[SOLVED] Re: [gentoo-user] 6.1.53-gentoo-r1 kernel not booting
On 10/8/23 06:34, Neil Bothwick wrote: On Sat, 7 Oct 2023 12:13:58 -0400, Valmor F. de Almeida wrote: 2) make oldconfig in the new kernel directory for linux-6.1.53-gentoo-r1 • Mitigations for speculative execution vulnerabilities * Mitigations for speculative execution vulnerabilities (SPECULATION_MITIGATIONS) [Y/n/?] y Remove the kernel mapping in user mode (PAGE_TABLE_ISOLATION) [Y/n/?] y Avoid speculative indirect branches in kernel (RETPOLINE) [Y/n/?] y Enable return-thunks (RETHUNK) [Y/n/?] y Enable UNRET on kernel entry (CPU_UNRET_ENTRY) [Y/n/?] y Enable IBPB on kernel entry (CPU_IBPB_ENTRY) [Y/n/?] y Enable IBRS on kernel entry (CPU_IBRS_ENTRY) [Y/n/?] y Up to here default is picked automatically; I don't have a choice. Those are settings you already have in your existing confid, shown to give context to the following NEW settings. You can change them, but with make config, not oldconfig. After some distractions... For the record. This problem solved itself with the 6.1.57-gentoo kernel. Just used the config from 6.1.41-gentoo in make oldconfig. Thanks for the help. -- Valmor
Re: [gentoo-user] 6.1.53-gentoo-r1 kernel not booting
On 10/7/23 12:13, Valmor F. de Almeida wrote: On 10/7/23 08:09, Peter Böhm wrote: Am Samstag, 7. Oktober 2023, 08:28:01 CEST schrieb Valmor de Almeida: [snip] For me the following questions would arise: a) How did you install the kernel 6.1.41 ? (genkernel; dist-kernel; manual approach) Sorry I described the install for the 6.1.53-gentoo-r1 kernel. The install for 6.1.41 was similar but I used the config file from the earlier kernel which is 6.1.38 to start make oldconfig. -- Valmor manual: 1) portage sync 2) make oldconfig in the new kernel directory for linux-6.1.53-gentoo-r1 • Mitigations for speculative execution vulnerabilities * Mitigations for speculative execution vulnerabilities (SPECULATION_MITIGATIONS) [Y/n/?] y Remove the kernel mapping in user mode (PAGE_TABLE_ISOLATION) [Y/n/?] y Avoid speculative indirect branches in kernel (RETPOLINE) [Y/n/?] y Enable return-thunks (RETHUNK) [Y/n/?] y Enable UNRET on kernel entry (CPU_UNRET_ENTRY) [Y/n/?] y Enable IBPB on kernel entry (CPU_IBPB_ENTRY) [Y/n/?] y Enable IBRS on kernel entry (CPU_IBRS_ENTRY) [Y/n/?] y Up to here default is picked automatically; I don't have a choice. Next, I have tried with and without accepting the NEW features. Mitigate speculative RAS overflow on AMD (CPU_SRSO) [Y/n/?] (NEW) Mitigate Straight-Line-Speculation (SLS) [N/y/?] n Force GDS Mitigation (GDS_FORCE_MITIGATION) [N/y/?] (NEW) 3) make menuconfig 4) make && make modules_install 5) make install 6) grub-mkconfig -o /boot/grub/grub.cfg 7) reboot b) Did you make any kernel configuration changes in your 6.1.41 ? no; I use what is in /boot -> ls /boot/ config-6.1.41-gentoo grub/ System.map-6.1.41-gentoo vmlinuz-6.1.41-gentoo config-6.1.53-gentoo-r1 lost+found/ System.map-6.1.53-gentoo-r1 vmlinuz-6.1.53-gentoo-r1 c) Do you use a bootmanager ? (which ?; grub, refind ?) I use grub-2 * sys-boot/grub Latest version available: 2.06-r9 Latest version installed: 2.06-r9 d) How did you update to 6.1.53 ? (every step) -> revdep-rebuild --ignore -> emerge --depclean -> eclean distfiles -> eclean packages -> emerge @preserved-rebuild -> emerge --sync -> etc-update -> env-update (run a script to source profile) -> emerge -vp --update --newuse --deep --tree --with-bdeps=y @world check conflicts etc., fetch files, then run without -vp To better understand your system, I would look at the output of "parted -l" (complete), "dmesg" (complete), "lspci -k" and "emerge --info" (after you have booted 6.1.41). To clarify all this here via the mailing list might be difficult; therefore I would suggest to create a thread in our Gentoo support forum: I will give it shot. https://forums.gentoo.org/ (I am there also; but we have also a lot of great experts there) If you create a thread in our forum, then please use wgetpaste for big files: https://wiki.gentoo.org/wiki/Wgetpaste Greetings, Peter Thanks, -- Valmor
Re: [gentoo-user] 6.1.53-gentoo-r1 kernel not booting
