[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2023-12-11 Thread Horea Christian 
commit: 499bf5837c56f927845cf6686e1f0db64a00e314
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Dec 11 16:55:10 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Dec 11 16:55:10 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=499bf583

sci-libs/nibabel: drop 4.0.0

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-4.0.0.ebuild | 37 ---
 1 file changed, 37 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-4.0.0.ebuild 
b/sci-libs/nibabel/nibabel-4.0.0.ebuild
deleted file mode 100644
index 4a24fb940..0
--- a/sci-libs/nibabel/nibabel-4.0.0.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2023 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..11} )
-DISTUTILS_USE_SETUPTOOLS=rdepend
-
-inherit distutils-r1
-
-DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="https://nipy.org/nibabel/;
-SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="dicom"
-
-RDEPEND="
-   dev-python/numpy[${PYTHON_USEDEP}]
-   dev-python/packaging[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dicom? (
-   dev-python/pillow[${PYTHON_USEDEP}]
-   sci-libs/pydicom
-   )
-"
-
-EPYTEST_DESELECT=(
-   # Rported upstream:
-   # https://github.com/nipy/nibabel/issues/1191
-   nibabel/tests/test_volumeutils.py::test_a2f_nan2zero_range
-)
-
-distutils_enable_sphinx doc/source dev-python/texext dev-python/numpydoc 
dev-python/matplotlib
-distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2023-12-11 Thread Horea Christian 
commit: dd45595b671e57f5093b9cf2b6f76e1b5702a1fa
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Dec 11 16:54:46 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Dec 11 16:54:46 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=dd45595b

sci-libs/nibabel: add 5.1.0

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-5.1.0.ebuild | 35 +++
 1 file changed, 35 insertions(+)

diff --git a/sci-libs/nibabel/nibabel-5.1.0.ebuild 
b/sci-libs/nibabel/nibabel-5.1.0.ebuild
new file mode 100644
index 0..0fec805b1
--- /dev/null
+++ b/sci-libs/nibabel/nibabel-5.1.0.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_{10..11} )
+DISTUTILS_USE_PEP517=hatchling
+
+inherit distutils-r1
+
+DESCRIPTION="Access a cacophony of neuro-imaging file formats"
+HOMEPAGE="https://nipy.org/nibabel/;
+SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="dicom"
+
+RDEPEND="
+   dev-python/numpy[${PYTHON_USEDEP}]
+   dev-python/packaging[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dicom? (
+   dev-python/pillow[${PYTHON_USEDEP}]
+   sci-libs/pydicom
+   )
+"
+
+BDEPEND="test? (
+   dev-python/pytest-httpserver[${PYTHON_USEDEP}]
+)"
+
+distutils_enable_sphinx doc/source dev-python/texext dev-python/numpydoc 
dev-python/matplotlib
+distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2023-05-02 Thread Horea Christian 
commit: c3df4ab6e2c4549a2d00a05a66d436225291d8b7
Author: Horea Christian  chymera  eu>
AuthorDate: Tue May  2 23:48:31 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Tue May  2 23:48:31 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c3df4ab6

sci-libs/nibabel: enable py3.11

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-4.0.0.ebuild | 4 ++--
 sci-libs/nibabel/nibabel-5.0.0.ebuild | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-4.0.0.ebuild 
b/sci-libs/nibabel/nibabel-4.0.0.ebuild
index 2de1e6dc9..4a24fb940 100644
--- a/sci-libs/nibabel/nibabel-4.0.0.ebuild
+++ b/sci-libs/nibabel/nibabel-4.0.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_10 )
+PYTHON_COMPAT=( python3_{10..11} )
 DISTUTILS_USE_SETUPTOOLS=rdepend
 
 inherit distutils-r1

diff --git a/sci-libs/nibabel/nibabel-5.0.0.ebuild 
b/sci-libs/nibabel/nibabel-5.0.0.ebuild
index 07c2b35fc..0fec805b1 100644
--- a/sci-libs/nibabel/nibabel-5.0.0.ebuild
+++ b/sci-libs/nibabel/nibabel-5.0.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2022 Gentoo Authors
+# Copyright 1999-2023 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8
 
-PYTHON_COMPAT=( python3_10 )
+PYTHON_COMPAT=( python3_{10..11} )
 DISTUTILS_USE_PEP517=hatchling
 
 inherit distutils-r1

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2023-05-02 Thread Horea Christian 
commit: b35196f8ab2d440e2fe298e7ba947eabe9904de9
Author: Horea Christian  chymera  eu>
AuthorDate: Tue May  2 23:47:52 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Tue May  2 23:47:52 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b35196f8

sci-libs/nibabel: drop 3.2.1

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-3.2.1.ebuild | 41 ---
 1 file changed, 41 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-3.2.1.ebuild 
b/sci-libs/nibabel/nibabel-3.2.1.ebuild
deleted file mode 100644
index 97adfa2da..0
--- a/sci-libs/nibabel/nibabel-3.2.1.ebuild
+++ /dev/null
@@ -1,41 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_10 )
-DISTUTILS_USE_SETUPTOOLS=rdepend
-
-inherit distutils-r1
-
-DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="https://nipy.org/nibabel/;
-SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="dicom"
-
-RDEPEND="
-   dev-python/numpy[${PYTHON_USEDEP}]
-   dev-python/packaging[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/mock[${PYTHON_USEDEP}]
-   dicom? (
-   dev-python/pillow[${PYTHON_USEDEP}]
-   sci-libs/pydicom
-   )
-"
-
-BDEPEND="test? (
-   dev-python/pytest-doctestplus[${PYTHON_USEDEP}]
-)"
-
-EPYTEST_DESELECT=(
-   # Re-evaluate after 3.2.1
-   nibabel/gifti/tests/test_parse_gifti_fast.py::test_parse_dataarrays
-)
-
-distutils_enable_sphinx doc/source dev-python/texext dev-python/numpydoc 
dev-python/matplotlib
-distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2023-01-30 Thread Horea Christian 
commit: 72bd1a64770f38360ebfb9a96e0f47cfe857778c
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Jan 30 10:27:03 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Jan 30 10:27:03 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=72bd1a64

sci-libs/nibabel: version bump 5.0.0

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-5.0.0.ebuild | 35 +++
 1 file changed, 35 insertions(+)

diff --git a/sci-libs/nibabel/nibabel-5.0.0.ebuild 
b/sci-libs/nibabel/nibabel-5.0.0.ebuild
new file mode 100644
index 0..07c2b35fc
--- /dev/null
+++ b/sci-libs/nibabel/nibabel-5.0.0.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_10 )
+DISTUTILS_USE_PEP517=hatchling
+
+inherit distutils-r1
+
+DESCRIPTION="Access a cacophony of neuro-imaging file formats"
+HOMEPAGE="https://nipy.org/nibabel/;
+SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="dicom"
+
+RDEPEND="
+   dev-python/numpy[${PYTHON_USEDEP}]
+   dev-python/packaging[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dicom? (
+   dev-python/pillow[${PYTHON_USEDEP}]
+   sci-libs/pydicom
+   )
+"
+
+BDEPEND="test? (
+   dev-python/pytest-httpserver[${PYTHON_USEDEP}]
+)"
+
+distutils_enable_sphinx doc/source dev-python/texext dev-python/numpydoc 
dev-python/matplotlib
+distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2023-01-30 Thread Horea Christian 
commit: 933f19809917bf0e4b66f7f703c1ee8e546a7b11
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Jan 30 10:14:31 2023 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Jan 30 10:14:31 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=933f1980

sci-libs/nibabel: version bump 4.0.0

Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-4.0.0.ebuild | 37 +++
 1 file changed, 37 insertions(+)

diff --git a/sci-libs/nibabel/nibabel-4.0.0.ebuild 
b/sci-libs/nibabel/nibabel-4.0.0.ebuild
new file mode 100644
index 0..2de1e6dc9
--- /dev/null
+++ b/sci-libs/nibabel/nibabel-4.0.0.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2022 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+PYTHON_COMPAT=( python3_10 )
+DISTUTILS_USE_SETUPTOOLS=rdepend
+
+inherit distutils-r1
+
+DESCRIPTION="Access a cacophony of neuro-imaging file formats"
+HOMEPAGE="https://nipy.org/nibabel/;
+SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="dicom"
+
+RDEPEND="
+   dev-python/numpy[${PYTHON_USEDEP}]
+   dev-python/packaging[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dicom? (
+   dev-python/pillow[${PYTHON_USEDEP}]
+   sci-libs/pydicom
+   )
+"
+
+EPYTEST_DESELECT=(
+   # Rported upstream:
+   # https://github.com/nipy/nibabel/issues/1191
+   nibabel/tests/test_volumeutils.py::test_a2f_nan2zero_range
+)
+
+distutils_enable_sphinx doc/source dev-python/texext dev-python/numpydoc 
dev-python/matplotlib
+distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2023-01-12 Thread Andrew Ammerlaan 
commit: fe7a9e59b0096a5b06040a82bd97c63969b94cb7
Author: Andrew Ammerlaan  gentoo  org>
AuthorDate: Thu Jan 12 12:11:54 2023 +
Commit: Andrew Ammerlaan  gentoo  org>
CommitDate: Thu Jan 12 12:11:54 2023 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=fe7a9e59

sci-libs/nibabel: drop 3.0.2

Signed-off-by: Andrew Ammerlaan  gentoo.org>

 sci-libs/nibabel/nibabel-3.0.2.ebuild | 42 ---
 1 file changed, 42 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-3.0.2.ebuild 
b/sci-libs/nibabel/nibabel-3.0.2.ebuild
deleted file mode 100644
index 6c2cff127..0
--- a/sci-libs/nibabel/nibabel-3.0.2.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_10 )
-
-inherit distutils-r1
-
-DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="https://nipy.org/nibabel/;
-SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="dicom doc test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-   dev-python/numpy[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/mock[${PYTHON_USEDEP}]
-   dicom? (
-   sci-libs/pydicom
-   dev-python/pillow[${PYTHON_USEDEP}]
-   )
-"
-DEPEND="
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   test? (
-   ${RDEPEND}
-   dev-python/nose[${PYTHON_USEDEP}]
-   )
-   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-"
-
-python_test() {
-   cd "${BUILD_DIR}" || die
-   echo "backend: Agg" > matplotlibrc
-   MPLCONFIGDIR=. nosetests || die
-}

