[jira] [Created] (ARROW-12179) Regression: problems saving/loading bit64::integer64
Ofek Shilon created ARROW-12179:
---
Summary: Regression: problems saving/loading bit64::integer64
Key: ARROW-12179
URL: https://issues.apache.org/jira/browse/ARROW-12179
Project: Apache Arrow
Issue Type: Bug
Components: R
Affects Versions: 3.0.0
Environment: R3.4 + arrow0.17 / R4.0.4 + arrow3.0.0
Reporter: Ofek Shilon
This code worked as expected in R3.4 and arrow package v0.17:
{quote}df <- data.frame(a=bit64::as.integer64(1:10))
arrow::write_feather(x=df, sink="/home/ofek/tmp/test64")
df_read <- arrow::read_feather("/home/ofek/tmp/test64")
class(df_read$a) # integer64
{quote}
But upgrading to R4+v3.0.0 we see that the output of class(df_read$a) is
"integer". Stuff breaks.
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[jira] [Created] (ARROW-10296) [R] Data saved as integer64 loaded as integer
Ofek Shilon created ARROW-10296:
---
Summary: [R] Data saved as integer64 loaded as integer
Key: ARROW-10296
URL: https://issues.apache.org/jira/browse/ARROW-10296
Project: Apache Arrow
Issue Type: Bug
Components: R
Affects Versions: 1.0.1
Environment: R3.6.1, arrow 1.0.1, bit64 4.0.5
full sessionIfno():
R version 3.6.1 (2019-07-05)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 19041)
Matrix products: default
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] Rcpp_1.0.5 fansi_0.4.1 arrow_1.0.1 dplyr_1.0.2
crayon_1.3.4 assertthat_0.2.1 R6_2.4.1 lifecycle_0.2.0
[9] magrittr_1.5 pillar_1.4.6 cli_2.0.2rlang_0.4.7
rstudioapi_0.11 generics_0.0.2 vctrs_0.3.4 ellipsis_0.3.1
[17] tools_3.6.1 bit64_4.0.5 feather_0.3.5glue_1.4.2
purrr_0.3.4 bit_4.0.4hms_0.5.3compiler_3.6.1
[25] pkgconfig_2.0.3 tidyselect_1.1.0 tibble_3.0.3
Reporter: Ofek Shilon
{{> v <- bit64::as.integer64(1:10)}}
{{> v <- as.integer64(1:10)}}
{{> df <- data.frame(v=v)}}
{{> class(df$v)
}}{{[1] "*integer64*"
> arrow::write_feather(df, "./tmp")}}
{{> df2 <- arrow::read_feather("./tmp")}}
{{> class(df2$v)}}
{{[1] "*integer*"}}
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[jira] [Created] (ARROW-9953) R package missing dependencies versions
Ofek Shilon created ARROW-9953:
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Summary: R package missing dependencies versions
Key: ARROW-9953
URL: https://issues.apache.org/jira/browse/ARROW-9953
Project: Apache Arrow
Issue Type: Bug
Components: R
Affects Versions: 1.0.1
Environment: R3.4, linux, bit64 0.9-5 pre-installed
Reporter: Ofek Shilon
The DESCRIPTION file lists -
{{ Imports:}}
{{ {{ assertthat,
{{ {{ bit64,
{{ {{ ...
However for us (R3.4 over linux, with various old package versions installed)
the installation fails. The error message is
{{Error : object 'str.integer64' is not exported by 'namespace:bit64'}}
{{ERROR: lazy loading failed for package 'arrow'}}
We believe that 'bit64' in the Imports section should have been 'bit64 (>=
0.9-7)', as previous versions of bit64 do not export 'str.integer64'.
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[jira] [Created] (ARROW-9932) R package fails to install on Ubuntu 14
Ofek Shilon created ARROW-9932:
--
Summary: R package fails to install on Ubuntu 14
Key: ARROW-9932
URL: https://issues.apache.org/jira/browse/ARROW-9932
Project: Apache Arrow
Issue Type: Bug
Components: R
Affects Versions: 1.0.1
Environment: R version 3.4.0 (2015-04-16)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 14.04.5 LTS
Reporter: Ofek Shilon
1. From R (3.4) prompt, we run
{{> install.packages("arrow")}}
and it seems to succeed.
2. Next we run:
{{> arrow::install_arrow()}}
This is the full output:
{{Installing package into '/opt/R-3.4.0.mkl/library'}}
{{(as 'lib' is unspecified)}}
{{trying URL 'https://cloud.r-project.org/src/contrib/arrow_1.0.1.tar.gz'}}
{{Content type 'application/x-gzip' length 274865 bytes (268 KB)}}
{{==}}
{{downloaded 268 KBinstalling *source* package 'arrow' ...}}
{{** package 'arrow' successfully unpacked and MD5 sums checked}}
{{*** No C++ binaries found for ubuntu-14.04}}
{{*** Successfully retrieved C++ source}}
{{*** Building C++ libraries}}
{{ cmake}}
{{Error in dQuote(env_var_list, FALSE) : unused argument (FALSE)}}
{{Calls: build_libarrow -> paste}}
{{Execution halted}}
{{- NOTE ---}}
{{After installation, please run arrow::install_arrow()}}
{{for help installing required runtime libraries}}
{{-}}
{{** libs}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c array.cpp -o array.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c array_from_vector.cpp -o array_from_vector.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c array_to_vector.cpp -o array_to_vector.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c arraydata.cpp -o arraydata.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c arrowExports.cpp -o arrowExports.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c buffer.cpp -o buffer.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c chunkedarray.cpp -o chunkedarray.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c compression.cpp -o compression.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c compute.cpp -o compute.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c csv.cpp -o csv.o}}{{g++ -std=gnu++0x
-I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c dataset.cpp -o dataset.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c datatype.cpp -o datatype.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c expression.cpp -o expression.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c feather.cpp -o feather.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c field.cpp -o field.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c filesystem.cpp -o filesystem.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c imports.cpp -o imports.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
-I"/opt/R-3.4.0.mkl/library/Rcpp/include" -I/usr/local/include -fpic
-march=x86-64 -O3 -c io.cpp -o io.o}}
{{g++ -std=gnu++0x -I/opt/R-3.4.0.mkl/lib64/R/include -DNDEBUG
