:49 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:36:49 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=bedef4b6

Merge pull request #315 from marbre/trans-abyss

sci-biology/trans-abys: Fix license and keywords


 licenses/bcca_2010   | 453 +++
 sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild |   5 +-
 2 files changed, 456 insertions(+), 2 deletions(-)



[gentoo-commits] proj/sci:master commit in: sci-biology/SEECER/

2015-01-10 Thread Justin Lecher
commit: 495d790cea315b38978ec1d8738f7dd961c118a3
Author: Justin Lecher jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 14:13:39 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 14:13:39 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=495d790c

sci-biology/SEECER: Fix license

Package-Manager: portage-2.2.15

---
 sci-biology/SEECER/ChangeLog   | 3 +++
 sci-biology/SEECER/SEECER-0.1.3.ebuild | 9 +
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/sci-biology/SEECER/ChangeLog b/sci-biology/SEECER/ChangeLog
index 1e865a6..1ac7a38 100644
--- a/sci-biology/SEECER/ChangeLog
+++ b/sci-biology/SEECER/ChangeLog
@@ -2,6 +2,9 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Justin Lecher j...@gentoo.org SEECER-0.1.3.ebuild:
+  Fix license
+
 *SEECER-0.1.3 (07 Jan 2015)
 
   07 Jan 2015; Martin Mokrejs mmokr...@fold.natur.cuni.cz

diff --git a/sci-biology/SEECER/SEECER-0.1.3.ebuild 
b/sci-biology/SEECER/SEECER-0.1.3.ebuild
index 7f3833e..d415a01 100644
--- a/sci-biology/SEECER/SEECER-0.1.3.ebuild
+++ b/sci-biology/SEECER/SEECER-0.1.3.ebuild
@@ -6,15 +6,17 @@ EAPI=5
 
 DESCRIPTION=Error corrector for RNA-Seq reads
 HOMEPAGE=http://sb.cs.cmu.edu/seecer/;
-SRC_URI=http://sb.cs.cmu.edu/seecer/downloads/SEECER-0.1.3.tar.gz
+SRC_URI=
+   http://sb.cs.cmu.edu/seecer/downloads/SEECER-0.1.3.tar.gz
http://sb.cs.cmu.edu/seecer/downloads/manual.pdf;
 
-LICENSE=
+LICENSE=GPL-3
 SLOT=0
 KEYWORDS=
 IUSE=
 
-DEPEND=sci-libs/gsl
+DEPEND=
+   sci-libs/gsl
sci-biology/seqan
sci-biology/jellyfish
 RDEPEND=${DEPEND}
@@ -28,6 +30,5 @@ S=${S}/SEECER
 # Uses:
 # libgomp.so.1 = /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/libgomp.so.1 
(0x7f7853faf000)
 
-
 # dobin bin/run_seecer.sh
 # dodoc ${DISTDIR}/manual.pdf



[gentoo-commits] gentoo-x86 commit in net-misc/networkmanager-openconnect: networkmanager-openconnect-1.0.0.ebuild ChangeLog networkmanager-openconnect-0.9.8.6.ebuild

2015-01-10 Thread Pacho Ramos (pacho)
pacho   15/01/10 15:00:39

  Modified: ChangeLog
  Added:networkmanager-openconnect-1.0.0.ebuild
  Removed:  networkmanager-openconnect-0.9.8.6.ebuild
  Log:
  Version bump, drop old
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
A188FBD4)

Revision  ChangesPath
1.33 net-misc/networkmanager-openconnect/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openconnect/ChangeLog?rev=1.33view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openconnect/ChangeLog?rev=1.33content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openconnect/ChangeLog?r1=1.32r2=1.33

Index: ChangeLog
===
RCS file: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager-openconnect/ChangeLog,v
retrieving revision 1.32
retrieving revision 1.33
diff -u -r1.32 -r1.33
--- ChangeLog   19 Dec 2014 13:42:34 -  1.32
+++ ChangeLog   10 Jan 2015 15:00:39 -  1.33
@@ -1,6 +1,13 @@
 # ChangeLog for net-misc/networkmanager-openconnect
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager-openconnect/ChangeLog,v 1.32 
2014/12/19 13:42:34 pacho Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager-openconnect/ChangeLog,v 1.33 
2015/01/10 15:00:39 pacho Exp $
+
+*networkmanager-openconnect-1.0.0 (10 Jan 2015)
+
+  10 Jan 2015; Pacho Ramos pa...@gentoo.org
+  +networkmanager-openconnect-1.0.0.ebuild,
+  -networkmanager-openconnect-0.9.8.6.ebuild:
+  Version bump, drop old
 
   19 Dec 2014; Pacho Ramos pa...@gentoo.org
   networkmanager-openconnect-0.9.10.0.ebuild:



1.1  
net-misc/networkmanager-openconnect/networkmanager-openconnect-1.0.0.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openconnect/networkmanager-openconnect-1.0.0.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/networkmanager-openconnect/networkmanager-openconnect-1.0.0.ebuild?rev=1.1content-type=text/plain

Index: networkmanager-openconnect-1.0.0.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/net-misc/networkmanager-openconnect/networkmanager-openconnect-1.0.0.ebuild,v
 1.1 2015/01/10 15:00:39 pacho Exp $

EAPI=5
GCONF_DEBUG=no
GNOME_ORG_MODULE=NetworkManager-${PN##*-}

inherit gnome2 user

DESCRIPTION=NetworkManager OpenConnect plugin
HOMEPAGE=https://wiki.gnome.org/Projects/NetworkManager;

LICENSE=GPL-2+
SLOT=0
KEYWORDS=~amd64 ~x86
IUSE=gtk

RDEPEND=
app-crypt/libsecret
=net-misc/networkmanager-0.9.10:=
=dev-libs/glib-2.32:2
=dev-libs/dbus-glib-0.74
dev-libs/libxml2:2
=net-misc/openconnect-3.02:=
gtk? ( =x11-libs/gtk+-3.4:3 )

DEPEND=${RDEPEND}
sys-devel/gettext
dev-util/intltool
virtual/pkgconfig


src_configure() {
gnome2_src_configure \
--disable-more-warnings \
--disable-static \
$(use_with gtk gnome) \
$(use_with gtk authdlg)
}

pkg_postinst() {
gnome2_pkg_postinst
enewgroup nm-openconnect
enewuser nm-openconnect -1 -1 -1 nm-openconnect
}






[gentoo-commits] gentoo-x86 commit in dev-haskell/project-template: ChangeLog project-template-0.1.3.ebuild

2015-01-10 Thread Michael Orlitzky (mjo)
mjo 15/01/10 18:01:23

  Modified: ChangeLog
  Removed:  project-template-0.1.3.ebuild
  Log:
  Remove unbuildable version, bug #514408.
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0x6F48D3DA05C2DADB!)

Revision  ChangesPath
1.5  dev-haskell/project-template/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/project-template/ChangeLog?rev=1.5view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/project-template/ChangeLog?rev=1.5content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-haskell/project-template/ChangeLog?r1=1.4r2=1.5

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-haskell/project-template/ChangeLog,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- ChangeLog   14 Dec 2014 11:41:49 -  1.4
+++ ChangeLog   10 Jan 2015 18:01:23 -  1.5
@@ -1,6 +1,9 @@
 # ChangeLog for dev-haskell/project-template
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-haskell/project-template/ChangeLog,v 
1.4 2014/12/14 11:41:49 gienah Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-haskell/project-template/ChangeLog,v 
1.5 2015/01/10 18:01:23 mjo Exp $
+
+  10 Jan 2015; Michael Orlitzky m...@gentoo.org 
-project-template-0.1.3.ebuild:
+  Remove unbuildable version, bug #514408.
 
 *project-template-0.1.4.2 (14 Dec 2014)
 






[gentoo-commits] gentoo-x86 commit in app-emacs/multi-term/files: - New directory

2015-01-10 Thread Ulrich Mueller (ulm)
ulm 15/01/10 19:27:00

  Log:
  Directory /var/cvsroot/gentoo-x86/app-emacs/multi-term/files added to the 
repository



[gentoo-commits] gentoo-x86 commit in games-action/gltron: gltron-0.70-r1.ebuild ChangeLog

2015-01-10 Thread Michael Sterrett (mr_bones_)
mr_bones_15/01/10 19:46:47

  Modified: gltron-0.70-r1.ebuild ChangeLog
  Log:
  EAPI=5
  
  (Portage version: 2.2.14/cvs/Linux x86_64, unsigned Manifest commit)

Revision  ChangesPath
1.10 games-action/gltron/gltron-0.70-r1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/games-action/gltron/gltron-0.70-r1.ebuild?rev=1.10view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/games-action/gltron/gltron-0.70-r1.ebuild?rev=1.10content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/games-action/gltron/gltron-0.70-r1.ebuild?r1=1.9r2=1.10

Index: gltron-0.70-r1.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/games-action/gltron/gltron-0.70-r1.ebuild,v
retrieving revision 1.9
retrieving revision 1.10
diff -u -r1.9 -r1.10
--- gltron-0.70-r1.ebuild   1 Jan 2015 18:20:35 -   1.9
+++ gltron-0.70-r1.ebuild   10 Jan 2015 19:46:47 -  1.10
@@ -1,8 +1,8 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/games-action/gltron/gltron-0.70-r1.ebuild,v 
1.9 2015/01/01 18:20:35 tupone Exp $
+# $Header: /var/cvsroot/gentoo-x86/games-action/gltron/gltron-0.70-r1.ebuild,v 
1.10 2015/01/10 19:46:47 mr_bones_ Exp $
 
-EAPI=4
+EAPI=5
 inherit eutils games
 
 DESCRIPTION=3d tron, just like the movie
@@ -22,7 +22,7 @@
media-libs/sdl-sound[vorbis,mikmod]
media-libs/smpeg
media-libs/libmikmod
-RDEPEND=${DEPEND}
+RDEPEND=${DEPEND}
 
 src_prepare() {
epatch \
@@ -31,8 +31,7 @@
${FILESDIR}/${P}-debian.patch
sed -i \
-e '/^gltron_LINK/s/$/ $(LDFLAGS)/' \
-   Makefile.in \
-   || die 'sed failed'
+   Makefile.in || die
 }
 
 src_configure() {



1.18 games-action/gltron/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/games-action/gltron/ChangeLog?rev=1.18view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/games-action/gltron/ChangeLog?rev=1.18content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/games-action/gltron/ChangeLog?r1=1.17r2=1.18

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/games-action/gltron/ChangeLog,v
retrieving revision 1.17
retrieving revision 1.18
diff -u -r1.17 -r1.18
--- ChangeLog   1 Jan 2015 18:20:35 -   1.17
+++ ChangeLog   10 Jan 2015 19:46:47 -  1.18
@@ -1,6 +1,9 @@
 # ChangeLog for games-action/gltron
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/games-action/gltron/ChangeLog,v 1.17 
2015/01/01 18:20:35 tupone Exp $
+# $Header: /var/cvsroot/gentoo-x86/games-action/gltron/ChangeLog,v 1.18 
2015/01/10 19:46:47 mr_bones_ Exp $
+
+  10 Jan 2015; Michael Sterrett mr_bon...@gentoo.org gltron-0.70-r1.ebuild:
+  EAPI=5
 
   01 Jan 2015; Tupone Alfredo tup...@gentoo.org gltron-0.70-r1.ebuild:
   EAPI 4






[gentoo-commits] gentoo-x86 commit in net-analyzer/traceroute: traceroute-2.0.20.ebuild ChangeLog