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2022-07-11 Thread Horea Christian 
commit: 2fce576bdc2488b408510f1dc2fcb13303ea7f4b
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Jul 11 13:40:20 2022 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Jul 11 13:40:20 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=2fce576b

sci-libs/nibabel: dropped deprecated live ebuild

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-.ebuild | 37 
 1 file changed, 37 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-.ebuild 
b/sci-libs/nibabel/nibabel-.ebuild
deleted file mode 100644
index 283ad8804..0
--- a/sci-libs/nibabel/nibabel-.ebuild
+++ /dev/null
@@ -1,37 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{7..9} )
-DISTUTILS_USE_SETUPTOOLS=rdepend
-
-inherit distutils-r1 git-r3
-
-DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="https://nipy.org/nibabel/;
-SRC_URI=""
-EGIT_REPO_URI="https://github.com/nipy/nibabel.git;
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS=""
-IUSE="dicom"
-
-RDEPEND="
-   dev-python/numpy[${PYTHON_USEDEP}]
-   dev-python/packaging[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/mock[${PYTHON_USEDEP}]
-   dicom? (
-   sci-libs/pydicom
-   dev-python/pillow[${PYTHON_USEDEP}]
-   )
-"
-
-BDEPEND="test? (
-   dev-python/pytest-doctestplus[${PYTHON_USEDEP}]
-)"
-
-distutils_enable_sphinx doc/source dev-python/texext dev-python/numpydoc 
dev-python/matplotlib
-distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2022-07-11 Thread Horea Christian 
commit: aac4cf4653bafefa5dad18421fbdb2867d3fb6de
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Jul 11 12:24:04 2022 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Jul 11 12:24:04 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=aac4cf46

sci-libs/nibabel: EAPI and PYTHON_COMPAT bump

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-2.5.1.ebuild | 6 +++---
 sci-libs/nibabel/nibabel-3.0.2.ebuild | 6 +++---
 sci-libs/nibabel/nibabel-3.2.1.ebuild | 4 ++--
 3 files changed, 8 insertions(+), 8 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-2.5.1.ebuild 
b/sci-libs/nibabel/nibabel-2.5.1.ebuild
index 3316b84d5..f0759b51a 100644
--- a/sci-libs/nibabel/nibabel-2.5.1.ebuild
+++ b/sci-libs/nibabel/nibabel-2.5.1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{8..10} )
 
 inherit distutils-r1
 

diff --git a/sci-libs/nibabel/nibabel-3.0.2.ebuild 
b/sci-libs/nibabel/nibabel-3.0.2.ebuild
index 3316b84d5..f0759b51a 100644
--- a/sci-libs/nibabel/nibabel-3.0.2.ebuild
+++ b/sci-libs/nibabel/nibabel-3.0.2.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{8..10} )
 
 inherit distutils-r1
 

diff --git a/sci-libs/nibabel/nibabel-3.2.1.ebuild 
b/sci-libs/nibabel/nibabel-3.2.1.ebuild
index 43720d35f..c3b45a93b 100644
--- a/sci-libs/nibabel/nibabel-3.2.1.ebuild
+++ b/sci-libs/nibabel/nibabel-3.2.1.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2021 Gentoo Authors
+# Copyright 1999-2022 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=7
+EAPI=8
 
 PYTHON_COMPAT=( python3_{8..10} )
 DISTUTILS_USE_SETUPTOOLS=rdepend

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2022-07-11 Thread Horea Christian 
commit: 1f98a37e19cfca2905852b935e0512f36f2bd6e1
Author: Horea Christian  chymera  eu>
AuthorDate: Mon Jul 11 12:24:43 2022 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Jul 11 12:24:43 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=1f98a37e

sci-libs/nibabel: dropped version with missing sources

Package-Manager: Portage-3.0.30, Repoman-3.0.3
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-2.5.1.ebuild | 42 ---
 1 file changed, 42 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-2.5.1.ebuild 
b/sci-libs/nibabel/nibabel-2.5.1.ebuild
deleted file mode 100644
index f0759b51a..0
--- a/sci-libs/nibabel/nibabel-2.5.1.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{8..10} )
-
-inherit distutils-r1
-
-DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="https://nipy.org/nibabel/;
-SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="dicom doc test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-   dev-python/numpy[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/mock[${PYTHON_USEDEP}]
-   dicom? (
-   sci-libs/pydicom
-   dev-python/pillow[${PYTHON_USEDEP}]
-   )
-"
-DEPEND="
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   test? (
-   ${RDEPEND}
-   dev-python/nose[${PYTHON_USEDEP}]
-   )
-   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-"
-
-python_test() {
-   cd "${BUILD_DIR}" || die
-   echo "backend: Agg" > matplotlibrc
-   MPLCONFIGDIR=. nosetests || die
-}

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2022-07-06 Thread Sam James 
commit: e3383c8190097c6975adf18209345121ffbaa8e1
Author: Sam James  gentoo  org>
AuthorDate: Thu Jul  7 04:03:37 2022 +
Commit: Sam James  gentoo  org>
CommitDate: Thu Jul  7 04:54:09 2022 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e3383c81

sci-libs/nibabel: enable py3.10 and disable py3.7

See 
https://projects.gentoo.org/python/guide/distutils.html#running-tests-with-virtualx
 re virtx.

Signed-off-by: Sam James  gentoo.org>

 sci-libs/nibabel/nibabel-3.2.1.ebuild | 11 ---
 1 file changed, 8 insertions(+), 3 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-3.2.1.ebuild 
b/sci-libs/nibabel/nibabel-3.2.1.ebuild
index d469867f9..43720d35f 100644
--- a/sci-libs/nibabel/nibabel-3.2.1.ebuild
+++ b/sci-libs/nibabel/nibabel-3.2.1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{7..9} )
+PYTHON_COMPAT=( python3_{8..10} )
 DISTUTILS_USE_SETUPTOOLS=rdepend
 
 inherit distutils-r1
@@ -23,14 +23,19 @@ RDEPEND="
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/mock[${PYTHON_USEDEP}]
dicom? (
-   sci-libs/pydicom
dev-python/pillow[${PYTHON_USEDEP}]
-   )
+   sci-libs/pydicom
+   )
 "
 
 BDEPEND="test? (
dev-python/pytest-doctestplus[${PYTHON_USEDEP}]
 )"
 
+EPYTEST_DESELECT=(
+   # Re-evaluate after 3.2.1
+   nibabel/gifti/tests/test_parse_gifti_fast.py::test_parse_dataarrays
+)
+
 distutils_enable_sphinx doc/source dev-python/texext dev-python/numpydoc 
dev-python/matplotlib
 distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2021-01-13 Thread Andrew Ammerlaan 
commit: 0e52f965c2be19ae962f7c7e3f979d3eb0447472
Author: Andrew Ammerlaan  riseup  net>
AuthorDate: Wed Jan 13 21:02:30 2021 +
Commit: Andrew Ammerlaan  riseup  net>
CommitDate: Wed Jan 13 21:02:30 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=0e52f965

sci-libs/nibabel: use https for homepage

Package-Manager: Portage-3.0.13, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan  riseup.net>

 sci-libs/nibabel/nibabel-2.5.1.ebuild | 4 ++--
 sci-libs/nibabel/nibabel-3.0.2.ebuild | 4 ++--
 sci-libs/nibabel/nibabel-3.2.1.ebuild | 2 +-
 sci-libs/nibabel/nibabel-.ebuild  | 2 +-
 4 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-2.5.1.ebuild 
b/sci-libs/nibabel/nibabel-2.5.1.ebuild
index a336af17b..ebec34f95 100644
--- a/sci-libs/nibabel/nibabel-2.5.1.ebuild
+++ b/sci-libs/nibabel/nibabel-2.5.1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_{6..9} )
 inherit distutils-r1
 
 DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="http://nipy.org/nibabel/;
+HOMEPAGE="https://nipy.org/nibabel/;
 SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="MIT"

diff --git a/sci-libs/nibabel/nibabel-3.0.2.ebuild 
b/sci-libs/nibabel/nibabel-3.0.2.ebuild
index a336af17b..ebec34f95 100644
--- a/sci-libs/nibabel/nibabel-3.0.2.ebuild
+++ b/sci-libs/nibabel/nibabel-3.0.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
@@ -8,7 +8,7 @@ PYTHON_COMPAT=( python3_{6..9} )
 inherit distutils-r1
 
 DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="http://nipy.org/nibabel/;
+HOMEPAGE="https://nipy.org/nibabel/;
 SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="MIT"

diff --git a/sci-libs/nibabel/nibabel-3.2.1.ebuild 
b/sci-libs/nibabel/nibabel-3.2.1.ebuild
index 03a5f5b48..d469867f9 100644
--- a/sci-libs/nibabel/nibabel-3.2.1.ebuild
+++ b/sci-libs/nibabel/nibabel-3.2.1.ebuild
@@ -9,7 +9,7 @@ DISTUTILS_USE_SETUPTOOLS=rdepend
 inherit distutils-r1
 
 DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="http://nipy.org/nibabel/;
+HOMEPAGE="https://nipy.org/nibabel/;
 SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
 
 LICENSE="MIT"

diff --git a/sci-libs/nibabel/nibabel-.ebuild 
b/sci-libs/nibabel/nibabel-.ebuild
index 611202ad7..283ad8804 100644
--- a/sci-libs/nibabel/nibabel-.ebuild
+++ b/sci-libs/nibabel/nibabel-.ebuild
@@ -9,7 +9,7 @@ DISTUTILS_USE_SETUPTOOLS=rdepend
 inherit distutils-r1 git-r3
 
 DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="http://nipy.org/nibabel/;
+HOMEPAGE="https://nipy.org/nibabel/;
 SRC_URI=""
 EGIT_REPO_URI="https://github.com/nipy/nibabel.git;

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2021-01-06 Thread Andrew Ammerlaan 
commit: ab5fb3e71f8ff3a9d9166077b42e509c7e4c8239
Author: Andrew Ammerlaan  riseup  net>
AuthorDate: Wed Jan  6 10:37:02 2021 +
Commit: Andrew Ammerlaan  riseup  net>
CommitDate: Wed Jan  6 10:37:47 2021 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ab5fb3e7

sci-libs/nibabel: version bump, fix doc building

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan  riseup.net>

 sci-libs/nibabel/nibabel-3.2.1.ebuild | 36 +++
 sci-libs/nibabel/nibabel-.ebuild  | 28 +++
 2 files changed, 47 insertions(+), 17 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-3.2.1.ebuild 
b/sci-libs/nibabel/nibabel-3.2.1.ebuild
new file mode 100644
index 0..03a5f5b48
--- /dev/null
+++ b/sci-libs/nibabel/nibabel-3.2.1.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_{7..9} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
+
+inherit distutils-r1
+
+DESCRIPTION="Access a cacophony of neuro-imaging file formats"
+HOMEPAGE="http://nipy.org/nibabel/;
+SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="dicom"
+
+RDEPEND="
+   dev-python/numpy[${PYTHON_USEDEP}]
+   dev-python/packaging[${PYTHON_USEDEP}]
+   dev-python/scipy[${PYTHON_USEDEP}]
+   dev-python/mock[${PYTHON_USEDEP}]
+   dicom? (
+   sci-libs/pydicom
+   dev-python/pillow[${PYTHON_USEDEP}]
+   )
+"
+
+BDEPEND="test? (
+   dev-python/pytest-doctestplus[${PYTHON_USEDEP}]
+)"
+
+distutils_enable_sphinx doc/source dev-python/texext dev-python/numpydoc 
dev-python/matplotlib
+distutils_enable_tests pytest

diff --git a/sci-libs/nibabel/nibabel-.ebuild 
b/sci-libs/nibabel/nibabel-.ebuild
index 1fa595d11..611202ad7 100644
--- a/sci-libs/nibabel/nibabel-.ebuild
+++ b/sci-libs/nibabel/nibabel-.ebuild
@@ -1,9 +1,10 @@
-# Copyright 1999-2020 Gentoo Authors
+# Copyright 1999-2021 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{6..9} )
+PYTHON_COMPAT=( python3_{7..9} )
+DISTUTILS_USE_SETUPTOOLS=rdepend
 
 inherit distutils-r1 git-r3
 
@@ -15,11 +16,11 @@ EGIT_REPO_URI="https://github.com/nipy/nibabel.git;
 LICENSE="MIT"
 SLOT="0"
 KEYWORDS=""
-IUSE="dicom doc test"
-RESTRICT="!test? ( test )"
+IUSE="dicom"
 
 RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
+   dev-python/packaging[${PYTHON_USEDEP}]
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/mock[${PYTHON_USEDEP}]
dicom? (
@@ -27,17 +28,10 @@ RDEPEND="
dev-python/pillow[${PYTHON_USEDEP}]
)
 "
-DEPEND="
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   test? (
-   ${RDEPEND}
-   dev-python/nose[${PYTHON_USEDEP}]
-   )
-   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-"
 
-python_test() {
-   cd "${BUILD_DIR}" || die
-   echo "backend: Agg" > matplotlibrc
-   MPLCONFIGDIR=. nosetests || die
-}
+BDEPEND="test? (
+   dev-python/pytest-doctestplus[${PYTHON_USEDEP}]
+)"
+
+distutils_enable_sphinx doc/source dev-python/texext dev-python/numpydoc 
dev-python/matplotlib
+distutils_enable_tests pytest

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2020-12-24 Thread Horea Christian 
commit: cf4e0a8c9a6498ae197c210128849b506b846be8
Author: Horea Christian  chymera  eu>
AuthorDate: Thu Dec 24 11:05:04 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Thu Dec 24 11:05:04 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=cf4e0a8c

sci-libs/nibabel: conditional test restriction

Package-Manager: Portage-3.0.12, Repoman-3.0.2
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-2.5.1.ebuild | 1 +
 sci-libs/nibabel/nibabel-3.0.2.ebuild | 1 +
 sci-libs/nibabel/nibabel-.ebuild  | 1 +
 3 files changed, 3 insertions(+)

diff --git a/sci-libs/nibabel/nibabel-2.5.1.ebuild 
b/sci-libs/nibabel/nibabel-2.5.1.ebuild
index c3143ae9c..a336af17b 100644
--- a/sci-libs/nibabel/nibabel-2.5.1.ebuild
+++ b/sci-libs/nibabel/nibabel-2.5.1.ebuild
@@ -15,6 +15,7 @@ LICENSE="MIT"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE="dicom doc test"
+RESTRICT="!test? ( test )"
 
 RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]

diff --git a/sci-libs/nibabel/nibabel-3.0.2.ebuild 
b/sci-libs/nibabel/nibabel-3.0.2.ebuild
index c3143ae9c..a336af17b 100644
--- a/sci-libs/nibabel/nibabel-3.0.2.ebuild
+++ b/sci-libs/nibabel/nibabel-3.0.2.ebuild
@@ -15,6 +15,7 @@ LICENSE="MIT"
 SLOT="0"
 KEYWORDS="~amd64 ~x86"
 IUSE="dicom doc test"
+RESTRICT="!test? ( test )"
 
 RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]

diff --git a/sci-libs/nibabel/nibabel-.ebuild 
b/sci-libs/nibabel/nibabel-.ebuild
index cd12b33de..1fa595d11 100644
--- a/sci-libs/nibabel/nibabel-.ebuild
+++ b/sci-libs/nibabel/nibabel-.ebuild
@@ -16,6 +16,7 @@ LICENSE="MIT"
 SLOT="0"
 KEYWORDS=""
 IUSE="dicom doc test"
+RESTRICT="!test? ( test )"
 
 RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2020-09-26 Thread Horea Christian 
commit: 4efd7d1c7665e0e3370005e1016311952a5d4460
Author: Horea Christian  chymera  eu>
AuthorDate: Sun Sep 27 03:26:29 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Sun Sep 27 03:26:29 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=4efd7d1c

sci-libs/nibabel: removed old version, PYTHON_COMPAT update

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-2.3.1.ebuild | 43 ---
 sci-libs/nibabel/nibabel-2.5.1.ebuild |  5 ++--
 sci-libs/nibabel/nibabel-3.0.2.ebuild |  5 ++--
 sci-libs/nibabel/nibabel-.ebuild  | 10 
 4 files changed, 8 insertions(+), 55 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-2.3.1.ebuild 
b/sci-libs/nibabel/nibabel-2.3.1.ebuild
deleted file mode 100644
index 1b571d4b0..0
--- a/sci-libs/nibabel/nibabel-2.3.1.ebuild
+++ /dev/null
@@ -1,43 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python3_{6,7,8} )
-
-inherit distutils-r1
-
-DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="http://nipy.org/nibabel/;
-SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-KEYWORDS="~amd64 ~x86"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE="dicom doc test"
-
-RDEPEND="
-   dev-python/numpy[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/mock[${PYTHON_USEDEP}]
-   dicom? (
-   sci-libs/pydicom
-   dev-python/pillow[${PYTHON_USEDEP}]
-   )
-   "
-
-DEPEND="
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   test? (
-   ${RDEPEND}
-   dev-python/nose[${PYTHON_USEDEP}]
-   )
-   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-   "
-
-python_test() {
-   cd "${BUILD_DIR}" || die
-   echo "backend: Agg" > matplotlibrc
-   MPLCONFIGDIR=. nosetests || die
-}

diff --git a/sci-libs/nibabel/nibabel-2.5.1.ebuild 
b/sci-libs/nibabel/nibabel-2.5.1.ebuild
index e377513f2..c3143ae9c 100644
--- a/sci-libs/nibabel/nibabel-2.5.1.ebuild
+++ b/sci-libs/nibabel/nibabel-2.5.1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{6,7,8} )
+PYTHON_COMPAT=( python3_{6..9} )
 
 inherit distutils-r1
 
@@ -11,10 +11,9 @@ DESCRIPTION="Access a cacophony of neuro-imaging file 
formats"
 HOMEPAGE="http://nipy.org/nibabel/;
 SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
 
