Hi Tim,
I’m sorry but the publicly available version of RestingStateStats is not yet
compatible with multi-run FIX. Getting this script updated is on the to-do
list. If you want to e-mail me off list about why you need RestingStateStats
now, we can work something out.
Matt.
From:
mailto:hcp-users-boun...@humanconnectome.org>>
on behalf of Timothy Hendrickson mailto:hendr...@umn.edu>>
Date: Monday, August 27, 2018 at 11:46 AM
To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
mailto:HCP-Users@humanconnectome.org>>
Subject: [HCP-Users] Resting State Stats Following hcp_fix_multi_run and MSMAll
Hello,
I am working on Resting State Stats following hcp_fix_multi_run and MSMAll. My
call to run_RestingStateStats.sh initially failed because it was attempting to
point to .fix within the resting state scan directory rather than the
hcp_fix_multi_run concatenated directory. Once I changed this it seemed to run,
however, I received an error within the .matlab.log
RestingStateStats - Finished fslmaths filtering of motion confounds
Error using *
Inner matrix dimensions must agree.
Error in RestingStateStats (line 232)
MATLAB:innerdim
This told me that I should change the Movement Regressor path from the resting
state scan to the hcp_fix_mult_run concatenation.
Here is the full call, I just want to make sure I am providing the correct
inputs:
/opt/HCP-Pipelines/RestingStateStats/Compiled_RestingStateStats/distrib/run_RestingStateStats.sh
/usr/local/R2013a/v81
'/output_dir/sub-7397/ses-51327/MNINonLinear/Results/multiICAFIX/Movement_Regressors_demean'
2000 0.80
'/output_dir/sub-7397/ses-51327/MNINonLinear/Results/multiICAFIX/multiICAFIX_hp2000.ica/filtered_func_data.ica/melodic_mix'
'/output_dir/sub-7397/ses-51327/MNINonLinear/Results/multiICAFIX/multiICAFIX_hp2000.ica/.fix'
'/opt/workbench/bin_rh_linux64/wb_command'
'/output_dir/sub-7397/ses-51327/MNINonLinear/Results/sub-7397_ses-51327_task-rest_run-01_bold/sub-7397_ses-51327_task-rest_run-01_bold_Atlas'
'/output_dir/sub-7397/ses-51327/MNINonLinear/Results/sub-7397_ses-51327_task-rest_run-01_bold/sub-7397_ses-51327_task-rest_run-01_bold_Atlas_BiasField.dscalar.nii'
'/output_dir/sub-7397/ses-51327/MNINonLinear/Results/sub-7397_ses-51327_task-rest_run-01_bold/RestingStateStats/sub-7397_ses-51327_task-rest_run-01_bold_Atlas'
'/360CortSurf_19Vol_parcel.dlabel.nii' 'REVERT' 'stats' 'NONE' 'NONE' >>
/output_dir/sub-7397/ses-51327/MNINonLinear/Results/sub-7397_ses-51327_task-rest_run-01_bold/RestingStateStats/ses-51327_sub-7397_ses-51327_task-rest_run-01_bold.matlab.log
2>&1
-Tim
Timothy Hendrickson
Neuroimaging Analyst/Staff Scientist
University of Minnesota Informatics Institute
University of Minnesota
Bioinformatics M.S. Candidate
Office: 612-624-0783
Mobile: 507-259-3434 (texts okay)
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