2015-01-10 Thread Tobias Klausmann (klausman)
klausman15/01/10 20:44:32

  Modified: traceroute-2.0.20.ebuild ChangeLog
  Log:
  Stable on alpha, bug 517380
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
CE5D54E8)

Revision  ChangesPath
1.8  net-analyzer/traceroute/traceroute-2.0.20.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-analyzer/traceroute/traceroute-2.0.20.ebuild?rev=1.8view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-analyzer/traceroute/traceroute-2.0.20.ebuild?rev=1.8content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-analyzer/traceroute/traceroute-2.0.20.ebuild?r1=1.7r2=1.8

Index: traceroute-2.0.20.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/net-analyzer/traceroute/traceroute-2.0.20.ebuild,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- traceroute-2.0.20.ebuild7 Dec 2014 20:28:51 -   1.7
+++ traceroute-2.0.20.ebuild10 Jan 2015 20:44:32 -  1.8
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/net-analyzer/traceroute/traceroute-2.0.20.ebuild,v 1.7 
2014/12/07 20:28:51 maekke Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/net-analyzer/traceroute/traceroute-2.0.20.ebuild,v 1.8 
2015/01/10 20:44:32 klausman Exp $
 
 EAPI=5
 
@@ -12,7 +12,7 @@
 
 LICENSE=GPL-2 LGPL-2.1
 SLOT=0
-KEYWORDS=~alpha amd64 arm ~arm64 hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 ~sh 
~sparc ~x86 ~amd64-linux ~arm-linux ~x86-linux
+KEYWORDS=alpha amd64 arm ~arm64 hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 ~sh 
~sparc ~x86 ~amd64-linux ~arm-linux ~x86-linux
 IUSE=static
 
 RDEPEND=!net-misc/iputils-20121221-r1



1.105net-analyzer/traceroute/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-analyzer/traceroute/ChangeLog?rev=1.105view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-analyzer/traceroute/ChangeLog?rev=1.105content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-analyzer/traceroute/ChangeLog?r1=1.104r2=1.105

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/net-analyzer/traceroute/ChangeLog,v
retrieving revision 1.104
retrieving revision 1.105
diff -u -r1.104 -r1.105
--- ChangeLog   7 Dec 2014 20:28:51 -   1.104
+++ ChangeLog   10 Jan 2015 20:44:32 -  1.105
@@ -1,6 +1,9 @@
 # ChangeLog for net-analyzer/traceroute
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/net-analyzer/traceroute/ChangeLog,v 1.104 
2014/12/07 20:28:51 maekke Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/net-analyzer/traceroute/ChangeLog,v 1.105 
2015/01/10 20:44:32 klausman Exp $
+
+  10 Jan 2015; Tobias Klausmann klaus...@gentoo.org traceroute-2.0.20.ebuild:
+  Stable on alpha, bug 517380
 
   07 Dec 2014; Markus Meier mae...@gentoo.org traceroute-2.0.20.ebuild:
   arm stable, bug #517380






[gentoo-commits] gentoo-x86 commit in net-misc/whois: ChangeLog whois-5.1.5.ebuild

2015-01-10 Thread Tobias Klausmann (klausman)
klausman15/01/10 21:10:27

  Modified: ChangeLog whois-5.1.5.ebuild
  Log:
  Stable on alpha, bug 524264
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
CE5D54E8)

Revision  ChangesPath
1.210net-misc/whois/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/whois/ChangeLog?rev=1.210view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/whois/ChangeLog?rev=1.210content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/whois/ChangeLog?r1=1.209r2=1.210

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/net-misc/whois/ChangeLog,v
retrieving revision 1.209
retrieving revision 1.210
diff -u -r1.209 -r1.210
--- ChangeLog   4 Jan 2015 18:28:59 -   1.209
+++ ChangeLog   10 Jan 2015 21:10:27 -  1.210
@@ -1,6 +1,9 @@
 # ChangeLog for net-misc/whois
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/net-misc/whois/ChangeLog,v 1.209 2015/01/04 
18:28:59 radhermit Exp $
+# $Header: /var/cvsroot/gentoo-x86/net-misc/whois/ChangeLog,v 1.210 2015/01/10 
21:10:27 klausman Exp $
+
+  10 Jan 2015; Tobias Klausmann klaus...@gentoo.org whois-5.1.5.ebuild:
+  Stable on alpha, bug 524264
 
 *whois-5.2.3 (04 Jan 2015)
 



1.5  net-misc/whois/whois-5.1.5.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/whois/whois-5.1.5.ebuild?rev=1.5view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/whois/whois-5.1.5.ebuild?rev=1.5content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/whois/whois-5.1.5.ebuild?r1=1.4r2=1.5

Index: whois-5.1.5.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/net-misc/whois/whois-5.1.5.ebuild,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- whois-5.1.5.ebuild  10 Oct 2014 20:13:11 -  1.4
+++ whois-5.1.5.ebuild  10 Jan 2015 21:10:27 -  1.5
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/net-misc/whois/whois-5.1.5.ebuild,v 1.4 
2014/10/10 20:13:11 maekke Exp $
+# $Header: /var/cvsroot/gentoo-x86/net-misc/whois/whois-5.1.5.ebuild,v 1.5 
2015/01/10 21:10:27 klausman Exp $
 
 EAPI=4
 inherit eutils toolchain-funcs
@@ -12,7 +12,7 @@
 
 LICENSE=GPL-2
 SLOT=0
-KEYWORDS=~alpha amd64 arm hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 
~x86-fbsd ~x86-freebsd ~amd64-linux ~x86-linux
+KEYWORDS=alpha amd64 arm hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc ~x86 
~x86-fbsd ~x86-freebsd ~amd64-linux ~x86-linux
 IUSE=iconv idn nls
 RESTRICT=test #59327
 






[gentoo-commits] gentoo-x86 commit in app-i18n/man-pages-ru: ChangeLog

2015-01-10 Thread Sergey Popov (pinkbyte)
pinkbyte15/01/10 21:20:29

  Modified: ChangeLog
  Log:
  Fix mistake in last stabilizations
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
0x1F357D42)

Revision  ChangesPath
1.59 app-i18n/man-pages-ru/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/ChangeLog?rev=1.59view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/ChangeLog?rev=1.59content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/ChangeLog?r1=1.58r2=1.59

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/ChangeLog,v
retrieving revision 1.58
retrieving revision 1.59
diff -u -r1.58 -r1.59
--- ChangeLog   10 Jan 2015 21:15:58 -  1.58
+++ ChangeLog   10 Jan 2015 21:20:29 -  1.59
@@ -1,18 +1,17 @@
 # ChangeLog for app-i18n/man-pages-ru
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/ChangeLog,v 1.58 
2015/01/10 21:15:58 pinkbyte Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/ChangeLog,v 1.59 
2015/01/10 21:20:29 pinkbyte Exp $
 
   10 Jan 2015; Sergey Popov pinkb...@gentoo.org
   man-pages-ru-3.56.2172.1866.20140202.ebuild:
   Stable on s390, wrt bug #534858
 
   10 Jan 2015; Mikle Kolyada zlog...@gentoo.org
-  man-pages-ru-3.56.2172.1866.20140202.ebuild,
-  man-pages-ru-3.71.2209.1992.20140911.ebuild:
+  man-pages-ru-3.56.2172.1866.20140202.ebuild:
   amd64 stable wrt bug #534858
 
   10 Jan 2015; Mikle Kolyada zlog...@gentoo.org
-  man-pages-ru-3.71.2209.1992.20140911.ebuild:
+  man-pages-ru-3.56.2172.1866.20140202.ebuild:
   amd64 stable wrt bug #534858
 
 *man-pages-ru-3.71.2209.1992.20140911 (10 Jan 2015)






[gentoo-commits] dev/bircoph:master commit in: profiles/, sci-visualization/opendx/files/, sci-visualization/opendx/

2015-01-10 Thread Andrew Savchenko
commit: 25473a4b4fbceefd699e0decab7baea6b0e030f0
Author: Andrew Savchenko bircoph AT gmail DOT com
AuthorDate: Sat Jan 10 21:34:09 2015 +
Commit: Andrew Savchenko bircoph AT gmail DOT com
CommitDate: Sat Jan 10 21:34:09 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=dev/bircoph.git;a=commit;h=25473a4b

opendx: in tree now

---
 profiles/categories|   1 -
 sci-visualization/opendx/ChangeLog | 229 --
 sci-visualization/opendx/Manifest  |  15 -
 .../opendx/files/opendx-4.3.2-sys.h.patch  |  23 --
 .../files/opendx-4.4.4-concurrent-make-fix.patch   |  66 -
 .../opendx/files/opendx-4.4.4-dx-errno.patch   |  11 -
 .../opendx/files/opendx-4.4.4-gcc43.patch  | 315 
 .../opendx/files/opendx-4.4.4-installpaths.patch   | 330 -
 .../opendx/files/opendx-4.4.4-libtool.patch|  11 -
 .../opendx/files/opendx-4.4.4-magick.patch |  41 ---
 .../opendx/files/opendx-4.4.4-null.patch   |  14 -
 .../opendx/files/opendx-4.4.4-open.patch   |  34 ---
 .../opendx/files/opendx-4.4.4-szip.patch   |  55 
 .../opendx/files/opendx-4.4.4-xdg.patch|  26 --
 sci-visualization/opendx/metadata.xml  |  23 --
 sci-visualization/opendx/opendx-4.4.4-r5.ebuild|  82 -
 16 files changed, 1276 deletions(-)

diff --git a/profiles/categories b/profiles/categories
index 06fb07d..056aef8 100644
--- a/profiles/categories
+++ b/profiles/categories
@@ -22,7 +22,6 @@ net-libs
 net-misc
 net-print
 sci-geosciences
-sci-visualization
 sys-apps
 sys-boot
 sys-cluster