-KEYWORDS="~amd64 ~x86"
-
 LICENSE="MIT"
 SLOT="0"
+KEYWORDS="~amd64 ~x86"
 IUSE="dicom doc test"
 
 RDEPEND="

diff --git a/sci-libs/nibabel/nibabel-3.0.2.ebuild 
b/sci-libs/nibabel/nibabel-3.0.2.ebuild
index e377513f2..c3143ae9c 100644
--- a/sci-libs/nibabel/nibabel-3.0.2.ebuild
+++ b/sci-libs/nibabel/nibabel-3.0.2.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{6,7,8} )
+PYTHON_COMPAT=( python3_{6..9} )
 
 inherit distutils-r1
 
@@ -11,10 +11,9 @@ DESCRIPTION="Access a cacophony of neuro-imaging file 
formats"
 HOMEPAGE="http://nipy.org/nibabel/;
 SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
 
-KEYWORDS="~amd64 ~x86"
-
 LICENSE="MIT"
 SLOT="0"
+KEYWORDS="~amd64 ~x86"
 IUSE="dicom doc test"
 
 RDEPEND="

diff --git a/sci-libs/nibabel/nibabel-.ebuild 
b/sci-libs/nibabel/nibabel-.ebuild
index 8c4e25842..cd12b33de 100644
--- a/sci-libs/nibabel/nibabel-.ebuild
+++ b/sci-libs/nibabel/nibabel-.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_{6,7,8} )
+PYTHON_COMPAT=( python3_{6..9} )
 
 inherit distutils-r1 git-r3
 
@@ -14,8 +14,8 @@ EGIT_REPO_URI="https://github.com/nipy/nibabel.git;
 
 LICENSE="MIT"
 SLOT="0"
-IUSE="dicom doc test"
 KEYWORDS=""
+IUSE="dicom doc test"
 
 RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
@@ -25,8 +25,7 @@ RDEPEND="
sci-libs/pydicom
dev-python/pillow[${PYTHON_USEDEP}]
)
-   "
-
+"
 DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
test? (
@@ -34,10 +33,9 @@ DEPEND="
dev-python/nose[${PYTHON_USEDEP}]
)
doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-   "
+"
 
 python_test() {
-   distutils-r1_install_for_testing
cd "${BUILD_DIR}" || die
echo "backend: Agg" > matplotlibrc
MPLCONFIGDIR=. nosetests || die

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2020-09-25 Thread Horea Christian 
commit: 88d61613b6f11b6a0b4faa5de1554b4743e7dade
Author: Horea Christian  chymera  eu>
AuthorDate: Fri Sep 25 09:17:13 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Fri Sep 25 09:17:13 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=88d61613

sci-libs/nibabel: removed old version, PYTHON_COMPAT update

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-2.3.0.ebuild | 44 ---
 sci-libs/nibabel/nibabel-2.3.1.ebuild |  6 ++---
 sci-libs/nibabel/nibabel-2.5.1.ebuild |  4 ++--
 sci-libs/nibabel/nibabel-3.0.2.ebuild |  4 ++--
 sci-libs/nibabel/nibabel-.ebuild  |  6 ++---
 5 files changed, 10 insertions(+), 54 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-2.3.0.ebuild 
b/sci-libs/nibabel/nibabel-2.3.0.ebuild
deleted file mode 100644
index acd9fed6c..0
--- a/sci-libs/nibabel/nibabel-2.3.0.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
-
-inherit distutils-r1
-
-DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="http://nipy.org/nibabel/;
-SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-KEYWORDS="~amd64 ~x86"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE="dicom doc test"
-
-RDEPEND="
-   dev-python/numpy[${PYTHON_USEDEP}]
-   dev-python/scipy[${PYTHON_USEDEP}]
-   dev-python/mock[${PYTHON_USEDEP}]
-   dicom? (
-   sci-libs/pydicom[${PYTHON_USEDEP}]
-   dev-python/pillow[${PYTHON_USEDEP}]
-   )
-   "
-
-DEPEND="
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   test? (
-   ${RDEPEND}
-   dev-python/nose[${PYTHON_USEDEP}]
-   )
-   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-   "
-
-python_test() {
-   distutils-r1_install_for_testing
-   cd "${BUILD_DIR}" || die
-   echo "backend: Agg" > matplotlibrc
-   MPLCONFIGDIR=. nosetests || die
-}

diff --git a/sci-libs/nibabel/nibabel-2.3.1.ebuild 
b/sci-libs/nibabel/nibabel-2.3.1.ebuild
index 4503f2519..1b571d4b0 100644
--- a/sci-libs/nibabel/nibabel-2.3.1.ebuild
+++ b/sci-libs/nibabel/nibabel-2.3.1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python3_{6,7,8} )
 
 inherit distutils-r1
 
@@ -22,7 +22,7 @@ RDEPEND="
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/mock[${PYTHON_USEDEP}]
dicom? (
-   sci-libs/pydicom[${PYTHON_USEDEP}]
+   sci-libs/pydicom
dev-python/pillow[${PYTHON_USEDEP}]
)
"

diff --git a/sci-libs/nibabel/nibabel-2.5.1.ebuild 
b/sci-libs/nibabel/nibabel-2.5.1.ebuild
index 63935404a..e377513f2 100644
--- a/sci-libs/nibabel/nibabel-2.5.1.ebuild
+++ b/sci-libs/nibabel/nibabel-2.5.1.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_6 )
+PYTHON_COMPAT=( python3_{6,7,8} )
 
 inherit distutils-r1
 
@@ -22,7 +22,7 @@ RDEPEND="
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/mock[${PYTHON_USEDEP}]
dicom? (
-   sci-libs/pydicom[${PYTHON_USEDEP}]
+   sci-libs/pydicom
dev-python/pillow[${PYTHON_USEDEP}]
)
 "

diff --git a/sci-libs/nibabel/nibabel-3.0.2.ebuild 
b/sci-libs/nibabel/nibabel-3.0.2.ebuild
index a49cca239..e377513f2 100644
--- a/sci-libs/nibabel/nibabel-3.0.2.ebuild
+++ b/sci-libs/nibabel/nibabel-3.0.2.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=7
 
-PYTHON_COMPAT=( python3_6 python3_7 )
+PYTHON_COMPAT=( python3_{6,7,8} )
 
 inherit distutils-r1
 
@@ -22,7 +22,7 @@ RDEPEND="
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/mock[${PYTHON_USEDEP}]
dicom? (
-   sci-libs/pydicom[${PYTHON_USEDEP}]
+   sci-libs/pydicom
dev-python/pillow[${PYTHON_USEDEP}]
)
 "

diff --git a/sci-libs/nibabel/nibabel-.ebuild 
b/sci-libs/nibabel/nibabel-.ebuild
index 68f9e1a3f..8c4e25842 100644
--- a/sci-libs/nibabel/nibabel-.ebuild
+++ b/sci-libs/nibabel/nibabel-.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python3_{6,7,8} )
 
 inherit distutils-r1 git-r3
 
@@ -22,7 +22,7 @@ RDEPEND="
dev-python/scipy[${PYTHON_USEDEP}]
dev-python/mock[${PYTHON_USEDEP}]
dicom? (
-   sci-libs/pydicom[${PYTHON_USEDEP}]
+   sci-libs/pydicom
dev-python/pillow[${PYTHON_USEDEP}]
)
"

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/, sci-libs/scikits_video/, dev-python/ccdproc/, ...