On 10/7/23 08:09, Peter Böhm wrote: Am Samstag, 7. Oktober 2023, 08:28:01 CEST schrieb Valmor de Almeida: -> mount /dev/nvme0n1p4 /mnt/gentoo mout: /mnt/gentoo: can't read superblock on /dev/nvme0n1p4. Maybe we need to dig a little deeper. Maybe you are using LVM (or have an encrypted root partition; or both). No LVM, and no encryption. -> dmesg [snip] nvme nvme0: controller is down; will reset: nvme nvme0: Does your device have a faulty power saving mode enabled? [snip] EXT4-fs (nvme0n1p4): unable to read superblock I am still able to boot with the old kernel 6-1-41-gentoo. Does this mean I may have a hardware problem with the NVMe drive? I dont think you have a hardware problem because with 6.41 you have no problems. It seems like it: -> smartctl --health /dev/nvme0n1 smartctl 7.3 2022-02-28 r5338 [x86_64-linux-6.1.41-gentoo] (local build) Copyright (C) 2002-22, Bruce Allen, Christian Franke, www.smartmontools.org === START OF SMART DATA SECTION === SMART overall-health self-assessment test result: PASSED For me the following questions would arise: a) How did you install the kernel 6.1.41 ? (genkernel; dist-kernel; manual approach) manual: 1) portage sync 2) make oldconfig in the new kernel directory for linux-6.1.53-gentoo-r1 • Mitigations for speculative execution vulnerabilities * Mitigations for speculative execution vulnerabilities (SPECULATION_MITIGATIONS) [Y/n/?] y Remove the kernel mapping in user mode (PAGE_TABLE_ISOLATION) [Y/n/?] y Avoid speculative indirect branches in kernel (RETPOLINE) [Y/n/?] y Enable return-thunks (RETHUNK) [Y/n/?] y Enable UNRET on kernel entry (CPU_UNRET_ENTRY) [Y/n/?] y Enable IBPB on kernel entry (CPU_IBPB_ENTRY) [Y/n/?] y Enable IBRS on kernel entry (CPU_IBRS_ENTRY) [Y/n/?] y Up to here default is picked automatically; I don't have a choice. Next, I have tried with and without accepting the NEW features. Mitigate speculative RAS overflow on AMD (CPU_SRSO) [Y/n/?] (NEW) Mitigate Straight-Line-Speculation (SLS) [N/y/?] n Force GDS Mitigation (GDS_FORCE_MITIGATION) [N/y/?] (NEW) 3) make menuconfig 4) make && make modules_install 5) make install 6) grub-mkconfig -o /boot/grub/grub.cfg 7) reboot b) Did you make any kernel configuration changes in your 6.1.41 ? no; I use what is in /boot -> ls /boot/ config-6.1.41-gentoo grub/System.map-6.1.41-gentoo vmlinuz-6.1.41-gentoo config-6.1.53-gentoo-r1 lost+found/ System.map-6.1.53-gentoo-r1 vmlinuz-6.1.53-gentoo-r1 c) Do you use a bootmanager ? (which ?; grub, refind ?) I use grub-2 * sys-boot/grub Latest version available: 2.06-r9 Latest version installed: 2.06-r9 d) How did you update to 6.1.53 ? (every step) -> revdep-rebuild --ignore -> emerge --depclean -> eclean distfiles -> eclean packages -> emerge @preserved-rebuild -> emerge --sync -> etc-update -> env-update (run a script to source profile) -> emerge -vp --update --newuse --deep --tree --with-bdeps=y @world check conflicts etc., fetch files, then run without -vp To better understand your system, I would look at the output of "parted -l" (complete), "dmesg" (complete), "lspci -k" and "emerge --info" (after you have booted 6.1.41). To clarify all this here via the mailing list might be difficult; therefore I would suggest to create a thread in our Gentoo support forum: I will give it shot. https://forums.gentoo.org/ (I am there also; but we have also a lot of great experts there) If you create a thread in our forum, then please use wgetpaste for big files: https://wiki.gentoo.org/wiki/Wgetpaste Greetings, Peter Thanks, -- Valmor
Re: [gentoo-user] 6.1.53-gentoo-r1 kernel not booting
On 10/2/23 05:39, Peter Böhm wrote: If your system is working with your old kernel I dont think it could be a hardware problem. If your kernel config is the same then I dont think it is a problem with the kernel. My questions would be: Which CPU do you use ? Have you emerged a new microcode for CPU ? Example: Intel has disabled avx in some CPUs via microcode update. Now some applications may throw an illegal instruction ... and your problem description look like that only some programs have a problem. You could test it by compiling your old kernel again ... you should have then the same problem with it (of course you backup your old kernel before). Regards, Peter The config file is not the same but I have played with what has changed and I don't seem to be able to fix the problem; no boot. -> cat /proc/cpuinfo processor : 0 vendor_id : GenuineIntel cpu family : 6 model : 158 model name : Intel(R) Core(TM) i7-7700HQ CPU @ 2.80GHz stepping: 9 microcode : 0x84 cpu MHz : 3680.490 cache size : 6144 KB [snip] There are 8 cores. There may have been a microcode emerge from dependencies; I don't emerge directly. I do agree with you: if I try to recompile the working kernel it will not boot. However I am not willing to try just right now and having to troubleshoot a broken system. Thanks, -- Valmor
Re: [gentoo-user] 6.1.53-gentoo-r1 kernel not booting