diff --git a/sci-visualization/opendx/ChangeLog 
b/sci-visualization/opendx/ChangeLog
deleted file mode 100644
index e6af7dd..000
--- a/sci-visualization/opendx/ChangeLog
+++ /dev/null
@@ -1,229 +0,0 @@
-# ChangeLog for sci-visualization/opendx
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-visualization/opendx/ChangeLog,v 1.28 
2012/10/24 19:45:22 ulm Exp $
-
-  24 Oct 2012; Ulrich Müller u...@gentoo.org opendx-4.4.4-r4.ebuild:
-  Update dependency after package move from x11-libs/openmotif to
-  x11-libs/motif.
-
-  01 Aug 2012; Sébastien Fabbro bicat...@gentoo.org
-  +files/opendx-4.4.4-magick.patch, -files/20-opendx-revdep,
-  opendx-4.4.4-r4.ebuild:
-  Build for newer imagemagick and add possibility for graphicsmagick as well,
-  fixing bug #314375. Keyword for x86-linux, switch to EAPI 4
-
-  15 Feb 2012; Kacper Kowalik xarthis...@gentoo.org opendx-4.4.4-r4.ebuild:
-  Add prefix love. Thanks to Richard Yao r...@cs.stonybrook.edu for the 
patch.
-  Fixes bug 403771
-
-  19 Nov 2010; Sébastien Fabbro bicat...@gentoo.org opendx-4.4.4-r4.ebuild:
-  Remove the no hdri restriction on imagemagick dependency. Thanks Jaroslaw
-  Kalinowski (bug #344819)
-
-  10 Oct 2010; Ulrich Mueller u...@gentoo.org opendx-4.4.4-r4.ebuild:
-  Fix openmotif dependency.
-
-  09 Mar 2010; Jonathan Callen a...@gentoo.org opendx-4.4.4-r4.ebuild:
-  QA: When not using an absolute path, you MUST NOT use a file extension
-  (.png, .svg, or .xpm) on the icon name for make_desktop_entry
-
-  20 Jan 2010; Markus Meier mae...@gentoo.org opendx-4.4.4-r4.ebuild:
-  amd64 stable, bug #299835
-
-  18 Jan 2010; Sébastien Fabbro bicat...@gentoo.org
-  opendx-4.3.2-r1.ebuild, opendx-4.4.4-r4.ebuild:
-  Added dependencies for OpenGL (bug #299835). Replaced IPL-1 license to IBM
-  since they are the same (bug #301180)
-
-  17 Jan 2010; Christian Faulhammer fa...@gentoo.org
-  opendx-4.4.4-r4.ebuild:
-  stable x86, bug 299835
-
-  12 Jan 2010; nixnut nix...@gentoo.org opendx-4.4.4-r4.ebuild:
-  ppc stable #299835
-
-*opendx-4.4.4-r4 (03 Dec 2009)
-
-  03 Dec 2009; Sébastien Fabbro bicat...@gentoo.org
-  -opendx-4.4.4-r3.ebuild, +opendx-4.4.4-r4.ebuild,
-  files/opendx-4.4.4-installpaths.patch:
-  Revision bump for the install paths according to bug #295395. Thanks
-  Francois Bissey to follow-up
-
-*opendx-4.4.4-r3 (27 Nov 2009)
-
-  27 Nov 2009; Sébastien Fabbro bicat...@gentoo.org -opendx-4.4.4.ebuild,
-  -opendx-4.4.4-r2.ebuild, +opendx-4.4.4-r3.ebuild,
-  -files/opendx-4.4.4-gcc43-fedora.patch, files/opendx-4.4.4-gcc43.patch,
-  -files/opendx-4.4.4-install.patch, +files/opendx-4.4.4-installpaths.patch,
-  +files/opendx-4.4.4-null.patch, -files/opendx-compressed-man.patch:
-  Added a patch for ssh over X, fixed a bunch of install paths (including
-  bug #294858), and cleaned a bit the ebuild
-
-  08 Oct 2009; Sébastien Fabbro bicat...@gentoo.org
-  +opendx-4.4.4-r2.ebuild, files/opendx-4.4.4-concurrent-make-fix.patch,
-  +files/opendx-4.4.4-dx-errno.patch,
-  +files/opendx-4.4.4-gcc43-fedora.patch, +files/opendx-4.4.4-install.patch,
-  +files/opendx-4.4.4-open.patch, +files/opendx-4.4.4-szip.patch,
-  +files/opendx-4.4.4-xdg.patch, metadata.xml:
-  Import from the science overlay. Thanks François Bissey for his efforts.
-
-  

[gentoo-commits] gentoo-x86 commit in dev-ruby/parser: parser-2.2.0.2.ebuild ChangeLog parser-2.2.0.ebuild

2015-01-10 Thread Manuel Rueger (mrueg)
mrueg   15/01/10 22:14:18

  Modified: ChangeLog
  Added:parser-2.2.0.2.ebuild
  Removed:  parser-2.2.0.ebuild
  Log:
  Version bump. Remove old.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key )

Revision  ChangesPath
1.9  dev-ruby/parser/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/parser/ChangeLog?rev=1.9view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/parser/ChangeLog?rev=1.9content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/parser/ChangeLog?r1=1.8r2=1.9

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-ruby/parser/ChangeLog,v
retrieving revision 1.8
retrieving revision 1.9
diff -u -r1.8 -r1.9
--- ChangeLog   28 Dec 2014 12:22:46 -  1.8
+++ ChangeLog   10 Jan 2015 22:14:18 -  1.9
@@ -1,6 +1,12 @@
 # ChangeLog for dev-ruby/parser
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-ruby/parser/ChangeLog,v 1.8 2014/12/28 
12:22:46 mrueg Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-ruby/parser/ChangeLog,v 1.9 2015/01/10 
22:14:18 mrueg Exp $
+
+*parser-2.2.0.2 (10 Jan 2015)
+
+  10 Jan 2015; Manuel Rüger mr...@gentoo.org +parser-2.2.0.2.ebuild,
+  -parser-2.2.0.ebuild:
+  Version bump. Remove old.
 
 *parser-2.2.0.1 (28 Dec 2014)
 



1.1  dev-ruby/parser/parser-2.2.0.2.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/parser/parser-2.2.0.2.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/parser/parser-2.2.0.2.ebuild?rev=1.1content-type=text/plain

Index: parser-2.2.0.2.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/dev-ruby/parser/parser-2.2.0.2.ebuild,v 1.1 
2015/01/10 22:14:18 mrueg Exp $

EAPI=5
USE_RUBY=ruby19 ruby20 ruby21

RUBY_FAKEGEM_RECIPE_DOC=yard
RUBY_FAKEGEM_TASK_TEST=test
RUBY_FAKEGEM_EXTRADOC=CHANGELOG.md README.md

RUBY_FAKEGEM_VERSION=${PV/_pre/.pre.}

inherit ruby-fakegem

DESCRIPTION=A production-ready Ruby parser written in pure Ruby
HOMEPAGE=https://github.com/whitequark/parser;

LICENSE=MIT
SLOT=0
KEYWORDS=~amd64
IUSE=

ruby_add_bdepend test? (
dev-ruby/minitest:5
dev-ruby/racc
dev-ruby/cliver )
ruby_add_rdepend dev-ruby/ast
dev-ruby/slop:3

all_ruby_prepare() {
sed -i -e /[Bb]undler/d Rakefile || die
sed -i -e /simplecov/,+35d test/helper.rb || die
}






[gentoo-commits] gentoo-x86 commit in dev-ruby/ruby-opengl: ruby-opengl-0.9.2.ebuild ChangeLog ruby-opengl-0.9.1.ebuild ruby-opengl-0.9.0.ebuild

2015-01-10 Thread Manuel Rueger (mrueg)
mrueg   15/01/10 22:16:47

  Modified: ChangeLog
  Added:ruby-opengl-0.9.2.ebuild
  Removed:  ruby-opengl-0.9.1.ebuild ruby-opengl-0.9.0.ebuild
  Log:
  Version bump. Remove old.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key )

Revision  ChangesPath
1.69 dev-ruby/ruby-opengl/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/ruby-opengl/ChangeLog?rev=1.69view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/ruby-opengl/ChangeLog?rev=1.69content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/ruby-opengl/ChangeLog?r1=1.68r2=1.69

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-ruby/ruby-opengl/ChangeLog,v
retrieving revision 1.68
retrieving revision 1.69
diff -u -r1.68 -r1.69
--- ChangeLog   8 Oct 2014 05:41:32 -   1.68
+++ ChangeLog   10 Jan 2015 22:16:47 -  1.69
@@ -1,6 +1,12 @@
 # ChangeLog for dev-ruby/ruby-opengl
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-ruby/ruby-opengl/ChangeLog,v 1.68 
2014/10/08 05:41:32 graaff Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-ruby/ruby-opengl/ChangeLog,v 1.69 
2015/01/10 22:16:47 mrueg Exp $
+
+*ruby-opengl-0.9.2 (10 Jan 2015)
+
+  10 Jan 2015; Manuel Rüger mr...@gentoo.org +ruby-opengl-0.9.2.ebuild,
+  -ruby-opengl-0.9.0.ebuild, -ruby-opengl-0.9.1.ebuild:
+  Version bump. Remove old.
 
 *ruby-opengl-0.9.1 (08 Oct 2014)
 



1.1  dev-ruby/ruby-opengl/ruby-opengl-0.9.2.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/ruby-opengl/ruby-opengl-0.9.2.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/ruby-opengl/ruby-opengl-0.9.2.ebuild?rev=1.1content-type=text/plain

Index: ruby-opengl-0.9.2.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/dev-ruby/ruby-opengl/ruby-opengl-0.9.2.ebuild,v 1.1 
2015/01/10 22:16:47 mrueg Exp $

EAPI=5
USE_RUBY=ruby19 ruby20 ruby21

RUBY_FAKEGEM_TASK_DOC=

# Two tests fails but the README already indicates that this may not
# work. Additionally these tests require access to video devices such as
# /dev/nvidiactl.
RUBY_FAKEGEM_TASK_TEST=

RUBY_FAKEGEM_NAME=opengl

RUBY_FAKEGEM_EXTRADOC=History.rdoc README.rdoc

inherit multilib ruby-fakegem

DESCRIPTION=OpenGL / GLUT bindings for ruby
HOMEPAGE=https://github.com/larskanis/opengl;

LICENSE=MIT
SLOT=0
KEYWORDS=~amd64 ~hppa ~ppc ~ppc64 ~x86

IUSE=

DEPEND+= virtual/opengl
media-libs/freeglut
RDEPEND+= virtual/opengl
media-libs/freeglut

each_ruby_configure() {
${RUBY} -Cext/opengl extconf.rb || die
}

each_ruby_compile() {
emake -C ext/opengl V=1

cp ext/*/*$(get_modname) lib/ || die
}

all_ruby_install() {
all_fakegem_install

insinto /usr/share/doc/${PF}/examples
doins -r examples/*
}






[gentoo-commits] gentoo-x86 commit in app-i18n/man-pages-ru: man-pages-ru-3.71.2209.1992.20140911.ebuild man-pages-ru-3.56.2172.1866.20140202.ebuild ChangeLog

2015-01-10 Thread Mikle Kolyada (zlogene)
zlogene 15/01/10 19:21:52

  Modified: man-pages-ru-3.71.2209.1992.20140911.ebuild
man-pages-ru-3.56.2172.1866.20140202.ebuild
ChangeLog
  Log:
  amd64 stable wrt bug #534858
  
  (Portage version: 2.2.14/cvs/Linux x86_64, signed Manifest commit with key 
0xC42EB5D6)

Revision  ChangesPath
1.3  
app-i18n/man-pages-ru/man-pages-ru-3.71.2209.1992.20140911.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.71.2209.1992.20140911.ebuild?rev=1.3view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.71.2209.1992.20140911.ebuild?rev=1.3content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.71.2209.1992.20140911.ebuild?r1=1.2r2=1.3

Index: man-pages-ru-3.71.2209.1992.20140911.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.71.2209.1992.20140911.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- man-pages-ru-3.71.2209.1992.20140911.ebuild 10 Jan 2015 19:19:05 -  
1.2
+++ man-pages-ru-3.71.2209.1992.20140911.ebuild 10 Jan 2015 19:21:52 -  
1.3
@@ -1,6 +1,6 @@
 # Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.71.2209.1992.20140911.ebuild,v
 1.2 2015/01/10 19:19:05 zlogene Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.71.2209.1992.20140911.ebuild,v
 1.3 2015/01/10 19:21:52 zlogene Exp $
 
 EAPI=5
 
@@ -14,7 +14,7 @@
 
 LICENSE=FDL-1.3
 SLOT=0
-KEYWORDS=~alpha amd64 ~arm ~arm64 ~hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 
~sh ~sparc ~x86 ~amd64-linux ~x86-linux
+KEYWORDS=~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 
~sh ~sparc ~x86 ~amd64-linux ~x86-linux
 