2020-09-24 Thread Aisha Tammy 
.0.2.ebuild sci-libs/nibabel/nibabel-.ebuild 
sci-libs/nipy/nipy-0.4.1.ebuild sci-libs/nipy/nipy-0.4.2.ebuild 
sci-libs/nipy/nipy-.ebuild sci-libs/nipype/nipype-1.1.1-r1.ebuild 
sci-libs/nipype/nipype-1.1.1-r2.ebuild sci-libs/pmx/pmx-.ebuild 
sci-libs/pybids/pybids-0.10.2.ebuild sci-libs/pybids/pybids-0.11.1.ebuild 
sci-libs/pybids/pybids-0.5.0.ebuild sci-libs/pybids/pybids-0.6.5.ebuild 
sci-libs/scikits_video/scikits_video-1.1.11_p20200114.ebuild 
sci-libs/spams-python/spams-python-2.6.ebuild 
sci-libs/spyking-circus/spyking-circus-0.9.6.ebuild 
sci-visualization/fsleyes/fsleyes-0.32.0.ebuild 
sci-visualization/fsleyes/fsleyes-0.32.3.ebuild
X-VCS-Directories: dev-python/pysolar/ sci-visualization/fsleyes/ 
dev-python/astropy/ dev-python/fslpy/ sci-biology/nistats/ sci-libs/nipy/ 
sci-libs/pybids/ dev-python/photutils/ sci-libs/pmx/ 
sci-geosciences/pydap_responses_matlab/ sci-biology/psychopy/ dev-python/ufl/ 
dev-python/trimesh/ sci-biology/dipy/ sci-biology/behaviopy/ 
sci-libs/spyking-circus/ sci-biology/pysurfer/ dev-python/astropysics/ 
sci-biology/samri/ sci-biology/pybrain/ sci-libs/nipype/ 
sci-biology/mne-python/ sci-biology/kat/ sci-biology/metaseq/ 
sci-biology/nilearn/ sci-libs/nibabel/ sci-libs/scikits_video/ 
dev-python/ccdproc/ dev-python/bokeh/ sci-chemistry/pesto/ dev-python/gammapy/ 
sci-biology/deeptools/ sci-libs/spams-python/ sci-biology/nitime/
X-VCS-Committer: epsilon-0
X-VCS-Committer-Name: Aisha Tammy
X-VCS-Revision: db8050af46235f9b1acd2fb76583516a92576f6d
X-VCS-Branch: master
Date: Thu, 24 Sep 2020 15:59:27 + (UTC)

commit: db8050af46235f9b1acd2fb76583516a92576f6d
Author: Aisha Tammy  aisha  cc>
AuthorDate: Thu Sep 24 15:53:32 2020 +
Commit: Aisha Tammy  aisha  cc>
CommitDate: Thu Sep 24 15:58:48 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=db8050af

dev-python/scipy: mass dependency name update

Package-Manager: Portage-3.0.8, Repoman-3.0.1
Signed-off-by: Aisha Tammy  aisha.cc>

 dev-python/astropy/astropy-.ebuild  | 2 +-
 dev-python/astropysics/astropysics-.ebuild  | 2 +-
 dev-python/bokeh/packs  | 2 +-
 dev-python/ccdproc/ccdproc-.ebuild  | 2 +-
 dev-python/fslpy/fslpy-2.6.2.ebuild | 2 +-
 dev-python/fslpy/fslpy-2.7.0.ebuild | 2 +-
 dev-python/fslpy/fslpy-2.8.4.ebuild | 2 +-
 dev-python/gammapy/gammapy-.ebuild  | 2 +-
 dev-python/photutils/photutils-.ebuild  | 2 +-
 dev-python/pysolar/pysolar-0.8.ebuild   | 2 +-
 dev-python/trimesh/trimesh-3.3.5.ebuild | 2 +-
 dev-python/trimesh/trimesh-3.5.14.ebuild| 2 +-
 dev-python/trimesh/trimesh-3.6.13.ebuild| 2 +-
 dev-python/ufl/ufl-2019.1.0.ebuild  | 2 +-
 sci-biology/behaviopy/behaviopy-0.1.ebuild  | 2 +-
 sci-biology/behaviopy/behaviopy-.ebuild | 2 +-
 sci-biology/deeptools/deeptools-2.5.0.ebuild| 2 +-
 sci-biology/deeptools/deeptools-.ebuild | 2 +-
 sci-biology/dipy/dipy-0.11.0.ebuild | 2 +-
 sci-biology/dipy/dipy-1.1.1.ebuild  | 2 +-
 sci-biology/dipy/dipy-.ebuild   | 2 +-
 sci-biology/kat/kat-2.4.2.ebuild| 2 +-
 sci-biology/kat/kat-.ebuild | 2 +-
 sci-biology/metaseq/metaseq-0.5.3.ebuild| 2 +-
 sci-biology/mne-python/mne-python-0.7.ebuild| 2 +-
 sci-biology/mne-python/mne-python-.ebuild   | 2 +-
 sci-biology/nilearn/nilearn-0.4.2.ebuild| 2 +-
 sci-biology/nilearn/nilearn-0.5.0.ebuild| 2 +-
 sci-biology/nilearn/nilearn-0.5.2.ebuild| 2 +-
 sci-biology/nilearn/nilearn-0.6.2.ebuild| 2 +-
 sci-biology/nilearn/nilearn-.ebuild | 2 +-
 sci-biology/nistats/nistats-.ebuild | 2 +-
 sci-biology/nitime/nitime-0.6.ebuild| 2 +-
 sci-biology/nitime/nitime-.ebuild   | 2 +-
 sci-biology/psychopy/psychopy-1.84.0.ebuild | 2 +-
 sci-biology/psychopy/psychopy-1.84.1.ebuild | 2 +-
 sci-biology/psychopy/psychopy-1.84.2.ebuild | 2 +-

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2020-03-13 Thread Horea Christian 
commit: 5199050855472db48e12b9669c4075560bf0f63a
Author: Horea Christian  chymera  eu>
AuthorDate: Fri Mar 13 17:50:00 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Fri Mar 13 17:50:00 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=51990508

sci-libs/nibabel: version bump 3.0.2

Package-Manager: Portage-2.3.92, Repoman-2.3.20
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-3.0.2.ebuild | 42 +++
 1 file changed, 42 insertions(+)

diff --git a/sci-libs/nibabel/nibabel-3.0.2.ebuild 
b/sci-libs/nibabel/nibabel-3.0.2.ebuild
new file mode 100644
index 0..e64e4e48b
--- /dev/null
+++ b/sci-libs/nibabel/nibabel-3.0.2.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python3_6 python3_7 )
+
+inherit distutils-r1
+
+DESCRIPTION="Access a cacophony of neuro-imaging file formats"
+HOMEPAGE="http://nipy.org/nibabel/;
+SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+KEYWORDS="~amd64 ~x86"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE="dicom doc test"
+
+RDEPEND="
+   dev-python/numpy[${PYTHON_USEDEP}]
+   sci-libs/scipy[${PYTHON_USEDEP}]
+   dev-python/mock[${PYTHON_USEDEP}]
+   dicom? (
+   sci-libs/pydicom[${PYTHON_USEDEP}]
+   dev-python/pillow[${PYTHON_USEDEP}]
+   )
+"
+DEPEND="
+   dev-python/setuptools[${PYTHON_USEDEP}]
+   test? (
+   ${RDEPEND}
+   dev-python/nose[${PYTHON_USEDEP}]
+   )
+   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
+"
+
+python_test() {
+   cd "${BUILD_DIR}" || die
+   echo "backend: Agg" > matplotlibrc
+   MPLCONFIGDIR=. nosetests || die
+}

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2020-01-08 Thread Horea Christian 
commit: 168117d6f6d36f74ef5a9311cb7f7af58ef60ea1
Author: Horea Christian  chymera  eu>
AuthorDate: Wed Jan  8 21:48:05 2020 +
Commit: Horea Christian  gmail  com>
CommitDate: Wed Jan  8 21:48:05 2020 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=168117d6

sci-libs/nibabel: deprecated versions and PYTHON_COMPAT

Package-Manager: Portage-2.3.84, Repoman-2.3.20
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/nibabel-2.0.1.ebuild | 44 ---
 sci-libs/nibabel/nibabel-2.1.0.ebuild | 44 ---
 sci-libs/nibabel/nibabel-2.5.1.ebuild |  4 ++--
 3 files changed, 2 insertions(+), 90 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-2.0.1.ebuild 
b/sci-libs/nibabel/nibabel-2.0.1.ebuild
deleted file mode 100644
index 71dc0fff3..0
--- a/sci-libs/nibabel/nibabel-2.0.1.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
-
-inherit distutils-r1
-
-DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="http://nipy.org/nibabel/;
-SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-KEYWORDS="~amd64 ~x86"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE="dicom doc test"
-
-RDEPEND="
-   dev-python/numpy[${PYTHON_USEDEP}]
-   sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/mock[${PYTHON_USEDEP}]
-   dicom? (
-   sci-libs/pydicom[${PYTHON_USEDEP}]
-   dev-python/pillow[${PYTHON_USEDEP}]
-   )
-   "
-
-DEPEND="
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   test? (
-   ${RDEPEND}
-   dev-python/nose[${PYTHON_USEDEP}]
-   )
-   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-   "
-
-python_test() {
-   distutils-r1_install_for_testing
-   cd "${BUILD_DIR}" || die
-   echo "backend: Agg" > matplotlibrc
-   MPLCONFIGDIR=. nosetests || die
-}

diff --git a/sci-libs/nibabel/nibabel-2.1.0.ebuild 
b/sci-libs/nibabel/nibabel-2.1.0.ebuild
deleted file mode 100644
index d25151e1a..0
--- a/sci-libs/nibabel/nibabel-2.1.0.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=7
-
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
-
-inherit distutils-r1
-
-DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="http://nipy.org/nibabel/;
-SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-KEYWORDS="~amd64 ~x86"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE="dicom doc test"
-
-RDEPEND="
-   dev-python/numpy[${PYTHON_USEDEP}]
-   sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/mock[${PYTHON_USEDEP}]
-   dicom? (
-   sci-libs/pydicom[${PYTHON_USEDEP}]
-   dev-python/pillow[${PYTHON_USEDEP}]
-   )
-   "
-
-DEPEND="
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   test? (
-   ${RDEPEND}
-   dev-python/nose[${PYTHON_USEDEP}]
-   )
-   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-   "
-
-python_test() {
-   distutils-r1_install_for_testing
-   cd "${BUILD_DIR}" || die
-   echo "backend: Agg" > matplotlibrc
-   MPLCONFIGDIR=. nosetests || die
-}