On 10/2/23 04:44, Lee wrote: I found this: https://www.reddit.com/r/Gentoo/comments/168qrbx/gentoosources_6146_kernel_reports_io_error/ <https://www.reddit.com/r/Gentoo/comments/168qrbx/gentoosources_6146_kernel_reports_io_error/> Lee This is probably it. Thanks. -- Valmor On Mon, Oct 2, 2023, 12:14 AM Valmor F. de Almeida <mailto:val.gen...@gmail.com>> wrote: On 10/1/23 20:29, Håkon Alstadheim wrote: > > Den 01.10.2023 21:31, skrev Frank Steinmetzger: >> Am Sat, Sep 30, 2023 at 11:25:46PM +0200 schrieb Håkon Alstadheim: >>> Den 30.09.2023 22:57, skrev Valmor F. de Almeida: >>>> Hello, >>>> >>>> For a while now (3 weeks or so) I have been upgrading the linux kernel >>>> on a Dell XPS laptop starting from 6.1.41-gentoo (which is my current >>>> working kernel) to 6.1.53-gentoo-r1. No kernel I have built since is >>>> able to boot. I have been following the same method for many years: >>>> make >>>> oldconfig, etc... >>>> >>>> The booting error starts at: >>>> >>>> [snip] >>>> >>>> * INIT: Entering runlevel: 3 >>>> [snip] >>>> * Starting cronie ... >>>> * Starting DHCP Client Daemon ... >>>> * Starting laptop_mode ... >>>> * Mounting network filesystems ... >>>> /etc/init.d/netmount: line 45 /lib/rc/bin/ewend: Input/output error >>>> /lib/rc/sh/rc-cgroup.sh: line 184: rmdir: command not found >>>> INIT: >>>> INIT: cannot execute "/sbin/agetty" >>>> INIT: cannot execute "/sbin/agetty" >>>> INIT: cannot execute "/sbin/agetty" >>>> >>>> >>> Can you show /etc/fstab and the console-log for the entire boot? >>> Seems /sbin >>> is not readable. You sure you have the kernel modules loaded? Are you >>> using >>> an initramfs? If so, does that build without errors ? >> The input/output error – to me – indicates a hardware problem. When you >> mounted the FS by hand, can you read ewend? For instance with md5sum. >> > except it boots ok with older kernels. When you've eliminated the > impossible, whatever remains, however improbable has to be a kernel > config change (missing or erroneous and unintended) , or > initramfs failing to build/install correctly. Check error output from > your kernel build. > Right it boots with 6.1.41. I started again from the config of 6.1.41 and unset SRSO: -> diff linux/.config /boot/config-6.1.41-gentoo 3c3 < # Linux/x86 6.1.53-gentoo-r1 Kernel Configuration --- > # Linux/x86 6.1.41-gentoo Kernel Configuration 5c5 < CONFIG_CC_VERSION_TEXT="gcc (Gentoo 13.2.1_p20230826 p7) 13.2.1 20230826" --- > CONFIG_CC_VERSION_TEXT="gcc (Gentoo 12.3.1_p20230526 p2) 12.3.1 20230526" 7c7 < CONFIG_GCC_VERSION=130201 --- > CONFIG_GCC_VERSION=120301 455d454 < # CONFIG_CPU_SRSO is not set 457d455 < # CONFIG_GDS_FORCE_MITIGATION is not set 646d643 < CONFIG_ARCH_HAS_CPU_FINALIZE_INIT=y 3136d3132 < CONFIG_VIDEO_V4L2_SUBDEV_API=y 3139,3140d3134 < CONFIG_V4L2_FWNODE=m < CONFIG_V4L2_ASYNC=m 3236c3230,3233 < CONFIG_VIDEO_CAMERA_SENSOR=y --- > > # > # Camera sensor devices > # 3295a3293 > # end of Camera sensor devices Still no luck; kernel build has no errors. Boot hangs. Thanks for the replies. Maybe 6.2 will not have this problem for my system. -- Valmor
Re: [gentoo-user] 6.1.53-gentoo-r1 kernel not booting
On 10/1/23 20:29, Håkon Alstadheim wrote: Den 01.10.2023 21:31, skrev Frank Steinmetzger: Am Sat, Sep 30, 2023 at 11:25:46PM +0200 schrieb Håkon Alstadheim: Den 30.09.2023 22:57, skrev Valmor F. de Almeida: Hello, For a while now (3 weeks or so) I have been upgrading the linux kernel on a Dell XPS laptop starting from 6.1.41-gentoo (which is my current working kernel) to 6.1.53-gentoo-r1. No kernel I have built since is able to boot. I have been following the same method for many years: make oldconfig, etc... The booting error starts at: [snip] * INIT: Entering runlevel: 3 [snip] * Starting cronie ... * Starting DHCP Client Daemon ... * Starting laptop_mode ... * Mounting network filesystems ... /etc/init.d/netmount: line 45 /lib/rc/bin/ewend: Input/output error /lib/rc/sh/rc-cgroup.sh: line 184: rmdir: command not found INIT: INIT: cannot execute "/sbin/agetty" INIT: cannot execute "/sbin/agetty" INIT: cannot execute "/sbin/agetty" Can you show /etc/fstab and the console-log for the entire boot? Seems /sbin is not readable. You sure you have the kernel modules loaded? Are you using an initramfs? If so, does that build without errors ? The input/output error – to me – indicates a hardware problem. When you mounted the FS by hand, can you read ewend? For instance with md5sum. except it boots ok with older kernels. When you've eliminated the impossible, whatever remains, however improbable has to be a kernel config change (missing or erroneous and unintended) , or initramfs failing to build/install correctly. Check error output from your kernel build. Right it boots with 6.1.41. I started again from the config of 6.1.41 and unset SRSO: -> diff linux/.config /boot/config-6.1.41-gentoo 3c3 < # Linux/x86 6.1.53-gentoo-r1 Kernel Configuration --- > # Linux/x86 6.1.41-gentoo Kernel Configuration 5c5 < CONFIG_CC_VERSION_TEXT="gcc (Gentoo 13.2.1_p20230826 p7) 13.2.1 20230826" --- > CONFIG_CC_VERSION_TEXT="gcc (Gentoo 12.3.1_p20230526 p2) 12.3.1 20230526" 7c7 < CONFIG_GCC_VERSION=130201 --- > CONFIG_GCC_VERSION=120301 455d454 < # CONFIG_CPU_SRSO is not set 457d455 < # CONFIG_GDS_FORCE_MITIGATION is not set 646d643 < CONFIG_ARCH_HAS_CPU_FINALIZE_INIT=y 3136d3132 < CONFIG_VIDEO_V4L2_SUBDEV_API=y 3139,3140d3134 < CONFIG_V4L2_FWNODE=m < CONFIG_V4L2_ASYNC=m 3236c3230,3233 < CONFIG_VIDEO_CAMERA_SENSOR=y --- > > # > # Camera sensor devices > # 3295a3293 > # end of Camera sensor devices Still no luck; kernel build has no errors. Boot hangs. Thanks for the replies. Maybe 6.2 will not have this problem for my system. -- Valmor
Re: [gentoo-user] 6.1.53-gentoo-r1 kernel not booting
On 10/1/23 07:29, Michael wrote: On Sunday, 1 October 2023 05:56:02 BST Valmor F. de Almeida wrote: On 9/30/23 17:25, Håkon Alstadheim wrote: Den 30.09.2023 22:57, skrev Valmor F. de Almeida: Hello, For a while now (3 weeks or so) I have been upgrading the linux kernel on a Dell XPS laptop starting from 6.1.41-gentoo (which is my current working kernel) to 6.1.53-gentoo-r1. No kernel I have built since is able to boot. I have been following the same method for many years: make oldconfig, etc... The booting error starts at: [snip] * INIT: Entering runlevel: 3 [snip] * Starting cronie ... * Starting DHCP Client Daemon ... * Starting laptop_mode ... * Mounting network filesystems ... /etc/init.d/netmount: line 45 /lib/rc/bin/ewend: Input/output error /lib/rc/sh/rc-cgroup.sh: line 184: rmdir: command not found INIT: INIT: cannot execute "/sbin/agetty" INIT: cannot execute "/sbin/agetty" INIT: cannot execute "/sbin/agetty" Can you show /etc/fstab and the console-log for the entire boot? Seems /sbin is not readable. You sure you have the kernel modules loaded? Are you using an initramfs? If so, does that build without errors ? Here is fstab: /dev/nvme0n1p2 /boot ext2defaults0 2 /dev/nvme0n1p3 noneswapsw 0 0 /dev/nvme0n1p4 / ext4noatime,discard 0 1 /dev/cdrom /mnt/cdrom autonoauto,user 0 0 I have not changed anything from 6.1.41-gentoo (which compiles and boots) except updating the config file for compiling the new kernel. Then I do: make && modules_install. Which runs without errors. After that: grub-mkconfig -o /boot/grub/grub.cfg. I am not using initramfs. I don't know how to save the boot messages; it seems that if I turn on the logger in openrc, it will log the openrc messages but not sysinit runlevels? Thanks, -- Valmor I think the error messages you're getting indicate inability to access your rootfs. Have you perhaps changed the fs drivers in the latest kernels, from built in to modules? Have you diff'ed your 6.1.41-gentoo .config file against the latest kernels' .config files to see what might have changed/missing? You can set up a netconsole to check boot time messages: https://www.kernel.org/doc/Documentation/networking/netconsole.txt https://wiki.ubuntu.com/Kernel/Netconsole In summary, build netconsole in the new kernel, or as a module, change GRUB's default CMDLINE from "quiet splash" to "debug" and add netconsole in the kernel command line: netconsole=@/,[PORT]@[DEST_IP] Then at the destination PC launch netcat/socat/telnet; e.g. nc -u -l -p [PORT] and reboot the PC you want to debug with the latest kernel, while watching the output on the destination PC's terminal with nc. Here is the diff for the config files: -> diff config /boot/config-6.1.41-gentoo 3c3 < # Linux/x86 6.1.53-gentoo-r1 Kernel Configuration --- > # Linux/x86 6.1.41-gentoo Kernel Configuration 5c5 < CONFIG_CC_VERSION_TEXT="gcc (Gentoo 13.2.1_p20230826 p7) 13.2.1 20230826" --- > CONFIG_CC_VERSION_TEXT="gcc (Gentoo 12.3.1_p20230526 p2) 12.3.1 20230526" 7c7 < CONFIG_GCC_VERSION=130201 --- > CONFIG_GCC_VERSION=120301 455d454 < CONFIG_CPU_SRSO=y 457d455 < # CONFIG_GDS_FORCE_MITIGATION is not set 646d643 < CONFIG_ARCH_HAS_CPU_FINALIZE_INIT=y 3136d3132 < CONFIG_VIDEO_V4L2_SUBDEV_API=y 3139,3140d3134 < CONFIG_V4L2_FWNODE=m < CONFIG_V4L2_ASYNC=m 3236c3230,3233 < CONFIG_VIDEO_CAMERA_SENSOR=y --- > > # > # Camera sensor devices > # 3295a3293 > # end of Camera sensor devices I guess I could explore some of this difference. I have not changed the way I compile the kernel and I typically try to have everything built in (only a few modules). Thanks for the netconsole info. -- Valmor
Re: [gentoo-user] 6.1.53-gentoo-r1 kernel not booting