 DEPEND=
 RDEPEND=virtual/man



1.2  
app-i18n/man-pages-ru/man-pages-ru-3.56.2172.1866.20140202.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.56.2172.1866.20140202.ebuild?rev=1.2view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.56.2172.1866.20140202.ebuild?rev=1.2content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.56.2172.1866.20140202.ebuild?r1=1.1r2=1.2

Index: man-pages-ru-3.56.2172.1866.20140202.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.56.2172.1866.20140202.ebuild,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- man-pages-ru-3.56.2172.1866.20140202.ebuild 5 Feb 2014 10:01:39 -   
1.1
+++ man-pages-ru-3.56.2172.1866.20140202.ebuild 10 Jan 2015 19:21:52 -  
1.2
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.56.2172.1866.20140202.ebuild,v
 1.1 2014/02/05 10:01:39 pinkbyte Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/man-pages-ru-3.56.2172.1866.20140202.ebuild,v
 1.2 2015/01/10 19:21:52 zlogene Exp $
 
 EAPI=5
 
@@ -14,7 +14,7 @@
 
 LICENSE=FDL-1.3
 SLOT=0
-KEYWORDS=~alpha ~amd64 ~arm ~arm64 ~hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 
~sh ~sparc ~x86 ~amd64-linux ~x86-linux
+KEYWORDS=~alpha amd64 ~arm ~arm64 ~hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 
~sh ~sparc ~x86 ~amd64-linux ~x86-linux
 
 DEPEND=
 RDEPEND=virtual/man



1.57 app-i18n/man-pages-ru/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/ChangeLog?rev=1.57view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/ChangeLog?rev=1.57content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-i18n/man-pages-ru/ChangeLog?r1=1.56r2=1.57

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/ChangeLog,v
retrieving revision 1.56
retrieving revision 1.57
diff -u -r1.56 -r1.57
--- ChangeLog   10 Jan 2015 19:19:05 -  1.56
+++ ChangeLog   10 Jan 2015 19:21:52 -  1.57
@@ -1,6 +1,11 @@
 # ChangeLog for app-i18n/man-pages-ru
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/ChangeLog,v 1.56 
2015/01/10 19:19:05 zlogene Exp $
+# $Header: /var/cvsroot/gentoo-x86/app-i18n/man-pages-ru/ChangeLog,v 1.57 
2015/01/10 19:21:52 zlogene Exp $
+
+  10 Jan 2015; Mikle Kolyada zlog...@gentoo.org
+  

[gentoo-commits] gentoo-x86 commit in app-emacs/multi-term: multi-term-1.2.ebuild ChangeLog metadata.xml Manifest

2015-01-10 Thread Ulrich Mueller (ulm)
ulm 15/01/10 19:33:22

  Added:multi-term-1.2.ebuild ChangeLog metadata.xml
Manifest
  Log:
  Initial import, bug 532884. Ebuild contributed by Michael Orlitzky 
m...@gentoo.org.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
9433907D693FB5B8!)

Revision  ChangesPath
1.1  app-emacs/multi-term/multi-term-1.2.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/multi-term/multi-term-1.2.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/multi-term/multi-term-1.2.ebuild?rev=1.1content-type=text/plain

Index: multi-term-1.2.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/app-emacs/multi-term/multi-term-1.2.ebuild,v 
1.1 2015/01/10 19:33:22 ulm Exp $

EAPI=5

inherit elisp

DESCRIPTION=Manage multiple terminal buffers in Emacs
HOMEPAGE=http://www.emacswiki.org/emacs/MultiTerm;
# Taken from http://www.emacswiki.org/emacs/download/${PN}.el
SRC_URI=http://dev.gentoo.org/~mjo/distfiles/${P}.el.xz;

LICENSE=GPL-3+
SLOT=0
KEYWORDS=~amd64 ~x86

SITEFILE=50${PN}-gentoo.el



1.1  app-emacs/multi-term/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/multi-term/ChangeLog?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/multi-term/ChangeLog?rev=1.1content-type=text/plain

Index: ChangeLog
===
# ChangeLog for app-emacs/multi-term
# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/app-emacs/multi-term/ChangeLog,v 1.1 
2015/01/10 19:33:22 ulm Exp $

*multi-term-1.2 (10 Jan 2015)

  10 Jan 2015; Ulrich Müller u...@gentoo.org +multi-term-1.2.ebuild,
  +files/50multi-term-gentoo.el, +metadata.xml:
  Initial import, bug 532884. Ebuild contributed by Michael Orlitzky
  m...@gentoo.org.




1.1  app-emacs/multi-term/metadata.xml

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/multi-term/metadata.xml?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/multi-term/metadata.xml?rev=1.1content-type=text/plain

Index: metadata.xml
===
?xml version=1.0 encoding=UTF-8?
!DOCTYPE pkgmetadata SYSTEM http://www.gentoo.org/dtd/metadata.dtd;
pkgmetadata
herdemacs/herd
maintainer  
  emailm...@gentoo.org/email
/maintainer
/pkgmetadata



1.1  app-emacs/multi-term/Manifest

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/multi-term/Manifest?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/app-emacs/multi-term/Manifest?rev=1.1content-type=text/plain

Index: Manifest
===
AUX 50multi-term-gentoo.el 333 SHA256 
0b68e5eb9bfdd5f1daca160e03cf957922c54d4ed1b8d1d9e900a7b4838c955b SHA512 
ec802e28ed8ff19b34eb394be23c5eec1e8a68542574669062048315106d8a814ce3cd6a38713c53b193f5bb66def03c4397e4c606d4380a2be7525e2f348953
 WHIRLPOOL 
dfd38b4fddccb2d1df15fd47da179b9a71d02e2233beea7ad3cef7f83f35f795b2bde4df5e107dd05225ba7efe7f8ce074d279b079143ca970df58722698f21b
DIST multi-term-1.2.el.xz 7876 SHA256 
8fbc1b1f08b4905eab33187d6a2eb82399308a98092f39eeb4f4c12849bce3b3 SHA512 
4041c7fa61aa6840aaad67d13a3e73717c2f9cbb4df68c4ba450c454d65aa4f3b3da749c346d0b06ac1ccf0c43b52dde771335148e03f66bbc561d84ba452180
 WHIRLPOOL 
02beb9b6d64ea4bda1fcb1a40e0f994c4bc50f4e80ad1f9fc4a448f9da2e3f6efa82e6931447478d09cc2695e3f719a5119435f01ad0149131a17506b387fd25
EBUILD multi-term-1.2.ebuild 452 SHA256 
6cb7da3d584a3a2af7ae5fd35f5ac6887a7e617d28af696d1478fadf2679e862 SHA512 
2b525272fcaf1f0520e195491d6f7161ab1372c276b0bb57caf956e76bf09252945e5516a30b57949ba30b5aae1f81188a9eb0f6a80cd43b9558e9f157457059
 WHIRLPOOL 
4fdf65e5373f443d66f8f59d2ce4891877e5aefdc680cfa998f5c4f83365d0c80d5b7c4006af6d30d8f1350948627cf80b315f47fc38d1326e76b9da021b54d8
MISC ChangeLog 361 SHA256 
83a339c47c72ee94fad4a2cb53c783cf3e98db41dfa98fa8fdb3fd43c8b083d2 SHA512 
8d4ac782bea9bd6d363eb26ed89f1a3f37e413574274268dec68aac11c107cfd61ce8a0a6e664aaf8dbd0223f658f2182eb1e5823c6562cee2bf4da1101d092f
 WHIRLPOOL 
5fe704b907aa68303656ccca1bd83a61ccc3d7250a901d75619f147c6ff35d67e0742e968293b3fa2f31e939c186b4e667b62ac13d153b9643e76b25f720c482
MISC metadata.xml 219 SHA256 
3b80fdc1bf8a7b2b23135379e8a1a7c230c80a2c19efca06043dcb7c0e5226ea SHA512 
ea75b81c049739c808aa3d6943f5b2dfb0dcd1cbf8d8400bae452c126e189835f73439eaf4d3ab33f2ce4b42868986119fc299459c9e99ac4b25e11a77d20487
 WHIRLPOOL 
5855436d8658e33209e444091ad4af6901739761cae08144fb313f5eeb0d70ea0f5add31f05ab80b251232c2b7dd3f960f99f7f05163744b07ab6767f1cec0eb






[gentoo-commits] gentoo-x86 commit in dev-python/python-daemon: python-daemon-2.0.1.ebuild ChangeLog

2015-01-10 Thread Dirkjan Ochtman (djc)
djc 15/01/10 19:41:44

  Modified: ChangeLog
  Added:python-daemon-2.0.1.ebuild
  Log:
  Version bump python-daemon to 2.0.1
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
30380381)

Revision  ChangesPath
1.16 dev-python/python-daemon/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/python-daemon/ChangeLog?rev=1.16view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/python-daemon/ChangeLog?rev=1.16content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/python-daemon/ChangeLog?r1=1.15r2=1.16

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-python/python-daemon/ChangeLog,v
retrieving revision 1.15
retrieving revision 1.16
diff -u -r1.15 -r1.16
--- ChangeLog   10 Jan 2015 18:59:45 -  1.15
+++ ChangeLog   10 Jan 2015 19:41:44 -  1.16
@@ -1,6 +1,11 @@
 # ChangeLog for dev-python/python-daemon
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-python/python-daemon/ChangeLog,v 1.15 
2015/01/10 18:59:45 djc Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-python/python-daemon/ChangeLog,v 1.16 
2015/01/10 19:41:44 djc Exp $
+
+*python-daemon-2.0.1 (10 Jan 2015)
+
+  10 Jan 2015; Dirkjan Ochtman d...@gentoo.org +python-daemon-2.0.1.ebuild:
+  Version bump python-daemon to 2.0.1
 
   10 Jan 2015; Dirkjan Ochtman d...@gentoo.org metadata.xml:
   Remove myself as a specific maintainer



1.1  dev-python/python-daemon/python-daemon-2.0.1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/python-daemon/python-daemon-2.0.1.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/python-daemon/python-daemon-2.0.1.ebuild?rev=1.1content-type=text/plain

Index: python-daemon-2.0.1.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: 
/var/cvsroot/gentoo-x86/dev-python/python-daemon/python-daemon-2.0.1.ebuild,v 
1.1 2015/01/10 19:41:44 djc Exp $

EAPI=5
PYTHON_COMPAT=( python{2_7,3_3,3_4} )

inherit distutils-r1

DESCRIPTION=Library to implement a well-behaved Unix daemon process
HOMEPAGE=http://pypi.python.org/pypi/python-daemon;
SRC_URI=mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz

LICENSE=PSF-2
SLOT=0
KEYWORDS=~amd64 ~arm ~x86
IUSE=test

RDEPEND==dev-python/lockfile-0.9[${PYTHON_USEDEP}]
DEPEND=${RDEPEND}
dev-python/setuptools[${PYTHON_USEDEP}]
test? (
=dev-python/unittest2-0.8.0[${PYTHON_USEDEP}]
=dev-python/mock-1.0[${PYTHON_USEDEP}]
dev-python/testtools[${PYTHON_USEDEP}]
=dev-python/testscenarios-0.4[${PYTHON_USEDEP}]
)

DOCS=( ChangeLog )

python_test() {
esetup.py test
}






[gentoo-commits] gentoo-x86 commit in dev-libs/libnl: ChangeLog libnl-3.2.25.ebuild