diff --git a/sci-libs/nibabel/nibabel-2.5.1.ebuild 
b/sci-libs/nibabel/nibabel-2.5.1.ebuild
index a76565117..1b8aa9084 100644
--- a/sci-libs/nibabel/nibabel-2.5.1.ebuild
+++ b/sci-libs/nibabel/nibabel-2.5.1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2019 Gentoo Authors
+# Copyright 1999-2020 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python3_6 )
 
 inherit distutils-r1

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2019-11-10 Thread Horea Christian 
commit: 9fb36b6a13413ad351f954bc1733351af4d64b79
Author: Horea Christian  chymera  eu>
AuthorDate: Sun Nov 10 12:20:25 2019 +
Commit: Horea Christian  gmail  com>
CommitDate: Sun Nov 10 12:20:25 2019 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9fb36b6a

sci-libs/nibabel: version bump 2.5.1

with added test suite support

Package-Manager: Portage-2.3.78, Repoman-2.3.17
Signed-off-by: Horea Christian  chymera.eu>

 sci-libs/nibabel/metadata.xml | 12 +-
 sci-libs/nibabel/nibabel-2.5.1.ebuild | 42 +++
 2 files changed, 48 insertions(+), 6 deletions(-)

diff --git a/sci-libs/nibabel/metadata.xml b/sci-libs/nibabel/metadata.xml
index 59e566e2d..66f8b64ec 100644
--- a/sci-libs/nibabel/metadata.xml
+++ b/sci-libs/nibabel/metadata.xml
@@ -10,12 +10,12 @@
Gentoo Science Project


-The package provides read and write access to some common medical and
-neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI,
-NIfTI1, MINC, MGH and ECAT as well as PAR/REC. It can read and write Freesurfer
-geometry, and read Freesurfer morphometry and annotation files. There is some
-very limited support for DICOM. NiBabel is the successor of PyNIfTI.
-
+   The package provides read and write access to some common 
medical and
+   neuroimaging file formats, including: ANALYZE (plain, SPM99, 
SPM2), GIFTI,
+   NIfTI1, MINC, MGH and ECAT as well as PAR/REC. It can read and 
write Freesurfer
+   geometry, and read Freesurfer morphometry and annotation files. 
There is some
+   very limited support for DICOM. NiBabel is the successor of 
PyNIfTI.
+   

Adds limited read support for the DICOM 
imaging format.


diff --git a/sci-libs/nibabel/nibabel-2.5.1.ebuild 
b/sci-libs/nibabel/nibabel-2.5.1.ebuild
new file mode 100644
index 0..a76565117
--- /dev/null
+++ b/sci-libs/nibabel/nibabel-2.5.1.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Access a cacophony of neuro-imaging file formats"
+HOMEPAGE="http://nipy.org/nibabel/;
+SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+KEYWORDS="~amd64 ~x86"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE="dicom doc test"
+
+RDEPEND="
+   dev-python/numpy[${PYTHON_USEDEP}]
+   sci-libs/scipy[${PYTHON_USEDEP}]
+   dev-python/mock[${PYTHON_USEDEP}]
+   dicom? (
+   sci-libs/pydicom[${PYTHON_USEDEP}]
+   dev-python/pillow[${PYTHON_USEDEP}]
+   )
+"
+DEPEND="
+   dev-python/setuptools[${PYTHON_USEDEP}]
+   test? (
+   ${RDEPEND}
+   dev-python/nose[${PYTHON_USEDEP}]
+   )
+   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
+"
+
+python_test() {
+   cd "${BUILD_DIR}" || die
+   echo "backend: Agg" > matplotlibrc
+   MPLCONFIGDIR=. nosetests || die
+}

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2018-12-31 Thread Horea Christian 
commit: 4d0643b56a624b1cbd9c8bebdca0132798ad839f
Author: Horea Christian  yandex  com>
AuthorDate: Mon Dec 31 08:05:31 2018 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Dec 31 08:05:31 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=4d0643b5

sci-libs/nibabel: PYTHON_COMPAT and EAPI bump

Package-Manager: Portage-2.3.52, Repoman-2.3.12
Signed-off-by: Horea Christian  yandex.com>

 sci-libs/nibabel/nibabel-.ebuild | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-.ebuild 
b/sci-libs/nibabel/nibabel-.ebuild
index 1fe4bf5a5..ab88031a7 100644
--- a/sci-libs/nibabel/nibabel-.ebuild
+++ b/sci-libs/nibabel/nibabel-.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
 
 inherit distutils-r1 git-r3

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2018-12-30 Thread Horea Christian 
commit: 6ae04d24faeac75edfa0a900fe193269c32890ff
Author: Horea Christian  yandex  com>
AuthorDate: Mon Dec 31 05:40:17 2018 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Dec 31 05:40:17 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=6ae04d24

sci-libs/nibabel: version bump

Signed-off-by: Horea Christian  yandex.com>
Package-Manager: Portage-2.3.52, Repoman-2.3.12

 sci-libs/nibabel/nibabel-2.3.1.ebuild | 43 +++
 1 file changed, 43 insertions(+)

diff --git a/sci-libs/nibabel/nibabel-2.3.1.ebuild 
b/sci-libs/nibabel/nibabel-2.3.1.ebuild
new file mode 100644
index 0..4018c7f41
--- /dev/null
+++ b/sci-libs/nibabel/nibabel-2.3.1.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Access a cacophony of neuro-imaging file formats"
+HOMEPAGE="http://nipy.org/nibabel/;
+SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+KEYWORDS="~amd64 ~x86"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE="dicom doc test"
+
+RDEPEND="
+   dev-python/numpy[${PYTHON_USEDEP}]
+   sci-libs/scipy[${PYTHON_USEDEP}]
+   dev-python/mock[${PYTHON_USEDEP}]
+   dicom? (
+   sci-libs/pydicom[${PYTHON_USEDEP}]
+   dev-python/pillow[${PYTHON_USEDEP}]
+   )
+   "
+
+DEPEND="
+   dev-python/setuptools[${PYTHON_USEDEP}]
+   test? (
+   ${RDEPEND}
+   dev-python/nose[${PYTHON_USEDEP}]
+   )
+   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
+   "
+
+python_test() {
+   cd "${BUILD_DIR}" || die
+   echo "backend: Agg" > matplotlibrc
+   MPLCONFIGDIR=. nosetests || die
+}

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2018-12-30 Thread Horea Christian 
commit: ff908446fc453f2bf2746ec68fea85f4d4ba69c9
Author: Horea Christian  yandex  com>
AuthorDate: Mon Dec 31 03:51:35 2018 +
Commit: Horea Christian  gmail  com>
CommitDate: Mon Dec 31 03:51:35 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ff908446

sci-libs/nibabel: removed deprecated version

Signed-off-by: Horea Christian  yandex.com>
Package-Manager: Portage-2.3.52, Repoman-2.3.12

 sci-libs/nibabel/nibabel-1.3.0.ebuild | 44 ---
 1 file changed, 44 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-1.3.0.ebuild 
b/sci-libs/nibabel/nibabel-1.3.0.ebuild
deleted file mode 100644
index 836f2e65a..0
--- a/sci-libs/nibabel/nibabel-1.3.0.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python{2_7,3_4} )
-
-inherit distutils-r1
-
-DESCRIPTION="Access a cacophony of neuro-imaging file formats"
-HOMEPAGE="http://nipy.org/nibabel/;
-SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
-
-KEYWORDS="~amd64 ~x86"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE="dicom doc test"
-
-RDEPEND="
-   dev-python/numpy[${PYTHON_USEDEP}]
-   sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/mock[${PYTHON_USEDEP}]
-   dicom? (
-   sci-libs/pydicom[${PYTHON_USEDEP}]
-   dev-python/pillow[${PYTHON_USEDEP}]
-   )
-   "
-
-DEPEND="
-   dev-python/setuptools[${PYTHON_USEDEP}]
-   test? (
-   ${RDEPEND}
-   dev-python/nose[${PYTHON_USEDEP}]
-   )
-   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-   "
-
-python_test() {
-   distutils-r1_install_for_testing
-   cd "${BUILD_DIR}" || die
-   echo "backend: Agg" > matplotlibrc
-   MPLCONFIGDIR=. nosetests || die
-}

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2018-07-31 Thread Horea Christian 
commit: 3fd203a789a08050fc4801d4c2c4ca9d3f40de24
Author: Horea Christian  yandex  com>
AuthorDate: Tue Jul 31 14:14:03 2018 +
Commit: Horea Christian  gmail  com>
CommitDate: Tue Jul 31 14:14:03 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=3fd203a7

sci-libs/nibabel: version bump

Package-Manager: Portage-2.3.44, Repoman-2.3.10

 sci-libs/nibabel/nibabel-2.3.0.ebuild | 44 +++
 1 file changed, 44 insertions(+)

diff --git a/sci-libs/nibabel/nibabel-2.3.0.ebuild 
b/sci-libs/nibabel/nibabel-2.3.0.ebuild
new file mode 100644
index 0..d25151e1a
--- /dev/null
+++ b/sci-libs/nibabel/nibabel-2.3.0.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+
+inherit distutils-r1
+
+DESCRIPTION="Access a cacophony of neuro-imaging file formats"
+HOMEPAGE="http://nipy.org/nibabel/;
+SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+KEYWORDS="~amd64 ~x86"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE="dicom doc test"
+
+RDEPEND="
+   dev-python/numpy[${PYTHON_USEDEP}]
+   sci-libs/scipy[${PYTHON_USEDEP}]
+   dev-python/mock[${PYTHON_USEDEP}]
+   dicom? (
+   sci-libs/pydicom[${PYTHON_USEDEP}]
+   dev-python/pillow[${PYTHON_USEDEP}]
+   )
+   "
+
+DEPEND="
+   dev-python/setuptools[${PYTHON_USEDEP}]
+   test? (
+   ${RDEPEND}
+   dev-python/nose[${PYTHON_USEDEP}]
+   )
+   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
+   "
+
+python_test() {
+   distutils-r1_install_for_testing
+   cd "${BUILD_DIR}" || die
+   echo "backend: Agg" > matplotlibrc
+   MPLCONFIGDIR=. nosetests || die
+}