On 9/30/23 17:25, Håkon Alstadheim wrote: Den 30.09.2023 22:57, skrev Valmor F. de Almeida: Hello, For a while now (3 weeks or so) I have been upgrading the linux kernel on a Dell XPS laptop starting from 6.1.41-gentoo (which is my current working kernel) to 6.1.53-gentoo-r1. No kernel I have built since is able to boot. I have been following the same method for many years: make oldconfig, etc... The booting error starts at: [snip] * INIT: Entering runlevel: 3 [snip] * Starting cronie ... * Starting DHCP Client Daemon ... * Starting laptop_mode ... * Mounting network filesystems ... /etc/init.d/netmount: line 45 /lib/rc/bin/ewend: Input/output error /lib/rc/sh/rc-cgroup.sh: line 184: rmdir: command not found INIT: INIT: cannot execute "/sbin/agetty" INIT: cannot execute "/sbin/agetty" INIT: cannot execute "/sbin/agetty" Can you show /etc/fstab and the console-log for the entire boot? Seems /sbin is not readable. You sure you have the kernel modules loaded? Are you using an initramfs? If so, does that build without errors ? Here is fstab: /dev/nvme0n1p2 /boot ext2defaults0 2 /dev/nvme0n1p3 noneswapsw 0 0 /dev/nvme0n1p4 / ext4noatime,discard 0 1 /dev/cdrom /mnt/cdrom autonoauto,user 0 0 I have not changed anything from 6.1.41-gentoo (which compiles and boots) except updating the config file for compiling the new kernel. Then I do: make && modules_install. Which runs without errors. After that: grub-mkconfig -o /boot/grub/grub.cfg. I am not using initramfs. I don't know how to save the boot messages; it seems that if I turn on the logger in openrc, it will log the openrc messages but not sysinit runlevels? Thanks, -- Valmor
[gentoo-user] 6.1.53-gentoo-r1 kernel not booting
Hello, For a while now (3 weeks or so) I have been upgrading the linux kernel on a Dell XPS laptop starting from 6.1.41-gentoo (which is my current working kernel) to 6.1.53-gentoo-r1. No kernel I have built since is able to boot. I have been following the same method for many years: make oldconfig, etc... The booting error starts at: [snip] * INIT: Entering runlevel: 3 [snip] * Starting cronie ... * Starting DHCP Client Daemon ... * Starting laptop_mode ... * Mounting network filesystems ... /etc/init.d/netmount: line 45 /lib/rc/bin/ewend: Input/output error /lib/rc/sh/rc-cgroup.sh: line 184: rmdir: command not found INIT: INIT: cannot execute "/sbin/agetty" INIT: cannot execute "/sbin/agetty" INIT: cannot execute "/sbin/agetty" [snip] The following kernels all failed to boot: 6.1.46-gentoo, 6.1.53-gentoo, 6.1.53-gentoo-r1. I am wondering whether this will eventually get fixed on later kernels. I have been upgrading kernels on this machine since 2020 every other week without any kernel problems. Inputs appreciated. Thanks, -- Valmor
[gentoo-user] [SOLVED] Re: ERROR: dev-lang/python-3.9.2::gentoo failed (install phase)
On 3/14/21 1:08 PM, Valmor F. de Almeida wrote:
On 3/14/21 2:20 AM, Valmor F. de Almeida wrote:
Hello,
Has anyone seen this recently?
* Messages for package dev-lang/python-3.9.2:
* ERROR: dev-lang/python-3.9.2::gentoo failed (install phase):
* (no error message)
*
* Call stack:
* ebuild.sh, line 125: Called src_install
* environment, line 3125: Called python_domodule 'epython.py'
* environment, line 2609: Called python_get_sitedir
* environment, line 2834: Called _python_export 'PYTHON_SITEDIR'
* environment, line 633: Called die
* The specific snippet of code:
* PYTHON_SITEDIR=$("${PYTHON}" -c 'import
distutils.sysconfig; print(distutils.sysconfig.get_python_lib())') ||
die;
*
* If you need support, post the output of `emerge --info
'=dev-lang/python-3.9.2::gentoo'`,
* the complete build log and the output of `emerge -pqv
'=dev-lang/python-3.9.2::gentoo'`.
* The complete build log is located at
'/var/tmp/portage/dev-lang/python-3.9.2/temp/build.log'.
* The ebuild environment file is located at
'/var/tmp/portage/dev-lang/python-3.9.2/temp/environment'.
* Working directory:
'/var/tmp/portage/dev-lang/python-3.9.2/work/Python-3.9.2'
* S: '/var/tmp/portage/dev-lang/python-3.9.2/work/Python-3.9.2'
The error in the log file is:
Fatal Python error: init_import_site: Failed to import the site module
I sync portage once a week. Sync problem?
Inputs appreciated.
Thanks,
--
Valmor
Added info; not sure this helps troubleshooting but I tried this and works:
Python 3.9.1 (default, Jan 30 2021, 04:59:43)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import distutils.sysconfig
>>> print(distutils.sysconfig.get_python_lib())
/usr/lib/python3.9/site-packages
>>>
Thanks,
--
Valmor
For the record:
emerge --sync
solved it.
--
Valmor
[gentoo-user] Re: ERROR: dev-lang/python-3.9.2::gentoo failed (install phase)
On 3/14/21 2:20 AM, Valmor F. de Almeida wrote:
Hello,
Has anyone seen this recently?