2015-01-10 Thread Tobias Klausmann (klausman)
klausman15/01/10 20:41:24

  Modified: ChangeLog libnl-3.2.25.ebuild
  Log:
  Stable on alpha, bug 509544
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
CE5D54E8)

Revision  ChangesPath
1.218dev-libs/libnl/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/libnl/ChangeLog?rev=1.218view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/libnl/ChangeLog?rev=1.218content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/libnl/ChangeLog?r1=1.217r2=1.218

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-libs/libnl/ChangeLog,v
retrieving revision 1.217
retrieving revision 1.218
diff -u -r1.217 -r1.218
--- ChangeLog   27 Dec 2014 19:24:50 -  1.217
+++ ChangeLog   10 Jan 2015 20:41:24 -  1.218
@@ -1,6 +1,9 @@
 # ChangeLog for dev-libs/libnl
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-libs/libnl/ChangeLog,v 1.217 2014/12/27 
19:24:50 ago Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-libs/libnl/ChangeLog,v 1.218 2015/01/10 
20:41:24 klausman Exp $
+
+  10 Jan 2015; Tobias Klausmann klaus...@gentoo.org libnl-3.2.25.ebuild:
+  Stable on alpha, bug 509544
 
   27 Dec 2014; Agostino Sarubbo a...@gentoo.org libnl-3.2.25.ebuild:
   Stable for amd64, wrt bug #509544



1.7  dev-libs/libnl/libnl-3.2.25.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/libnl/libnl-3.2.25.ebuild?rev=1.7view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/libnl/libnl-3.2.25.ebuild?rev=1.7content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-libs/libnl/libnl-3.2.25.ebuild?r1=1.6r2=1.7

Index: libnl-3.2.25.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/dev-libs/libnl/libnl-3.2.25.ebuild,v
retrieving revision 1.6
retrieving revision 1.7
diff -u -r1.6 -r1.7
--- libnl-3.2.25.ebuild 27 Dec 2014 19:24:50 -  1.6
+++ libnl-3.2.25.ebuild 10 Jan 2015 20:41:24 -  1.7
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/dev-libs/libnl/libnl-3.2.25.ebuild,v 1.6 
2014/12/27 19:24:50 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-libs/libnl/libnl-3.2.25.ebuild,v 1.7 
2015/01/10 20:41:24 klausman Exp $
 
 EAPI=5
 PYTHON_COMPAT=( python2_{6,7} python3_{2,3,4} )
@@ -16,7 +16,7 @@
 
 LICENSE=LGPL-2.1 utils? ( GPL-2 )
 SLOT=3
-KEYWORDS=~alpha amd64 arm ~arm64 hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh 
~sparc ~x86 ~amd64-linux ~ia64-linux ~x86-linux
+KEYWORDS=alpha amd64 arm ~arm64 hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc 
~x86 ~amd64-linux ~ia64-linux ~x86-linux
 IUSE=static-libs python utils
 
 RDEPEND=python? ( ${PYTHON_DEPS} )






[gentoo-commits] gentoo-x86 commit in media-libs/fontconfig: ChangeLog fontconfig-2.11.1-r2.ebuild

2015-01-10 Thread Tobias Klausmann (klausman)
klausman15/01/10 21:00:08

  Modified: ChangeLog fontconfig-2.11.1-r2.ebuild
  Log:
  Stable on alpha, bug 520010
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
CE5D54E8)

Revision  ChangesPath
1.202media-libs/fontconfig/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/fontconfig/ChangeLog?rev=1.202view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/fontconfig/ChangeLog?rev=1.202content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/fontconfig/ChangeLog?r1=1.201r2=1.202

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/media-libs/fontconfig/ChangeLog,v
retrieving revision 1.201
retrieving revision 1.202
diff -u -r1.201 -r1.202
--- ChangeLog   31 Dec 2014 17:06:09 -  1.201
+++ ChangeLog   10 Jan 2015 21:00:08 -  1.202
@@ -1,6 +1,10 @@
 # ChangeLog for media-libs/fontconfig
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/media-libs/fontconfig/ChangeLog,v 1.201 
2014/12/31 17:06:09 zlogene Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/media-libs/fontconfig/ChangeLog,v 1.202 
2015/01/10 21:00:08 klausman Exp $
+
+  10 Jan 2015; Tobias Klausmann klaus...@gentoo.org
+  fontconfig-2.11.1-r2.ebuild:
+  Stable on alpha, bug 520010
 
   31 Dec 2014; Mikle Kolyada zlog...@gentoo.org fontconfig-2.11.1-r2.ebuild:
   x86 stable wrt bug #520010



1.6  media-libs/fontconfig/fontconfig-2.11.1-r2.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/fontconfig/fontconfig-2.11.1-r2.ebuild?rev=1.6view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/fontconfig/fontconfig-2.11.1-r2.ebuild?rev=1.6content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/media-libs/fontconfig/fontconfig-2.11.1-r2.ebuild?r1=1.5r2=1.6

Index: fontconfig-2.11.1-r2.ebuild
===
RCS file: 
/var/cvsroot/gentoo-x86/media-libs/fontconfig/fontconfig-2.11.1-r2.ebuild,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- fontconfig-2.11.1-r2.ebuild 31 Dec 2014 17:06:09 -  1.5
+++ fontconfig-2.11.1-r2.ebuild 10 Jan 2015 21:00:08 -  1.6
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: 
/var/cvsroot/gentoo-x86/media-libs/fontconfig/fontconfig-2.11.1-r2.ebuild,v 1.5 
2014/12/31 17:06:09 zlogene Exp $
+# $Header: 
/var/cvsroot/gentoo-x86/media-libs/fontconfig/fontconfig-2.11.1-r2.ebuild,v 1.6 
2015/01/10 21:00:08 klausman Exp $
 
 EAPI=5
 AUTOTOOLS_AUTORECONF=yes
@@ -13,7 +13,7 @@
 
 LICENSE=MIT
 SLOT=1.0
-KEYWORDS=~alpha amd64 arm ~arm64 hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 ~sh 
~sparc x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~x64-freebsd ~x86-freebsd 
~x86-interix ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos 
~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris 
~x86-winnt
+KEYWORDS=alpha amd64 arm ~arm64 hppa ~ia64 ~m68k ~mips ~ppc ~ppc64 ~s390 ~sh 
~sparc x86 ~ppc-aix ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~x64-freebsd ~x86-freebsd 
~x86-interix ~amd64-linux ~arm-linux ~x86-linux ~ppc-macos ~x64-macos 
~x86-macos ~m68k-mint ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris 
~x86-winnt
 IUSE=doc static-libs
 
 # Purposefully dropped the xml USE flag and libxml2 support.  Expat is the






[gentoo-commits] dev/bircoph:master commit in: sci-visualization/opendx/

2015-01-10 Thread Andrew Savchenko
commit: dd7f26ea26f15bd0ffe10f76af3d584ebfee3442
Author: Andrew Savchenko bircoph AT gmail DOT com
AuthorDate: Sat Jan 10 21:02:45 2015 +
Commit: Andrew Savchenko bircoph AT gmail DOT com
CommitDate: Sat Jan 10 21:02:45 2015 +
URL:
http://sources.gentoo.org/gitweb/?p=dev/bircoph.git;a=commit;h=dd7f26ea

opendx: drop broken graphicsmagick support

See bug 458690.

---
 sci-visualization/opendx/Manifest  | 2 +-
 .../opendx/{opendx-4.4.4-r4.ebuild = opendx-4.4.4-r5.ebuild}  | 7 +++
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/sci-visualization/opendx/Manifest 
b/sci-visualization/opendx/Manifest
index 77690e6..969aff2 100644
--- a/sci-visualization/opendx/Manifest
+++ b/sci-visualization/opendx/Manifest
@@ -10,6 +10,6 @@ AUX opendx-4.4.4-open.patch 1671 SHA256 
0b0cbc06ecc8e44d32f16000c6ee2c09b70b7cfb
 AUX opendx-4.4.4-szip.patch 1482 SHA256 
c330e0fc642d4f5004fd3173532e2f7223499dc612be298a53b41f423b021a23 SHA512 
2805e914729d06e50fc3c4a5f05bba77f4f26fd3419e1439fc0ae0d16805cfa7934ede9a3af47cad4cb571f9d3ebd0087d9d9bfb91615d51f31647131ff75b9e
 WHIRLPOOL 
86d2f930baacf5ab68400fb7ebc170b9af9005e3e061bb2f06fe44b11ffefd4d6cdd2fd025f19b48af3c7e61de306fe321c832a396c894363f3146a9721847d9
 AUX opendx-4.4.4-xdg.patch 785 SHA256 
93e50b0da16f3d28c016fa95ee49530322e83f8527b45abd7415bb14365600c1 SHA512 
8aa9dd05fa2d6fe90b85db8b0676cecb0c1836bd229b4c8f5527eff9c23749c1ba8eafdd9baba16bb97ce5d6acfbac41a70ac4dc896b88cfad95c771d793
 WHIRLPOOL 
43b906145f324230d8255a746a66ebf4c99aef9df65325f857d302f5161f13fd983a3af4a8e05977e2f9e139fe80946801a533ae145384f772163431cb28
 DIST dx-4.4.4.tar.gz 9676049 SHA256 
a9915e17d49c5499edd3df69ffeac0b7ba24f8b38ddf7509712b48eb3c21f1ff SHA512 
e6ef0075a696c442fd4615eb32b9ebd3f85728321a33297e3402b19bbc6210953a6599d643fc0a20bc349fbc72411326c69187223ee0e65560603d8e6f7527ee
 WHIRLPOOL 
6d6931fabfb054ff06464649b2b2ce5f094aa6d0c28f0f2e6ee22176ef4749d78f102ed9d0c27cf3c84ea10038d4502d908ec7a95a597d32f21574b277a54fa0
-EBUILD opendx-4.4.4-r4.ebuild 2094 SHA256 
1c8adf258f0d2dbad51f600cdc56fae8df8348f68adac5c56f72fd74ab4f6620 SHA512 
4b17de1bad0a4c906c090c225f64bf6ee2fe012115aa9c44294f81ee595092776c0c5bb5f3c9de1b9cd8b3d1df35f364a36b27929c9a94b0cad5a1f8f3221976
 WHIRLPOOL 
fb81c2c09ca7eba72e947ae86c0ea7ddcba7e10feaa11eda13b60f6c03401be69433f453817b81d4d191a9c303ab3face0c07d7a7c6a782bad883120c744f3c0
+EBUILD opendx-4.4.4-r5.ebuild 2057 SHA256 
d11a16e141cec04c324abbc302d76030fbd00c6b0331b9e5fced145fed546ccd SHA512 
fa803d3f66fc6e91b8eafb5210332ca79ac451bfd29e8c0e9a87f3db47d325b8165357845366230b3af609db1d0411eb31132609f0346e2aa41b70d78bc4c0e4
 WHIRLPOOL 
efa07eab4df6d09af508251b593db89cce79a1e1bef9eff718af825526f43cd7eb2728c921e282933f537c6b191cc92a0e52048639c7fce649adac5d52ea7d6d
 MISC ChangeLog 9116 SHA256 
f0340560cc604a61a86d491675f539c7c40c4823943a41c79a4358a2b299464e SHA512 
0def7641a3476dcb5362fdbd5e2b407d16aa61d120f1cac54fc02e02543a16594a213bc8c6298aa7deb125de75ae6c97e12bda3ed1e4491b2fef15dab8716177
 WHIRLPOOL 
792613904ac7ad08f392f874667eebdb47d46e00c51b033dfa3c8ba8faf8fa9470a79fbd0402af5fbaa95f1d48883019ad538244f93e94d1b58ab02635694d0b
 MISC metadata.xml 944 SHA256 
c5b382e449be53cd96ad290e8ef5085368b4c6f49f81b23dd6c9f899114bc972 SHA512 
43133bc016658001ce1e520b7e1eed7cce39860a8a2e6d70a28f6975de93207c9ef2cf1af359b4aaacdb1fe4f7499e1a062a19d229f4ad0930c6f378a0d28307
 WHIRLPOOL 
6551af1bef56c6d76708959ae99d60394f9b9c6a096a154210f52d315da9ec059a2f6246aef039e9f57e6cfab709b1e5f9eb7440d87e4639f4bbd5e6e4f2fa2a

diff --git a/sci-visualization/opendx/opendx-4.4.4-r4.ebuild 
b/sci-visualization/opendx/opendx-4.4.4-r5.ebuild
similarity index 93%
rename from sci-visualization/opendx/opendx-4.4.4-r4.ebuild
rename to sci-visualization/opendx/opendx-4.4.4-r5.ebuild
index 3a05308..042e01f 100644
--- a/sci-visualization/opendx/opendx-4.4.4-r4.ebuild
+++ b/sci-visualization/opendx/opendx-4.4.4-r5.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2012 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: 
/var/cvsroot/gentoo-x86/sci-visualization/opendx/opendx-4.4.4-r4.ebuild,v 1.11 
2012/10/24 19:45:23 ulm Exp $
 
