[gentoo-commits] proj/sci:master commit in: sci-biology/snpomatic/
commit: b107d0c2dfee190bea691828c7f474bbeaee4109
Author: Andrew Ammerlaan riseup net>
AuthorDate: Sat Mar 20 11:01:12 2021 +
Commit: Andrew Ammerlaan riseup net>
CommitDate: Sat Mar 20 11:01:12 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b107d0c2
sci-biology/snpomatic: fix MultipleKeywordsLines
Package-Manager: Portage-3.0.17, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan riseup.net>
sci-biology/snpomatic/snpomatic-1.0.ebuild | 1 -
1 file changed, 1 deletion(-)
diff --git a/sci-biology/snpomatic/snpomatic-1.0.ebuild
b/sci-biology/snpomatic/snpomatic-1.0.ebuild
index 21857195a..e33271b2e 100644
--- a/sci-biology/snpomatic/snpomatic-1.0.ebuild
+++ b/sci-biology/snpomatic/snpomatic-1.0.ebuild
@@ -8,7 +8,6 @@ HOMEPAGE="https://github.com/magnusmanske/snpomatic;
if [ "$PV" == "" ]; then
inherit git-r3
EGIT_REPO_URI="https://github.com/magnusmanske/snpomatic.git;
- KEYWORDS=""
else
SRC_URI="https://github.com/magnusmanske/snpomatic/archive/v${PV}.tar.gz ->
${P}.tar.gz"
KEYWORDS="~amd64"
[gentoo-commits] proj/sci:master commit in: sci-biology/snpomatic/
commit: b2e582b1347b87415bfb4467e8f6da566a9f1305
Author: Andrew Ammerlaan riseup net>
AuthorDate: Sat Mar 6 14:34:33 2021 +
Commit: Andrew Ammerlaan riseup net>
CommitDate: Sat Mar 6 14:34:33 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b2e582b1
sci-biology/snpomatic: EAPI bump, add keywords
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan riseup.net>
.../{snpomatic-.ebuild => snpomatic-1.0.ebuild}| 14 ++
1 file changed, 6 insertions(+), 8 deletions(-)
diff --git a/sci-biology/snpomatic/snpomatic-.ebuild
b/sci-biology/snpomatic/snpomatic-1.0.ebuild
similarity index 74%
rename from sci-biology/snpomatic/snpomatic-.ebuild
rename to sci-biology/snpomatic/snpomatic-1.0.ebuild
index 15b8e3e4b..21857195a 100644
--- a/sci-biology/snpomatic/snpomatic-.ebuild
+++ b/sci-biology/snpomatic/snpomatic-1.0.ebuild
@@ -1,29 +1,27 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
-EAPI=5
-
-[ "$PV" == "" ] && inherit git-r3
+EAPI=7
DESCRIPTION="Stringent short-read aligner supporting filters and various
output formats"
HOMEPAGE="https://github.com/magnusmanske/snpomatic;
-# http://snpomatic.sourceforge.net/snpomatic_manual.pdf
if [ "$PV" == "" ]; then
+ inherit git-r3
EGIT_REPO_URI="https://github.com/magnusmanske/snpomatic.git;
KEYWORDS=""
else
- SRC_URI=""
- KEYWORDS=""
+
SRC_URI="https://github.com/magnusmanske/snpomatic/archive/v${PV}.tar.gz ->
${P}.tar.gz"
+ KEYWORDS="~amd64"
fi
LICENSE="GPL-3"
SLOT="0"
-IUSE=""
DEPEND=""
RDEPEND="${DEPEND}"
src_prepare(){
+ default
sed -e 's/^CXX=/#CXX=/;s/^CXXFLAGS=/#CXXFLAGS=/' -i Makefile || die
}
[gentoo-commits] proj/sci:master commit in: sci-biology/snpomatic/
commit: 244da94d9f3d1fa1a359a2663c2b8f309e94b634
Author: Martin Mokrejš fold natur cuni cz>
AuthorDate: Sun Apr 10 20:24:43 2016 +
Commit: Martin Mokrejs fold natur cuni cz>
CommitDate: Sun Apr 10 20:24:43 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=244da94d
sci-biology/snpomatic: new package
Package-Manager: portage-2.2.28
sci-biology/snpomatic/metadata.xml | 12 ++
sci-biology/snpomatic/snpomatic-.ebuild | 34 +
2 files changed, 46 insertions(+)
diff --git a/sci-biology/snpomatic/metadata.xml
b/sci-biology/snpomatic/metadata.xml
new file mode 100644
index 000..f68a1b6
--- /dev/null
+++ b/sci-biology/snpomatic/metadata.xml
@@ -0,0 +1,12 @@
+
+http://www.gentoo.org/dtd/metadata.dtd;>
+
+
+mmokr...@fold.natur.cuni.cz
+Martin Mokrejs
+
+
+sci-biol...@gentoo.org
+Gentoo Biology Project
+
+
diff --git a/sci-biology/snpomatic/snpomatic-.ebuild
b/sci-biology/snpomatic/snpomatic-.ebuild
new file mode 100644
index 000..1d134f1
--- /dev/null
+++ b/sci-biology/snpomatic/snpomatic-.ebuild
@@ -0,0 +1,34 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+[ "$PV" == "" ] && inherit git-r3
+
+DESCRIPTION="Stringent short-read aligner supporting filters and various
output formats"
+HOMEPAGE="https://github.com/magnusmanske/snpomatic;
+# http://snpomatic.sourceforge.net/snpomatic_manual.pdf
+if [ "$PV" == "" ]; then
+ EGIT_REPO_URI="https://github.com/magnusmanske/snpomatic.git;
+ KEYWORDS=""
+else
+ SRC_URI=""
+ KEYWORDS=""
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}"
+
+src_prepare(){
+ sed -e 's/^CXX=/#CXX=/;s/^CXXFLAGS=/#CXXFLAGS=/' -i Makefile || die
+}
+
+src_install(){
+ dobin findknownsnps
+ dodoc doc/Manual.doc
+}