* Messages for package dev-lang/python-3.9.2:
* ERROR: dev-lang/python-3.9.2::gentoo failed (install phase):
* (no error message)
*
* Call stack:
* ebuild.sh, line 125: Called src_install
* environment, line 3125: Called python_domodule 'epython.py'
* environment, line 2609: Called python_get_sitedir
* environment, line 2834: Called _python_export 'PYTHON_SITEDIR'
* environment, line 633: Called die
* The specific snippet of code:
* PYTHON_SITEDIR=$("${PYTHON}" -c 'import
distutils.sysconfig; print(distutils.sysconfig.get_python_lib())') || die;
*
* If you need support, post the output of `emerge --info
'=dev-lang/python-3.9.2::gentoo'`,
* the complete build log and the output of `emerge -pqv
'=dev-lang/python-3.9.2::gentoo'`.
* The complete build log is located at
'/var/tmp/portage/dev-lang/python-3.9.2/temp/build.log'.
* The ebuild environment file is located at
'/var/tmp/portage/dev-lang/python-3.9.2/temp/environment'.
* Working directory:
'/var/tmp/portage/dev-lang/python-3.9.2/work/Python-3.9.2'
* S: '/var/tmp/portage/dev-lang/python-3.9.2/work/Python-3.9.2'
The error in the log file is:
Fatal Python error: init_import_site: Failed to import the site module
I sync portage once a week. Sync problem?
Inputs appreciated.
Thanks,
--
Valmor
Added info; not sure this helps troubleshooting but I tried this and works:
Python 3.9.1 (default, Jan 30 2021, 04:59:43)
[GCC 9.3.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import distutils.sysconfig
>>> print(distutils.sysconfig.get_python_lib())
/usr/lib/python3.9/site-packages
>>>
Thanks,
--
Valmor
[gentoo-user] ERROR: dev-lang/python-3.9.2::gentoo failed (install phase)
Hello,
Has anyone seen this recently?
* Messages for package dev-lang/python-3.9.2:
* ERROR: dev-lang/python-3.9.2::gentoo failed (install phase):
* (no error message)
*
* Call stack:
* ebuild.sh, line 125: Called src_install
* environment, line 3125: Called python_domodule 'epython.py'
* environment, line 2609: Called python_get_sitedir
* environment, line 2834: Called _python_export 'PYTHON_SITEDIR'
* environment, line 633: Called die
* The specific snippet of code:
* PYTHON_SITEDIR=$("${PYTHON}" -c 'import
distutils.sysconfig; print(distutils.sysconfig.get_python_lib())') || die;
*
* If you need support, post the output of `emerge --info
'=dev-lang/python-3.9.2::gentoo'`,
* the complete build log and the output of `emerge -pqv
'=dev-lang/python-3.9.2::gentoo'`.
* The complete build log is located at
'/var/tmp/portage/dev-lang/python-3.9.2/temp/build.log'.
* The ebuild environment file is located at
'/var/tmp/portage/dev-lang/python-3.9.2/temp/environment'.
* Working directory:
'/var/tmp/portage/dev-lang/python-3.9.2/work/Python-3.9.2'
* S: '/var/tmp/portage/dev-lang/python-3.9.2/work/Python-3.9.2'
The error in the log file is:
Fatal Python error: init_import_site: Failed to import the site module
I sync portage once a week. Sync problem?
Inputs appreciated.
Thanks,
--
Valmor
Re: [gentoo-user] why both /usr/lib and /usr/lib64 on a 64bit system?
On 2/14/21 5:54 PM, Rich Freeman wrote: On Sat, Feb 13, 2021 at 2:33 PM Valmor F. de Almeida wrote: Hello, I use the global flags USE="elogind alsa -multilib -abi_x86_32" and I thought this would prevent 32bit libraries to be installed. For example I have (from glibc) both: /usr/lib/libutil.so /usr/lib64/libutil.so In case you haven't already figured it out, glibc ignores the setting of abi_x86_32. It is controlled by your profile selection. Part of that might be legacy, but if you build glibc without lib32 support it is basically impossible to add it in later without bootstrapping it. If you don't want multilib then you can use a no-multilib profile. I ended up using: USE="elogind alsa -multilib -multiarch -abi_x86_32" but some libraries from glibc remain 32bit. My main goal was to remove 32bit libraries from libX11. This did happen since nvidia-drivers was installing the 32bit versions of libX11 if -multilib -abi_x86_32 were not used; maybe I should have used this in package.use/nvidia-drivers instead globally. Thanks for all the responses. -- Valmor
[gentoo-user] why both /usr/lib and /usr/lib64 on a 64bit system?
Hello, I use the global flags USE="elogind alsa -multilib -abi_x86_32" and I thought this would prevent 32bit libraries to be installed. For example I have (from glibc) both: /usr/lib/libutil.so /usr/lib64/libutil.so this causes problems with some packages outside portage that I would like to install. The install fails (or is incomplete) because it is trying to link a 32bit incompatible library, e.g.: /usr/lib/gcc/x86_64-pc-linux-gnu/9.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: skipping incompatible /usr/lib/libutil.so when searching for -lutil Is there a way to have only /usr/lib64 in gentoo or is this not possible? I do use export LD_LIBRARY_PATH=/usr/lib64:$LD_LIBRARY_PATH in my shell startup file. Thanks for inputs. -- Valmor
[gentoo-user] vtk python USE flag question
Hello, I emerged vtk with the python USE flag on. Next I started a python interactive session and tried to import vtk: -> python Python 3.8.6 (default, Nov 21 2020, 00:26:41) [GCC 9.3.0] on linux Type "help", "copyright", "credits" or "license" for more information. >>> import vtk but vtk can't be found. Are the bindings for python supposed to work this way? Thanks, -- Valmor
Re: [gentoo-user] pip search disabled?