-EAPI=4
+EAPI=5
 
 MYP=dx-${PV}
 inherit eutils flag-o-matic autotools multilib
@@ -13,7 +13,7 @@ SRC_URI=http://opendx.sdsc.edu/source/${MYP}.tar.gz;
 
 LICENSE=IBM
 SLOT=0
-KEYWORDS=amd64 ppc x86 ~amd64-linux ~x86-linux
+KEYWORDS=~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux
 IUSE=hdf cdf netcdf tiff imagemagick szip smp
 
 RDEPEND=x11-libs/libXmu
@@ -46,7 +46,6 @@ src_prepare() {
epatch ${FILESDIR}/${P}-open.patch
epatch ${FILESDIR}/${P}-szip.patch
epatch ${FILESDIR}/${P}-null.patch
-   epatch ${FILESDIR}/${P}-magick.patch
eautoreconf
 }
 



[gentoo-commits] gentoo-x86 commit in net-misc/dhcpcd: ChangeLog dhcpcd-6.4.7.ebuild

2015-01-10 Thread Tobias Klausmann (klausman)
klausman15/01/10 21:06:54

  Modified: ChangeLog dhcpcd-6.4.7.ebuild
  Log:
  Stable on alpha, bug 523900
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
CE5D54E8)

Revision  ChangesPath
1.441net-misc/dhcpcd/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/dhcpcd/ChangeLog?rev=1.441view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/dhcpcd/ChangeLog?rev=1.441content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/dhcpcd/ChangeLog?r1=1.440r2=1.441

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/net-misc/dhcpcd/ChangeLog,v
retrieving revision 1.440
retrieving revision 1.441
diff -u -r1.440 -r1.441
--- ChangeLog   6 Jan 2015 00:01:57 -   1.440
+++ ChangeLog   10 Jan 2015 21:06:54 -  1.441
@@ -1,6 +1,9 @@
 # ChangeLog for net-misc/dhcpcd
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/net-misc/dhcpcd/ChangeLog,v 1.440 
2015/01/06 00:01:57 williamh Exp $
+# $Header: /var/cvsroot/gentoo-x86/net-misc/dhcpcd/ChangeLog,v 1.441 
2015/01/10 21:06:54 klausman Exp $
+
+  10 Jan 2015; Tobias Klausmann klaus...@gentoo.org dhcpcd-6.4.7.ebuild:
+  Stable on alpha, bug 523900
 
 *dhcpcd-6.6.7 (06 Jan 2015)
 



1.8  net-misc/dhcpcd/dhcpcd-6.4.7.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/dhcpcd/dhcpcd-6.4.7.ebuild?rev=1.8view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/dhcpcd/dhcpcd-6.4.7.ebuild?rev=1.8content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/net-misc/dhcpcd/dhcpcd-6.4.7.ebuild?r1=1.7r2=1.8

Index: dhcpcd-6.4.7.ebuild
===
RCS file: /var/cvsroot/gentoo-x86/net-misc/dhcpcd/dhcpcd-6.4.7.ebuild,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- dhcpcd-6.4.7.ebuild 10 Oct 2014 20:11:25 -  1.7
+++ dhcpcd-6.4.7.ebuild 10 Jan 2015 21:06:54 -  1.8
@@ -1,6 +1,6 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/net-misc/dhcpcd/dhcpcd-6.4.7.ebuild,v 1.7 
2014/10/10 20:11:25 maekke Exp $
+# $Header: /var/cvsroot/gentoo-x86/net-misc/dhcpcd/dhcpcd-6.4.7.ebuild,v 1.8 
2015/01/10 21:06:54 klausman Exp $
 
 EAPI=5
 
@@ -11,7 +11,7 @@
MY_P=${MY_P/_beta/-beta}
MY_P=${MY_P/_rc/-rc}
SRC_URI=http://roy.marples.name/downloads/${PN}/${MY_P}.tar.bz2;
-   KEYWORDS=~alpha amd64 arm ~arm64 hppa ~ia64 ~mips ppc ppc64 ~s390 ~sh 
~sparc x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux
+   KEYWORDS=alpha amd64 arm ~arm64 hppa ~ia64 ~mips ppc ppc64 ~s390 ~sh 
~sparc x86 ~amd64-fbsd ~sparc-fbsd ~x86-fbsd ~amd64-linux ~arm-linux ~x86-linux
S=${WORKDIR}/${MY_P}
 fi
 






[gentoo-commits] gentoo-x86 commit in profiles: ChangeLog package.mask

2015-01-10 Thread Sergey Popov (pinkbyte)
pinkbyte15/01/10 21:32:26

  Modified: ChangeLog package.mask
  Log:
  Mask net-dialup/gtk-imonc for removal

Revision  ChangesPath
1.9678   profiles/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?rev=1.9678view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?rev=1.9678content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/ChangeLog?r1=1.9677r2=1.9678

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v
retrieving revision 1.9677
retrieving revision 1.9678
diff -u -r1.9677 -r1.9678
--- ChangeLog   10 Jan 2015 14:50:39 -  1.9677
+++ ChangeLog   10 Jan 2015 21:32:26 -  1.9678
@@ -1,11 +1,14 @@
 # ChangeLog for profile directory
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v 1.9677 2015/01/10 
14:50:39 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/ChangeLog,v 1.9678 2015/01/10 
21:32:26 pinkbyte Exp $
 #
 # This ChangeLog should include records for all changes in profiles directory.
 # Only typo fixes which don't affect portage/repoman behaviour could be avoided
 # here. If in doubt put a record here!
 
+  10 Jan 2015; Sergey Popov pinkb...@gentoo.org package.mask:
+  Mask net-dialup/gtk-imonc for removal
+
   10 Jan 2015; Pacho Ramos pa...@gentoo.org arch/alpha/package.use.mask,
   arch/ia64/package.use.mask, arch/sparc/package.use.mask:
   Update use.masks



1.16282  profiles/package.mask

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16282view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?rev=1.16282content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/profiles/package.mask?r1=1.16281r2=1.16282

Index: package.mask
===
RCS file: /var/cvsroot/gentoo-x86/profiles/package.mask,v
retrieving revision 1.16281
retrieving revision 1.16282
diff -u -r1.16281 -r1.16282
--- package.mask10 Jan 2015 13:44:28 -  1.16281
+++ package.mask10 Jan 2015 21:32:26 -  1.16282
@@ -1,5 +1,5 @@
 
-# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16281 2015/01/10 
13:44:28 chithanh Exp $
+# $Header: /var/cvsroot/gentoo-x86/profiles/package.mask,v 1.16282 2015/01/10 
21:32:26 pinkbyte Exp $
 #
 # When you add an entry to the top of this file, add your name, the date, and
 # an explanation of why something is getting masked. Please be extremely
@@ -30,6 +30,12 @@
 
 #--- END OF EXAMPLES ---
 
+# Sergey Popov pinkb...@gentoo.org (11 Jan 2015)
+# Upstream support is discontinued(last release in 2005)
+# Has some opened bugs - #369653, #448958
+# Removal in 30 days
+net-dialup/gtk-imonc
+
 # Chí-Thanh Christopher Nguyễn chith...@gentoo.org (10 Jan 2015)
 # obsolete and vulnerable, bug #532086
 # removal in 30 days






[gentoo-commits] gentoo-x86 commit in dev-ruby/minitest: minitest-5.5.1.ebuild ChangeLog

2015-01-10 Thread Manuel Rueger (mrueg)
mrueg   15/01/10 21:55:37

  Modified: ChangeLog
  Added:minitest-5.5.1.ebuild
  Log:
  Version bump.
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key )

Revision  ChangesPath
1.177dev-ruby/minitest/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/minitest/ChangeLog?rev=1.177view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/minitest/ChangeLog?rev=1.177content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/minitest/ChangeLog?r1=1.176r2=1.177

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-ruby/minitest/ChangeLog,v
retrieving revision 1.176
retrieving revision 1.177
diff -u -r1.176 -r1.177
--- ChangeLog   27 Dec 2014 21:04:35 -  1.176
+++ ChangeLog   10 Jan 2015 21:55:37 -  1.177
@@ -1,6 +1,11 @@
 # ChangeLog for dev-ruby/minitest
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-ruby/minitest/ChangeLog,v 1.176 
2014/12/27 21:04:35 graaff Exp $
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/dev-ruby/minitest/ChangeLog,v 1.177 
2015/01/10 21:55:37 mrueg Exp $
+
+*minitest-5.5.1 (10 Jan 2015)
+
+  10 Jan 2015; Manuel Rüger mr...@gentoo.org +minitest-5.5.1.ebuild:
+  Version bump.
 