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2018-07-27 Thread Horea Christian 
commit: ffcf3f19e5ef9de19fe41eb1ee1e759091c4f8da
Author: Horea Christian  yandex  com>
AuthorDate: Fri Jul 27 15:42:11 2018 +
Commit: Horea Christian  gmail  com>
CommitDate: Fri Jul 27 15:42:11 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ffcf3f19

sci-libs/nibabel: EAPI and PYTHON_COMPAT bump

Package-Manager: Portage-2.3.43, Repoman-2.3.10

 sci-libs/nibabel/nibabel-2.1.0.ebuild | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-2.1.0.ebuild 
b/sci-libs/nibabel/nibabel-2.1.0.ebuild
index 71dc0fff3..d25151e1a 100644
--- a/sci-libs/nibabel/nibabel-2.1.0.ebuild
+++ b/sci-libs/nibabel/nibabel-2.1.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
+EAPI=7
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
 
 inherit distutils-r1

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2017-08-24 Thread Benda XU 
commit: bc5aa0fa1a45eae0e39c4f1a5d419d4f931dae64
Author: Horea Christian  yandex  com>
AuthorDate: Mon Aug 21 16:09:01 2017 +
Commit: Benda XU  gentoo  org>
CommitDate: Fri Aug 25 04:02:51 2017 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=bc5aa0fa

sci-libs/nibabel: fixed indentation

Package-Manager: Portage-2.3.8, Repoman-2.3.3

 sci-libs/nibabel/metadata.xml | 32 
 1 file changed, 16 insertions(+), 16 deletions(-)

diff --git a/sci-libs/nibabel/metadata.xml b/sci-libs/nibabel/metadata.xml
index be9e6a4cc..f2e7dfe11 100644
--- a/sci-libs/nibabel/metadata.xml
+++ b/sci-libs/nibabel/metadata.xml
@@ -1,25 +1,25 @@
 
 http://www.gentoo.org/dtd/metadata.dtd;>
 
-  
-horea.chr...@gmail.com
-Horea Christian
-  
-  
-s...@gentoo.org
-Gentoo Science Project
-  
-  
+   
+   horea.chr...@gmail.com
+   Horea Christian
+   
+   
+   s...@gentoo.org
+   Gentoo Science Project
+   
+   
The package provides read and write access to some common medical and
neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), 
GIFTI,
NIfTI1, MINC, MGH and ECAT as well as PAR/REC. It can read and write 
Freesurfer
geometry, and read Freesurfer morphometry and annotation files. There 
is some
very limited support for DICOM. NiBabel is the successor of PyNIfTI.
-  
-  
-Adds limited read support for the DICOM imaging 
format.
-  
-  
-nipy/nibabel
-  
+   
+   
+   Adds limited read support for the DICOM 
imaging format.
+   
+   
+   nipy/nibabel
+

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2016-10-12 Thread Marius Brehler 
commit: d1dff69b7ea31fe9ac6e2e457533b25d4f8e0224
Author: Horea Christian  yandex  com>
AuthorDate: Wed Sep 28 18:41:27 2016 +
Commit: Marius Brehler  linux  sungazer  de>
CommitDate: Wed Sep 28 18:41:27 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=d1dff69b

sci-libs/nibabel: updted test depenencies, python compatibility, EAPI (#687)

Package-Manager: portage-2.3.1

 sci-libs/nibabel/nibabel-1.3.0.ebuild | 11 +++
 sci-libs/nibabel/nibabel-2.0.1.ebuild |  9 ++---
 sci-libs/nibabel/nibabel-2.1.0.ebuild |  9 ++---
 sci-libs/nibabel/nibabel-.ebuild  |  9 ++---
 4 files changed, 25 insertions(+), 13 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-1.3.0.ebuild 
b/sci-libs/nibabel/nibabel-1.3.0.ebuild
index 151cca9..a78e458 100644
--- a/sci-libs/nibabel/nibabel-1.3.0.ebuild
+++ b/sci-libs/nibabel/nibabel-1.3.0.ebuild
@@ -2,9 +2,9 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI="6"
+EAPI=6
 
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python{2_7,3_4} )
 
 inherit distutils-r1
 
@@ -21,7 +21,7 @@ IUSE="dicom doc test"
 RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/nose[${PYTHON_USEDEP}]
+   dev-python/mock[${PYTHON_USEDEP}]
dicom? (
sci-libs/pydicom[${PYTHON_USEDEP}]
dev-python/pillow[${PYTHON_USEDEP}]
@@ -30,7 +30,10 @@ RDEPEND="
 
 DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
-   test? ( ${RDEPEND} )
+   test? (
+   ${RDEPEND}
+   dev-python/nose[${PYTHON_USEDEP}]
+   )
doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
"
 

diff --git a/sci-libs/nibabel/nibabel-2.0.1.ebuild 
b/sci-libs/nibabel/nibabel-2.0.1.ebuild
index 84e8c98..29d75a7 100644
--- a/sci-libs/nibabel/nibabel-2.0.1.ebuild
+++ b/sci-libs/nibabel/nibabel-2.0.1.ebuild
@@ -2,7 +2,7 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI="6"
+EAPI=6
 
 PYTHON_COMPAT=( python{2_7,3_4,3_5} )
 
@@ -21,7 +21,7 @@ IUSE="dicom doc test"
 RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/nose[${PYTHON_USEDEP}]
+   dev-python/mock[${PYTHON_USEDEP}]
dicom? (
sci-libs/pydicom[${PYTHON_USEDEP}]
dev-python/pillow[${PYTHON_USEDEP}]
@@ -30,7 +30,10 @@ RDEPEND="
 
 DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
-   test? ( ${RDEPEND} )
+   test? (
+   ${RDEPEND}
+   dev-python/nose[${PYTHON_USEDEP}]
+   )
doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
"
 

diff --git a/sci-libs/nibabel/nibabel-2.1.0.ebuild 
b/sci-libs/nibabel/nibabel-2.1.0.ebuild
index 84e8c98..29d75a7 100644
--- a/sci-libs/nibabel/nibabel-2.1.0.ebuild
+++ b/sci-libs/nibabel/nibabel-2.1.0.ebuild
@@ -2,7 +2,7 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI="6"
+EAPI=6
 
 PYTHON_COMPAT=( python{2_7,3_4,3_5} )
 
@@ -21,7 +21,7 @@ IUSE="dicom doc test"
 RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/nose[${PYTHON_USEDEP}]
+   dev-python/mock[${PYTHON_USEDEP}]
dicom? (
sci-libs/pydicom[${PYTHON_USEDEP}]
dev-python/pillow[${PYTHON_USEDEP}]
@@ -30,7 +30,10 @@ RDEPEND="
 
 DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
-   test? ( ${RDEPEND} )
+   test? (
+   ${RDEPEND}
+   dev-python/nose[${PYTHON_USEDEP}]
+   )
doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
"
 

diff --git a/sci-libs/nibabel/nibabel-.ebuild 
b/sci-libs/nibabel/nibabel-.ebuild
index 7fd8f68..2004479 100644
--- a/sci-libs/nibabel/nibabel-.ebuild
+++ b/sci-libs/nibabel/nibabel-.ebuild
@@ -2,7 +2,7 @@
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI="6"
+EAPI=6
 
 PYTHON_COMPAT=( python{2_7,3_4,3_5} )
 
@@ -21,7 +21,7 @@ KEYWORDS=""
 RDEPEND="
dev-python/numpy[${PYTHON_USEDEP}]
sci-libs/scipy[${PYTHON_USEDEP}]
-   dev-python/nose[${PYTHON_USEDEP}]
+   dev-python/mock[${PYTHON_USEDEP}]
dicom? (
sci-libs/pydicom[${PYTHON_USEDEP}]
dev-python/pillow[${PYTHON_USEDEP}]
@@ -30,7 +30,10 @@ RDEPEND="
 
 DEPEND="
dev-python/setuptools[${PYTHON_USEDEP}]
-   test? ( ${RDEPEND} )
+   test? (
+   ${RDEPEND}
+   dev-python/nose[${PYTHON_USEDEP}]
+   )
doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
"

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/, sci-libs/pydicom/

2016-09-05 Thread Christoph Junghans 
commit: bee99748f997e6ea0529e60d91b950174dfab9eb
Author: Horea Christian  yandex  com>
AuthorDate: Mon Sep  5 19:02:11 2016 +
Commit: Christoph Junghans  gentoo  org>
CommitDate: Mon Sep  5 19:02:11 2016 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=bee99748