On 12/17/20 11:55 PM, bobwxc wrote:
在 2020/12/18 上午2:32, Valmor F. de Almeida 写道:
Hello,
Has anyone seen this search problem with pip for any package?
-> pip search twine
ERROR: Exception:
Traceback (most recent call last):
File
"/usr/lib/python3.8/site-packages/pip/_internal/cli/base_command.py",
line 228, in _main
status = self.run(options, args)
File
"/usr/lib/python3.8/site-packages/pip/_internal/commands/search.py",
line 60, in run
pypi_hits = self.search(query, options)
File
"/usr/lib/python3.8/site-packages/pip/_internal/commands/search.py",
line 80, in search
hits = pypi.search({'name': query, 'summary': query}, 'or')
File "/usr/lib/python3.8/xmlrpc/client.py", line 1109, in __call__
return self.__send(self.__name, args)
File "/usr/lib/python3.8/xmlrpc/client.py", line 1450, in __request
response = self.__transport.request(
File
"/usr/lib/python3.8/site-packages/pip/_internal/network/xmlrpc.py",
line 45, in request
return self.parse_response(response.raw)
File "/usr/lib/python3.8/xmlrpc/client.py", line 1341, in
parse_response
return u.close()
File "/usr/lib/python3.8/xmlrpc/client.py", line 655, in close
raise Fault(**self._stack[0])
xmlrpc.client.Fault: temporarily disabled due to unmanageable load and will be deprecated
in the near future. Please use the Simple or JSON API instead.'>
Thanks,
--
Valmor
Just try it, and meet the same problem with python3.7 pip-20.2.4.
Then update to 20.3.3, still the same problem.
There are issues on github,
https://github.com/pypa/pip/issues/9292
https://github.com/pypa/pip/issues/9312
someone said,
*"*
Seehttps://status.python.org/incidents/grk0k7sz6zkp
<https://status.python.org/incidents/grk0k7sz6zkp>for context.
PyPI has had significant uptick in automated hits to the XMLRPC API,
which has resulted in needing to take that offline, as it hampers the
rest of the application's ability to function.
"
Thanks.
--
Valmor
[gentoo-user] pip search disabled?
Hello,
Has anyone seen this search problem with pip for any package?
-> pip search twine
ERROR: Exception:
Traceback (most recent call last):
File
"/usr/lib/python3.8/site-packages/pip/_internal/cli/base_command.py",
line 228, in _main
status = self.run(options, args)
File
"/usr/lib/python3.8/site-packages/pip/_internal/commands/search.py",
line 60, in run
pypi_hits = self.search(query, options)
File
"/usr/lib/python3.8/site-packages/pip/_internal/commands/search.py",
line 80, in search
hits = pypi.search({'name': query, 'summary': query}, 'or')
File "/usr/lib/python3.8/xmlrpc/client.py", line 1109, in __call__
return self.__send(self.__name, args)
File "/usr/lib/python3.8/xmlrpc/client.py", line 1450, in __request
response = self.__transport.request(
File
"/usr/lib/python3.8/site-packages/pip/_internal/network/xmlrpc.py", line
45, in request
return self.parse_response(response.raw)
File "/usr/lib/python3.8/xmlrpc/client.py", line 1341, in parse_response
return u.close()
File "/usr/lib/python3.8/xmlrpc/client.py", line 655, in close
raise Fault(**self._stack[0])
xmlrpc.client.Fault: temporarily disabled due to unmanageable load and will be deprecated in
the near future. Please use the Simple or JSON API instead.'>
Thanks,
--
Valmor
[gentoo-user] paraview build
Hello, Has anyone been able to build sci-visualization/paraview either through portage or outside portage? Currently I can't either way. Thanks for inputs. -- Valmor
[gentoo-user] X11 specific libs not used/found
Hello, I am trying to install a data visualization package (VisIt) which installs locally, on its own, a qt package (qt-everywhere-src-5.14.2). The config output says: [snip] X11 specific: XLib . no XCB Xlib . no EGL on X11 ... no [snip] XCB: Using system-provided XCB libraries .. no XCB XKB .. yes XCB XInput ... yes Native painting (experimental) ... no GL integrations: GLX Plugin . no EGL-X11 Plugin . no which indicates that later during install of the whole package, some XCB files are not found. I have installed libX11, and xorg-x11. Apparently some libx11-dev package is needed but I don't seem to find it in Gentoo. Any help appreciated. Thanks, -- Valmor
Re: [gentoo-user] unable to login some websites using www-client/firefox-68.9.0
On 7/5/20 7:36 PM, Серега Филатов wrote: Maybe "do not track" causes this issue? Are you able to log in on firefox-bin? Another browser? Another system in your network? On Sun, Jul 5, 2020, 20:36 Valmor F. de Almeida <mailto:val.gen...@gmail.com>> wrote: Hello list: I have emerged www-client/firefox-68.9.0 and I am able to log in to, say google email accounts, etc. However at some other websites that require username/password, I am not able to log in. I have cleared the cache, deleted all cookies, etc. Still problematic. I don't get any errors upon login. Just get straight back to the original site prompting for the username and password. Just checking on this list whether I used all USE flags correctly when emerging firefox: bindist, gmp-autoupdate, pulseaudio, screenshot, system-av1, system-harfbuzz, system-icu, system-jpeg, system-libevent, system-libvpx, system-sqlite, system-webp. I only have two add-ons: flag and dark background loaded. Inputs appreciated. Thanks, -- Valmor Yes I am able to log in from a Mac OS using FF. I have not tried firefox-bin; I should do it. Thanks, -- Valmor
[gentoo-user] unable to login some websites using www-client/firefox-68.9.0
Hello list: I have emerged www-client/firefox-68.9.0 and I am able to log in to, say google email accounts, etc. However at some other websites that require username/password, I am not able to log in. I have cleared the cache, deleted all cookies, etc. Still problematic. I don't get any errors upon login. Just get straight back to the original site prompting for the username and password. Just checking on this list whether I used all USE flags correctly when emerging firefox: bindist, gmp-autoupdate, pulseaudio, screenshot, system-av1, system-harfbuzz, system-icu, system-jpeg, system-libevent, system-libvpx, system-sqlite, system-webp. I only have two add-ons: flag and dark background loaded. Inputs appreciated. Thanks, -- Valmor
Re: [gentoo-user] color fonts?