   27 Dec 2014; Hans de Graaff gra...@gentoo.org minitest-4.7.5-r1.ebuild,
   minitest-5.4.3.ebuild, minitest-5.5.0.ebuild:



1.1  dev-ruby/minitest/minitest-5.5.1.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/minitest/minitest-5.5.1.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-ruby/minitest/minitest-5.5.1.ebuild?rev=1.1content-type=text/plain

Index: minitest-5.5.1.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/dev-ruby/minitest/minitest-5.5.1.ebuild,v 
1.1 2015/01/10 21:55:37 mrueg Exp $

EAPI=5
USE_RUBY=ruby19 ruby20 ruby21 ruby22

RUBY_FAKEGEM_RECIPE_DOC=rdoc

RUBY_FAKEGEM_DOCDIR=doc
RUBY_FAKEGEM_EXTRADOC=History.txt Manifest.txt README.txt

inherit ruby-fakegem

DESCRIPTION=minitest/unit is a small and fast replacement for ruby's huge and 
slow test/unit
HOMEPAGE=https://github.com/seattlerb/minitest;

LICENSE=MIT
SLOT=5
KEYWORDS=~alpha ~amd64 ~arm ~hppa ~ia64 ~mips ~ppc ~ppc64 ~s390 ~sh ~sparc 
~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux ~x86-linux ~ppc-macos ~x64-macos 
~x86-macos ~sparc-solaris ~sparc64-solaris ~x64-solaris ~x86-solaris
IUSE=doc test

each_ruby_prepare() {
case ${RUBY} in
*rbx)
# Avoid a single failing test for rbx while we are 
testing
# and bootstrapping it.
sed -i -e '/test_mock_args_does_not_raise/,/^  end/ 
s:^:#:' test/minitest/test_minitest_mock.rb || die
;;
*)
;;
esac
}

each_ruby_test() {
${RUBY} -Ilib:test:. -e Dir['**/test_*.rb'].each{|f| require f} || 
die Tests failed
}






[gentoo-commits] gentoo-x86 commit in dev-python/lockfile: lockfile-0.10.2.ebuild ChangeLog

2015-01-10 Thread Dirkjan Ochtman (djc)
djc 15/01/10 17:54:59

  Modified: ChangeLog
  Added:lockfile-0.10.2.ebuild
  Log:
  Version bump lockfile to 0.10.2 (drop sparc and pypy for pbr dep)
  
  (Portage version: 2.2.15/cvs/Linux x86_64, signed Manifest commit with key 
30380381)

Revision  ChangesPath
1.26 dev-python/lockfile/ChangeLog

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/lockfile/ChangeLog?rev=1.26view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/lockfile/ChangeLog?rev=1.26content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/lockfile/ChangeLog?r1=1.25r2=1.26

Index: ChangeLog
===
RCS file: /var/cvsroot/gentoo-x86/dev-python/lockfile/ChangeLog,v
retrieving revision 1.25
retrieving revision 1.26
diff -u -r1.25 -r1.26
--- ChangeLog   10 Jan 2015 17:42:27 -  1.25
+++ ChangeLog   10 Jan 2015 17:54:59 -  1.26
@@ -1,6 +1,11 @@
 # ChangeLog for dev-python/lockfile
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/dev-python/lockfile/ChangeLog,v 1.25 
2015/01/10 17:42:27 djc Exp $
+# $Header: /var/cvsroot/gentoo-x86/dev-python/lockfile/ChangeLog,v 1.26 
2015/01/10 17:54:59 djc Exp $
+
+*lockfile-0.10.2 (10 Jan 2015)
+
+  10 Jan 2015; Dirkjan Ochtman d...@gentoo.org +lockfile-0.10.2.ebuild:
+  Version bump lockfile to 0.10.2 (drop sparc and pypy for pbr dep)
 
   10 Jan 2015; Dirkjan Ochtman d...@gentoo.org -lockfile-0.8-r1.ebuild,
   -lockfile-0.8.ebuild, -lockfile-0.9.1.ebuild:



1.1  dev-python/lockfile/lockfile-0.10.2.ebuild

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/lockfile/lockfile-0.10.2.ebuild?rev=1.1view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-python/lockfile/lockfile-0.10.2.ebuild?rev=1.1content-type=text/plain

Index: lockfile-0.10.2.ebuild
===
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/dev-python/lockfile/lockfile-0.10.2.ebuild,v 
1.1 2015/01/10 17:54:59 djc Exp $

EAPI=5
PYTHON_COMPAT=( python{2_7,3_3,3_4} )

inherit distutils-r1

DESCRIPTION=Platform-independent file locking module
HOMEPAGE=http://launchpad.net/pylockfile http://pypi.python.org/pypi/lockfile;
SRC_URI=mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz

LICENSE=MIT
SLOT=0
KEYWORDS=~amd64 ~arm ~ppc ~x86
IUSE=doc test

DEPEND=dev-python/pbr[${PYTHON_USEDEP}]
doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
test? ( dev-python/nose[${PYTHON_USEDEP}] )
RDEPEND=

DOCS=( ACKS README RELEASE-NOTES )

python_compile_all() {
if use doc; then
einfo Generation of documentation
emake -C doc html || die Generation of documentation failed
fi
}

python_test() {
# ${PYTHON} test/test_lockfile.py yeilds no informative coverage 
output
nosetests || die test_lockfile failed under ${EPYTHON}
}

python_install_all() {
use doc  local HTML_DOCS=( doc/.build/html/. )
distutils-r1_python_install_all
}






[gentoo-commits] gentoo commit in xml/htdocs/proj/en/qa/treecleaners: maintainer-needed.xml

2015-01-10 Thread Markos Chandras (hwoarang)
hwoarang15/01/10 17:52:53

  Modified: maintainer-needed.xml
  Log:
  Automated update of maintainer-needed package list

Revision  ChangesPath
1.468xml/htdocs/proj/en/qa/treecleaners/maintainer-needed.xml

file : 
http://sources.gentoo.org/viewvc.cgi/gentoo/xml/htdocs/proj/en/qa/treecleaners/maintainer-needed.xml?rev=1.468view=markup
plain: 
http://sources.gentoo.org/viewvc.cgi/gentoo/xml/htdocs/proj/en/qa/treecleaners/maintainer-needed.xml?rev=1.468content-type=text/plain
diff : 
http://sources.gentoo.org/viewvc.cgi/gentoo/xml/htdocs/proj/en/qa/treecleaners/maintainer-needed.xml?r1=1.467r2=1.468

Index: maintainer-needed.xml
===
RCS file: 
/var/cvsroot/gentoo/xml/htdocs/proj/en/qa/treecleaners/maintainer-needed.xml,v
retrieving revision 1.467
retrieving revision 1.468
diff -u -r1.467 -r1.468
--- maintainer-needed.xml   8 Jan 2015 19:43:16 -   1.467
+++ maintainer-needed.xml   10 Jan 2015 17:52:53 -  1.468
@@ -1,6 +1,6 @@
 ?xml version=1.0 encoding=UTF-8?
 !DOCTYPE guide SYSTEM /dtd/guide.dtd
-!-- $Header: 
/var/cvsroot/gentoo/xml/htdocs/proj/en/qa/treecleaners/maintainer-needed.xml,v 
1.467 2015/01/08 19:43:16 hwoarang Exp $ --
+!-- $Header: 
/var/cvsroot/gentoo/xml/htdocs/proj/en/qa/treecleaners/maintainer-needed.xml,v 
1.468 2015/01/10 17:52:53 hwoarang Exp $ --
 
 
 
@@ -23,7 +23,7 @@
   license/
 
   version1.2/version
-  date2015-01-08/date
+  date2015-01-10/date
   chapter
   titleMaintainer-Needed packages/title
   section
@@ -38,7 +38,7 @@
 section
 titlePackage List/title
 body
-pThe following 1227 packages are marked as maintainer-needed
+pThe following 1226 packages are marked as maintainer-needed
 /p
 table
 trthPackage Name/ththDescription/ththBugs/th/tr
@@ -2763,9 +2763,6 @@
 trtiuri 
link=http://packages.gentoo.org/package/net-proxy/dansguardian;net-proxy/dansguardian/uri/ti
 tiWeb content filtering via proxy/ti
 tiuri 
link=https://bugs.gentoo.org/buglist.cgi?quicksearch=net-proxy/dansguardian;Open
 Bugs/uri/ti/tr
-trtiuri 
link=http://packages.gentoo.org/package/net-proxy/dante;net-proxy/dante/uri/ti
-tiA free socks4,5 and msproxy implementation/ti
-tiuri 
link=https://bugs.gentoo.org/buglist.cgi?quicksearch=net-proxy/dante;Open 
Bugs/uri/ti/tr
 trtiuri 
link=http://packages.gentoo.org/package/net-proxy/dnsproxy;net-proxy/dnsproxy/uri/ti
 tiThe dnsproxy daemon is a proxy for DNS queries/ti
 tiuri 
link=https://bugs.gentoo.org/buglist.cgi?quicksearch=net-proxy/dnsproxy;Open 
Bugs/uri/ti/tr






[gentoo-commits] proj/sci:master commit in: sci-libs/arrayfire/files/

2015-01-10 Thread Justin Lecher
commit: 5c113d13d74318d8c9718deff1e831b8143da0ca
Author: Marius Brehler marbre AT linux DOT sungazer DOT de
AuthorDate: Sat Jan 10 11:48:06 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 11:48:06 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=5c113d13

Add patch to install examples

---
 sci-libs/arrayfire/files/CMakeLists_examples.patch | 11 +++
 1 file changed, 11 insertions(+)

diff --git a/sci-libs/arrayfire/files/CMakeLists_examples.patch 
b/sci-libs/arrayfire/files/CMakeLists_examples.patch
new file mode 100644
index 000..45139f8
--- /dev/null
+++ b/sci-libs/arrayfire/files/CMakeLists_examples.patch
@@ -0,0 +1,11 @@
+--- b/examples/CMakeLists.txt  2015-01-10 12:39:23.0 +0100
 a/examples/CMakeLists.txt  2015-01-10 12:40:10.0 +0100
+@@ -13,7 +13,7 @@ MACRO(CREATE_EXAMPLES BACKEND)
+ TARGET_LINK_LIBRARIES(${EXAMPLE_NAME} af${BACKEND} ${THREAD_LIB_FLAG})
+ SET_TARGET_PROPERTIES(${EXAMPLE_NAME} PROPERTIES COMPILE_FLAGS 
-DAF_${DEF_NAME} OUTPUT_NAME ${FNAME}_${BACKEND})
+ 
+-#INSTALL(TARGETS ${EXAMPLE_NAME} DESTINATION arrayfire/examples)
++INSTALL(TARGETS ${EXAMPLE_NAME} DESTINATION share/arrayfire/examples)
+  ENDFOREACH()
+ ENDMACRO(CREATE_EXAMPLES)
+ 



[gentoo-commits] proj/sci:master commit in: sci-libs/arrayfire/

2015-01-10 Thread Justin Lecher
commit: 969d55c75afbca055209bf22fd46f0b2ff8c7dd3
Author: Marius Brehler marbre AT linux DOT sungazer DOT de
AuthorDate: Sat Jan 10 15:21:02 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 15:21:02 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=969d55c7

Further cleanup

---
 sci-libs/arrayfire/arrayfire-.ebuild | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/sci-libs/arrayfire/arrayfire-.ebuild 
b/sci-libs/arrayfire/arrayfire-.ebuild
index b2d1099..0022657 100644
--- a/sci-libs/arrayfire/arrayfire-.ebuild
+++ b/sci-libs/arrayfire/arrayfire-.ebuild
@@ -4,7 +4,7 @@
 
 EAPI=5
 
-inherit cmake-utils eutils git-r3
+inherit cmake-utils git-r3
 
 DESCRIPTION=A general purpose GPU library.
 HOMEPAGE=http://www.arrayfire.com/;
@@ -24,8 +24,6 @@ RDEPEND=
 DEPEND=${RDEPEND}
test? ( dev-vcs/subversion )
 