Nibabel (#669)

* sci-libs/pydicom: updated EAPI and added python 3.5 compatibility

Package-Manager: portage-2.3.0

* sci-libs/nibabel: version bump, updated EAPI, added python 3.5 compat

Package-Manager: portage-2.3.0

* sci-libs/nibabel: updated EAPI, copyright, and python compat

Package-Manager: portage-2.3.0

 sci-libs/nibabel/nibabel-1.3.0.ebuild   | 4 ++--
 sci-libs/nibabel/nibabel-2.0.1.ebuild   | 6 +++---
 sci-libs/nibabel/{nibabel-1.3.0.ebuild => nibabel-2.1.0.ebuild} | 6 +++---
 sci-libs/nibabel/nibabel-.ebuild| 6 +++---
 sci-libs/pydicom/pydicom-0.9.8.ebuild   | 6 +++---
 sci-libs/pydicom/pydicom-0.9.9.ebuild   | 6 +++---
 sci-libs/pydicom/pydicom-.ebuild| 6 +++---
 7 files changed, 20 insertions(+), 20 deletions(-)

diff --git a/sci-libs/nibabel/nibabel-1.3.0.ebuild 
b/sci-libs/nibabel/nibabel-1.3.0.ebuild
index 1526631..151cca9 100644
--- a/sci-libs/nibabel/nibabel-1.3.0.ebuild
+++ b/sci-libs/nibabel/nibabel-1.3.0.ebuild
@@ -1,8 +1,8 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI="5"
+EAPI="6"
 
 PYTHON_COMPAT=( python2_7 )
 

diff --git a/sci-libs/nibabel/nibabel-2.0.1.ebuild 
b/sci-libs/nibabel/nibabel-2.0.1.ebuild
index af353f2..84e8c98 100644
--- a/sci-libs/nibabel/nibabel-2.0.1.ebuild
+++ b/sci-libs/nibabel/nibabel-2.0.1.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI="5"
+EAPI="6"
 
-PYTHON_COMPAT=( python2_7 python3_4 )
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
 
 inherit distutils-r1
 

diff --git a/sci-libs/nibabel/nibabel-1.3.0.ebuild 
b/sci-libs/nibabel/nibabel-2.1.0.ebuild
similarity index 90%
copy from sci-libs/nibabel/nibabel-1.3.0.ebuild
copy to sci-libs/nibabel/nibabel-2.1.0.ebuild
index 1526631..84e8c98 100644
--- a/sci-libs/nibabel/nibabel-1.3.0.ebuild
+++ b/sci-libs/nibabel/nibabel-2.1.0.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI="5"
+EAPI="6"
 
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
 
 inherit distutils-r1
 

diff --git a/sci-libs/nibabel/nibabel-.ebuild 
b/sci-libs/nibabel/nibabel-.ebuild
index d521699..7fd8f68 100644
--- a/sci-libs/nibabel/nibabel-.ebuild
+++ b/sci-libs/nibabel/nibabel-.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI="5"
+EAPI="6"
 
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python{2_7,3_4,3_5} )
 
 inherit distutils-r1 git-r3
 

diff --git a/sci-libs/pydicom/pydicom-0.9.8.ebuild 
b/sci-libs/pydicom/pydicom-0.9.8.ebuild
index 44a0bae..4b84c99 100644
--- a/sci-libs/pydicom/pydicom-0.9.8.ebuild
+++ b/sci-libs/pydicom/pydicom-0.9.8.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=5
+EAPI=6
 
-PYTHON_COMPAT=( python2_7 )
+PYTHON_COMPAT=( python{2_7,3_3,3_4,3_5} )
 
 inherit distutils-r1
 

diff --git a/sci-libs/pydicom/pydicom-0.9.9.ebuild 
b/sci-libs/pydicom/pydicom-0.9.9.ebuild
index ec432d6..de647e0 100644
--- a/sci-libs/pydicom/pydicom-0.9.9.ebuild
+++ b/sci-libs/pydicom/pydicom-0.9.9.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI="5"
+EAPI=6
 
-PYTHON_COMPAT=( python2_7 python3_4 )
+PYTHON_COMPAT=( python{2_7,3_3,3_4,3_5} )
 
 inherit distutils-r1
 

diff --git a/sci-libs/pydicom/pydicom-.ebuild 
b/sci-libs/pydicom/pydicom-.ebuild
index d992856..1d79900 100644
--- a/sci-libs/pydicom/pydicom-.ebuild
+++ b/sci-libs/pydicom/pydicom-.ebuild
@@ -1,10 +1,10 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2016 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Id$
 
-EAPI=5
+EAPI=6
 
-PYTHON_COMPAT=( python2_7 python3_3 python3_4 )
+PYTHON_COMPAT=( python{2_7,3_3,3_4,3_5} )
 
 inherit distutils-r1 git-r3

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2015-09-01 Thread Justin Lecher 
commit: 8b3816cb8ff03dc927608cc5575e4c079eaa3728
Author: Robbert Harms  xkls  nl>
AuthorDate: Sun Aug 30 07:31:32 2015 +
Commit: Justin Lecher  gentoo  org>
CommitDate: Sun Aug 30 07:31:32 2015 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=8b3816cb

Version bump, adds nibabel-2.0.1. Also, version-2.0.1 now has python3_4 as 
python version dependency.

 sci-libs/nibabel/nibabel-2.0.1.ebuild | 42 +++
 1 file changed, 42 insertions(+)

diff --git a/sci-libs/nibabel/nibabel-2.0.1.ebuild 
b/sci-libs/nibabel/nibabel-2.0.1.ebuild
new file mode 100644
index 000..6d2f25d
--- /dev/null
+++ b/sci-libs/nibabel/nibabel-2.0.1.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="5"
+
+PYTHON_COMPAT=( python2_7 python3_4 )
+
+inherit distutils-r1
+
+DESCRIPTION="Access a cacophony of neuro-imaging file formats"
+HOMEPAGE="http://nipy.org/nibabel/;
+SRC_URI="https://github.com/nipy/nibabel/archive/${PV}.tar.gz -> ${P}.tar.gz"
+
+KEYWORDS="~amd64 ~x86"
+
+LICENSE="MIT"
+SLOT="0"
+IUSE="dicom doc test"
+
+RDEPEND="
+   dev-python/numpy[${PYTHON_USEDEP}]
+   sci-libs/scipy[${PYTHON_USEDEP}]
+   dev-python/nose[${PYTHON_USEDEP}]
+   dicom? (
+   sci-libs/pydicom[${PYTHON_USEDEP}]
+   virtual/python-imaging[${PYTHON_USEDEP}]
+   )
+   "
+
+DEPEND="
+   dev-python/setuptools[${PYTHON_USEDEP}]
+   test? ( ${RDEPEND} )
+   doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
+   "
+
+python_test() {
+   distutils-r1_install_for_testing
+   cd "${BUILD_DIR}" || die
+   echo "backend: Agg" > matplotlibrc
+   MPLCONFIGDIR=. nosetests || die
+}

[gentoo-commits] proj/sci:master commit in: sci-libs/nibabel/

2015-06-15 Thread Justin Lecher 
commit: 7ff729074e0b2e9a0d9abbd8bd046137347c9525
Author: Horea Christian h.chr AT mail DOT ru
AuthorDate: Thu Jun 11 22:25:22 2015 +
Commit: Justin Lecher jlec AT gentoo DOT org
CommitDate: Thu Jun 11 22:25:22 2015 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=7ff72907

downloading tarball instead of zip

Package-Manager: portage-2.2.20

 sci-libs/nibabel/ChangeLog| 6 --
 sci-libs/nibabel/nibabel-1.3.0.ebuild | 4 ++--
 2 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/sci-libs/nibabel/ChangeLog b/sci-libs/nibabel/ChangeLog
index c31cec7..237f97e 100644
--- a/sci-libs/nibabel/ChangeLog
+++ b/sci-libs/nibabel/ChangeLog
@@ -1,8 +1,10 @@
 # ChangeLog for sci-libs/nibabel
-# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+  11 Jun 2015; Chymera chym...@gentoo.org nibabel-1.3.0.ebuild:
+  now downloading as tarball
+
   06 Jan 2014; Justin Lecher j...@gentoo.org nibabel-1.3.0.ebuild,
   nibabel-.ebuild, metadata.xml:
   Switch from git-2 to git-r3
-

diff --git a/sci-libs/nibabel/nibabel-1.3.0.ebuild 
b/sci-libs/nibabel/nibabel-1.3.0.ebuild
index c3d5d27..886434f 100644
--- a/sci-libs/nibabel/nibabel-1.3.0.ebuild
+++ b/sci-libs/nibabel/nibabel-1.3.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2014 Gentoo Foundation
+# Copyright 1999-2015 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 # $Header: $
 
@@ -10,7 +10,7 @@ inherit distutils-r1
 
 DESCRIPTION=Access a cacophony of neuro-imaging file formats
 HOMEPAGE=http://nipy.org/nibabel/;
-SRC_URI=https://github.com/nipy/nibabel/archive/${PV}.zip;
+SRC_URI=https://github.com/nipy/nibabel/archive/${PV}.tar.gz - ${P}.tar.gz
 
 KEYWORDS=~amd64 ~x86