On 7/4/20 7:51 AM, Caveman Al Toraboran wrote: hi - some colors are fancy schmancy, look: https://www.fontspace.com/category/color can we do this to linux? e.g. in urxvt? also can we make our own color fonts? e.g. can OTB fonts have color encoded in them? rgrds, cm. Maybe this is a place to start; for terminals: https://pypi.org/project/rich/ Just a thought. -- Valmor
[SOLVED] Re: [gentoo-user] WARNING: One or more updates/rebuilds have been skipped due to a dependency conflict
On 7/3/20 10:51 PM, Francesco Turco wrote: On Sat, Jul 4, 2020, at 06:35, Valmor F. de Almeida wrote: Is there a problem ignoring the warning below? My understanding here is that dev-python/docutils-0.16 wants a python2_7 target built that is not in the scheduled merge (only python3_7 is). Hopefully this dependency conflict will fix itself as python2 goes away. Please see: https://bugs.gentoo.org/722762 This was gentoo fast. Thanks. -- Valmor
[gentoo-user] WARNING: One or more updates/rebuilds have been skipped due to a dependency conflict
Hello list: Is there a problem ignoring the warning below? My understanding here is that dev-python/docutils-0.16 wants a python2_7 target built that is not in the scheduled merge (only python3_7 is). Hopefully this dependency conflict will fix itself as python2 goes away. Thank you for inputs. -- Valmor WARNING: One or more updates/rebuilds have been skipped due to a dependency conflict: dev-python/pygments:0 (dev-python/pygments-2.6.1:0/0::gentoo, ebuild scheduled for merge) USE="-doc -test" ABI_X86="(64)" PYTHON_TARGETS="python3_7 (-pypy3) -python3_6 (-python3_8) (-python3_9)" conflicts with dev-python/pygments[python_targets_python2_7(-),python_targets_python3_7(-),-python_single_target_pypy3(-),-python_single_target_python2_7(-),-python_single_target_python3_6(-),-python_single_target_python3_7(-),-python_single_target_python3_8(-),-python_single_target_python3_9(-)] required by (dev-python/docutils-0.16:0/0::gentoo, installed) USE="" ABI_X86="(64)" PYTHON_TARGETS="python2_7 python3_7 (-pypy3) -python3_6 (-python3_8) (-python3_9)"
[SOLVED] Re: [gentoo-user] jupyter notebook 500 : Internal Server Error
On 6/26/20 10:08 AM, Andreas K. Huettel wrote: Am Donnerstag, 25. Juni 2020, 22:13:46 CEST schrieb Valmor de Almeida: Hello, I had to enable ~amd64 to emerge jupyter so I know this is bound for problems. However, anyone there able to use jupyter notebooks in gentoo? No matter what notebook I try to open, I get the internal server error. Thank you. Try updating dev-python/nbconvert to a version newer than the stable one. You probably did this the same way as me, keywording only what was really necessary on an otherwise stable system. Problem is, notebooks have an internal versioning, and nbconvert-5.2 doesn't support recent versions anymore. After updating nbconvert things worked fine for me. (Time to fix this, I know, but there's only so many hours in the day...) Thank you. It worked! -- Vamor Here is some info for reference: * dev-python/jupyter Latest version available: 1.0.0-r2 Latest version installed: 1.0.0-r2 Size of files: 15 KiB Homepage: https://jupyter.org Description: Jupyter metapackage. Install all the Jupyter components in one go License: BSD * dev-python/jupyter_client Latest version available: 5.2.3-r1 Latest version installed: 5.2.3-r1 Size of files: 266 KiB Homepage: https://jupyter.org Description: Jupyter protocol implementation and client libraries License: BSD * dev-python/jupyter_console Latest version available: 6.1.0 Latest version installed: 6.1.0 Size of files: 28 KiB Homepage: https://jupyter.org Description: A terminal-based console frontend for Jupyter kernels License: BSD * dev-python/jupyter_core Latest version available: 4.6.1-r1 Latest version installed: 4.6.1-r1 Size of files: 66 KiB Homepage: https://jupyter.org Description: Core common functionality of Jupyter projects License: BSD * dev-python/nbconvert Latest version available: 5.6.1 Latest version installed: 5.5.0 Size of files: 687 KiB Homepage: https://nbconvert.readthedocs.io/ Description: Converting Jupyter Notebooks License: BSD /etc/portage/package.accept_keywords/jupyter dev-python/jupyter ~amd64 dev-python/jupyter_console ~amd64 dev-python/nbconvert ~amd64 /etc/portage/package.use/jupyter net-libs/zeromq drafts dev-python/PyQt5 gui svg widgets x11-libs/libxkbcommon X dev-libs/libpcre pcre16 dev-libs/libpcre2 pcre16 emerge jupyter emerge =nbconvert-5.5.0