-S=${WORKDIR}/${P}
-BUILD_DIR=${S}/build
 CMAKE_BUILD_TYPE=Release
 
 src_prepare() {



[gentoo-commits] proj/sci:master commit in: sci-biology/merlin/

2015-01-10 Thread Justin Lecher
commit: 3dda4223938da985600b21f8a5d30414f181ba08
Author: Marius Brehler marbre AT linux DOT sungazer DOT de
AuthorDate: Sat Jan 10 15:46:14 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 15:46:14 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3dda4223

sci-biology/merlin: Move to EAPI=5

---
 sci-biology/merlin/ChangeLog   | 6 +-
 sci-biology/merlin/merlin-1.1.2.ebuild | 4 ++--
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/sci-biology/merlin/ChangeLog b/sci-biology/merlin/ChangeLog
index 08b262e..9f340ed 100644
--- a/sci-biology/merlin/ChangeLog
+++ b/sci-biology/merlin/ChangeLog
@@ -1,7 +1,11 @@
 # ChangeLog for sci-biology/merlin
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  10 Jan 2015; Marius Brehler mar...@linux.sungazer.de
+  merlin-1.1.2.ebuild:
+  Move to EAPI=5.
+
   21 Apr 2009; Andrey Kislyuk wea...@gentoo.org ChangeLog:
   New package, bug 121921, thanks to Neil nsheph...@gmail.com
 

diff --git a/sci-biology/merlin/merlin-1.1.2.ebuild 
b/sci-biology/merlin/merlin-1.1.2.ebuild
index 759154d..90363b5 100644
--- a/sci-biology/merlin/merlin-1.1.2.ebuild
+++ b/sci-biology/merlin/merlin-1.1.2.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
-EAPI=2
+EAPI=5
 
 inherit toolchain-funcs
 



[gentoo-commits] proj/sci:master commit in: licenses/, sci-libs/arrayfire/files/, sci-libs/arrayfire/

2015-01-10 Thread Justin Lecher
commit: 2ff76f8d81a107b07bb43fd653d73bf549aae016
Author: Marius Brehler marbre AT linux DOT sungazer DOT de
AuthorDate: Fri Jan  9 17:32:31 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Fri Jan  9 17:32:31 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=2ff76f8d

New package arrayfire

---
 licenses/ArrayFire   | 27 +
 sci-libs/arrayfire/arrayfire-.ebuild | 96 
 sci-libs/arrayfire/files/FindCBLAS.patch | 48 
 sci-libs/arrayfire/metadata.xml  | 17 ++
 4 files changed, 188 insertions(+)

diff --git a/licenses/ArrayFire b/licenses/ArrayFire
new file mode 100644
index 000..3aae2e6
--- /dev/null
+++ b/licenses/ArrayFire
@@ -0,0 +1,27 @@
+Copyright (c) 2014, ArrayFire
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without 
modification,
+are permitted provided that the following conditions are met:
+
+* Redistributions of source code must retain the above copyright notice, this
+  list of conditions and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright notice, 
this
+  list of conditions and the following disclaimer in the documentation and/or
+  other materials provided with the distribution.
+
+* Neither the name of the ArrayFire nor the names of its
+  contributors may be used to endorse or promote products derived from
+  this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS AS IS AND
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE 
FOR
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

diff --git a/sci-libs/arrayfire/arrayfire-.ebuild 
b/sci-libs/arrayfire/arrayfire-.ebuild
new file mode 100644
index 000..06295ca
--- /dev/null
+++ b/sci-libs/arrayfire/arrayfire-.ebuild
@@ -0,0 +1,96 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit cmake-utils eutils git-r3 toolchain-funcs
+
+DESCRIPTION=A general purpose GPU library.
+HOMEPAGE=http://www.arrayfire.com/;
+EGIT_REPO_URI=https://github.com/arrayfire/arrayfire.git;
+KEYWORDS=~amd64
+
+LICENSE=ArrayFire
+SLOT=0
+IUSE=+examples +cpu cuda
+
+RDEPEND=
+   =sys-devel/gcc-4.7.3-r1
+   virtual/blas
+   virtual/cblas
+   cuda? ( =dev-util/nvidia-cuda-toolkit-6.0 )
+   sci-libs/fftw:3.0
+DEPEND=${RDEPEND}
+
+# We need write acccess /dev/nvidiactl, /dev/nvidia0 and /dev/nvidia-uvm and 
the portage
+# user is (usually) not in the video group
+if use cuda; then
+   RESTRICT=userpriv
+fi
+
+S=${WORKDIR}/${P}
+
+QA_PREBUILT=/usr/share/arrayfire/examples/helloworld_cpu
+   /usr/share/arrayfire/examples/pi_cpu
+   /usr/share/arrayfire/examples/vectorize_cpu
+   /usr/share/arrayfire/examples/helloworld_cuda
+   /usr/share/arrayfire/examples/pi_cuda
+   /usr/share/arrayfire/examples/vectorize_cuda
+
+src_unpack() {
+   git-r3_src_unpack
+}
+
+src_prepare() {
+   if use cpu; then
+   epatch ${FILESDIR}/FindCBLAS.patch
+   fi
+   cmake-utils_src_prepare
+}
+
+src_configure() {
+   if use cuda; then
+   addwrite /dev/nvidiactl
+   addwrite /dev/nvidia0
+   addwrite /dev/nvidia-uvm
+   fi
+
+   local mycmakeargs=
+   -DCMAKE_BUILD_TYPE=Release
+   $(cmake-utils_use_build cpu CPU)
+   $(cmake-utils_use_build cuda CUDA)
+   -DBUILD_OPENCL=OFF
+   $(cmake-utils_use_build examples EXAMPLES)
+   -DBUILD_TEST=OFF
+   
+
+   BUILD_DIR=${S}/build cmake-utils_src_configure
+}
+
+src_compile() {
+   BUILD_DIR=${S}/build cmake-utils_src_compile
+}
+
+src_install() {
+   cmake-utils_src_install
+
+   exeinto /usr/bin
+   doexe build/bin2cpp
+
+   if use examples; then
+   ebegin Installing examples
+   exeinto /usr/share/arrayfire/examples/
+   if use cpu; then
+   doexe build/examples/helloworld_cpu
+   doexe build/examples/pi_cpu
+   doexe build/examples/vectorize_cpu
+   fi
+   if use cuda; then
+   doexe 

[gentoo-commits] proj/sci:master commit in: /

2015-01-10 Thread Justin Lecher
commit: 6f1ee4089713b543429069af689749d5943707b3
Author: Justin jlec AT gentoo DOT org
AuthorDate: Sat Jan 10 15:15:21 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 15:15:21 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6f1ee408

Merge pull request #316 from marbre/jeuclid-core

dev-java/jeuclid-core: Move to EAPI=5


 dev-java/jeuclid-core/ChangeLog| 6 +-
 dev-java/jeuclid-core/jeuclid-core-3.1.8.ebuild| 4 ++--
 dev-java/jeuclid-core/jeuclid-core-3.1.9-r1.ebuild | 4 ++--
 3 files changed, 9 insertions(+), 5 deletions(-)



[gentoo-commits] proj/sci:master commit in: sci-libs/arrayfire/

2015-01-10 Thread Justin Lecher
commit: 3df97cfe69a14f7fa03593c92e2675dd959d0346
Author: Marius Brehler marbre AT linux DOT sungazer DOT de
AuthorDate: Sat Jan 10 12:11:20 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 12:11:20 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=3df97cfe

Add ChangeLog

---
 sci-libs/arrayfire/ChangeLog | 10 ++
 1 file changed, 10 insertions(+)

diff --git a/sci-libs/arrayfire/ChangeLog b/sci-libs/arrayfire/ChangeLog
new file mode 100644
index 000..c21468a
--- /dev/null
+++ b/sci-libs/arrayfire/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sys-cluster/mpe2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*arrayfire- (10 Jan 2015)
+
+  10 Jan 2015; Marius Brehler mar...@linux.sungazer.de +metadata.xml,
+  +files/FindCBLAS.patch, +files/CMakeLists_examples.patch,
+  +arrayfire-.ebuild:
+  Add to overlay.



[gentoo-commits] proj/sci:master commit in: sci-libs/arrayfire/

2015-01-10 Thread Justin Lecher
commit: a4a5080edd63b80e21729d084234be9a1d3f5873
Author: Marius Brehler marbre AT linux DOT sungazer DOT de
AuthorDate: Sat Jan 10 15:19:30 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 15:19:30 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=a4a5080e

Drop userpriv; Add independent USE flag

---
 sci-libs/arrayfire/arrayfire-.ebuild | 8 +---
 1 file changed, 1 insertion(+), 7 deletions(-)

diff --git a/sci-libs/arrayfire/arrayfire-.ebuild 
b/sci-libs/arrayfire/arrayfire-.ebuild
index 0a24116..b2d1099 100644
--- a/sci-libs/arrayfire/arrayfire-.ebuild
+++ b/sci-libs/arrayfire/arrayfire-.ebuild
@@ -13,7 +13,7 @@ KEYWORDS=~amd64
 
 LICENSE=ArrayFire
 SLOT=0
-IUSE=+examples +cpu cuda test
+IUSE=+examples +cpu cuda independent test
 
 RDEPEND=
=sys-devel/gcc-4.7.3-r1
@@ -28,12 +28,6 @@ S=${WORKDIR}/${P}
 BUILD_DIR=${S}/build
 CMAKE_BUILD_TYPE=Release
 
-# We need write acccess /dev/nvidiactl, /dev/nvidia0 and /dev/nvidia-uvm and 
the portage
-# user is (usually) not in the video group
-if use cuda; then
-   RESTRICT=userpriv
-fi
-
 src_prepare() {
if use cpu; then
epatch ${FILESDIR}/FindCBLAS.patch



[gentoo-commits] proj/sci:master commit in: sci-libs/arrayfire/

2015-01-10 Thread Justin Lecher
commit: 84f3d219fb5cb7d15f5c4758f3dbdd41fb85c233
Author: Marius Brehler marbre AT linux DOT sungazer DOT de
AuthorDate: Sat Jan 10 17:45:02 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Sat Jan 10 17:45:02 2015 +
URL:http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=84f3d219

Add pkg_pretend + further fixes

---
 sci-libs/arrayfire/arrayfire-.ebuild | 18 +++---
 1 file changed, 15 insertions(+), 3 deletions(-)

diff --git a/sci-libs/arrayfire/arrayfire-.ebuild 
b/sci-libs/arrayfire/arrayfire-.ebuild
index dbdca1f..a1af26b 100644
--- a/sci-libs/arrayfire/arrayfire-.ebuild
+++ b/sci-libs/arrayfire/arrayfire-.ebuild
@@ -14,7 +14,7 @@ KEYWORDS=~amd64
 
 LICENSE=BSD
 SLOT=0
-IUSE=+examples +cpu cuda independent test
+IUSE=+examples +cpu cuda test
 
 RDEPEND=
=sys-devel/gcc-4.7.3-r1
@@ -31,11 +31,23 @@ CMAKE_BUILD_TYPE=Release
 PATCHES=(
${FILESDIR}/FindCBLAS.patch
${FILESDIR}/CMakeLists_examples.patch
-${FILESDIR}/build_gtest.patch
+   ${FILESDIR}/build_gtest.patch
 )
 
+# We need write acccess /dev/nvidiactl, /dev/nvidia0 and /dev/nvidia-uvm and 
the portage
+# user is (usually) not in the video group
+RESTRICT=userpriv
+
+pkg_pretend() {
+   if [[ ${MERGE_TYPE} != binary ]]; then
+   if [[ $(gcc-major-version) -lt 4 ]] || ( [[ 
$(gcc-major-version) -eq 4  $(gcc-minor-version) -lt 7 ]] ) ; then
+   die Compilation with gcc older than 4.7 is not 
supported.
+   fi
+   fi
+}
+
 src_unpack() {
-git-r3_src_unpack
+   git-r3_src_unpack
 
if use test; then
mkdir -p ${BUILD_DIR}/third_party/src/ || die



  1   2   >