Re: [Jmol-developers] Problems in calling Jmol

2011-12-04 Thread Robert Hanson
Hellow, Linux experts? What can you suggest for Moon?

On Sun, Dec 4, 2011 at 12:44 AM, Moon Cheung moon...@gmail.com wrote:

 It has the same problem in running Jmol.sh from the command line.This time
 Jmol will stop at Creating main window.
 And once the problem occurs, it will occur continuously after i kill the
 process.

 Best Regards
 Moon


 2011/12/4 Robert Hanson hans...@stolaf.edu

 Does Jmol.sh run generally on your machine from the command line?

 On Sat, Dec 3, 2011 at 6:25 AM, Moon Cheung moon...@gmail.com wrote:

 Hi,

 When i use system call in c to call Jmol under Linux(the code is
 (void)system(/opt/QtSDK/Projects/jmol-12.2.7/jmol.sh -s
 /opt/QtSDK/Projects/testing3.pdb.spt))
 And testing3.pdb.spt is a Rasmol Script in the code.
 There is a problem that the Jmol will stop running at Setting up drag
 and drop.
 This situation will occur 1 around 5 times.
 What can i do with this situation?

 Best Regards,
 Moon


 --
 All the data continuously generated in your IT infrastructure
 contains a definitive record of customers, application performance,
 security threats, fraudulent activity, and more. Splunk takes this
 data and makes sense of it. IT sense. And common sense.
 http://p.sf.net/sfu/splunk-novd2d
 ___
 Jmol-developers mailing list
 Jmol-developers@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/jmol-developers




 --
 Robert M. Hanson
 Professor of Chemistry
 St. Olaf College
 1520 St. Olaf Ave.
 Northfield, MN 55057
 http://www.stolaf.edu/people/hansonr
 phone: 507-786-3107


 If nature does not answer first what we want,
 it is better to take what answer we get.

 -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900


 --
 All the data continuously generated in your IT infrastructure
 contains a definitive record of customers, application performance,
 security threats, fraudulent activity, and more. Splunk takes this
 data and makes sense of it. IT sense. And common sense.
 http://p.sf.net/sfu/splunk-novd2d
 ___
 Jmol-developers mailing list
 Jmol-developers@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/jmol-developers




 --
 All the data continuously generated in your IT infrastructure
 contains a definitive record of customers, application performance,
 security threats, fraudulent activity, and more. Splunk takes this
 data and makes sense of it. IT sense. And common sense.
 http://p.sf.net/sfu/splunk-novd2d
 ___
 Jmol-developers mailing list
 Jmol-developers@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/jmol-developers




-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
All the data continuously generated in your IT infrastructure 
contains a definitive record of customers, application performance, 
security threats, fraudulent activity, and more. Splunk takes this 
data and makes sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-novd2d___
Jmol-developers mailing list
Jmol-developers@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-developers


Re: [Jmol-developers] Problems in calling Jmol

2011-12-04 Thread Jonathan Gutow
I don't use the jmol.sh script  very often, but one possibility is that the 
memory defaults in it are too small for the virtual machine he is using.  
Another guess is that he is using the IceTea JVM and not the Sun/Oracle JVM.  
IceTea is getting better, but I've still had occasional problems with it.

Jonathan
On Dec 4, 2011, at 12:02 PM, Robert Hanson wrote:

 Hellow, Linux experts? What can you suggest for Moon?
 
 On Sun, Dec 4, 2011 at 12:44 AM, Moon Cheung moon...@gmail.com wrote:
 It has the same problem in running Jmol.sh from the command line.This time 
 Jmol will stop at Creating main window.
 And once the problem occurs, it will occur continuously after i kill the 
 process.
 
 Best Regards
 Moon
 
 
 2011/12/4 Robert Hanson hans...@stolaf.edu
 Does Jmol.sh run generally on your machine from the command line?
 
 On Sat, Dec 3, 2011 at 6:25 AM, Moon Cheung moon...@gmail.com wrote:
 Hi,
 
 When i use system call in c to call Jmol under Linux(the code is 
 (void)system(/opt/QtSDK/Projects/jmol-12.2.7/jmol.sh -s 
 /opt/QtSDK/Projects/testing3.pdb.spt))
 And testing3.pdb.spt is a Rasmol Script in the code.
 There is a problem that the Jmol will stop running at Setting up drag and 
 drop.
 This situation will occur 1 around 5 times.
 What can i do with this situation?
 
 Best Regards,
 Moon
 
 --
 All the data continuously generated in your IT infrastructure
 contains a definitive record of customers, application performance,
 security threats, fraudulent activity, and more. Splunk takes this
 data and makes sense of it. IT sense. And common sense.
 http://p.sf.net/sfu/splunk-novd2d
 ___
 Jmol-developers mailing list
 Jmol-developers@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/jmol-developers
 
 
 
 
 -- 
 Robert M. Hanson
 Professor of Chemistry
 St. Olaf College
 1520 St. Olaf Ave.
 Northfield, MN 55057
 http://www.stolaf.edu/people/hansonr
 phone: 507-786-3107
 
 
 If nature does not answer first what we want,
 it is better to take what answer we get. 
 
 -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
 
 --
 All the data continuously generated in your IT infrastructure
 contains a definitive record of customers, application performance,
 security threats, fraudulent activity, and more. Splunk takes this
 data and makes sense of it. IT sense. And common sense.
 http://p.sf.net/sfu/splunk-novd2d
 ___
 Jmol-developers mailing list
 Jmol-developers@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/jmol-developers
 
 
 
 --
 All the data continuously generated in your IT infrastructure
 contains a definitive record of customers, application performance,
 security threats, fraudulent activity, and more. Splunk takes this
 data and makes sense of it. IT sense. And common sense.
 http://p.sf.net/sfu/splunk-novd2d
 ___
 Jmol-developers mailing list
 Jmol-developers@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/jmol-developers
 
 
 
 
 -- 
 Robert M. Hanson
 Professor of Chemistry
 St. Olaf College
 1520 St. Olaf Ave.
 Northfield, MN 55057
 http://www.stolaf.edu/people/hansonr
 phone: 507-786-3107
 
 
 If nature does not answer first what we want,
 it is better to take what answer we get. 
 
 -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
 --
 All the data continuously generated in your IT infrastructure 
 contains a definitive record of customers, application performance, 
 security threats, fraudulent activity, and more. Splunk takes this 
 data and makes sense of it. IT sense. And common sense.
 http://p.sf.net/sfu/splunk-novd2d
 ___
 Jmol-developers mailing list
 Jmol-developers@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/jmol-developers

 Dr. Jonathan H. Gutow
Chemistry Departmentgu...@uwosh.edu
UW-Oshkosh  Office: 920-424-1326
800 Algoma BoulevardFAX:920-424-2042
Oshkosh, WI 54901
http://www.uwosh.edu/facstaff/gutow

--
All the data continuously generated in your IT infrastructure 
contains a definitive record of customers, application performance, 
security threats, fraudulent activity, and more. Splunk takes this 
data and makes sense of it. IT sense. And common sense.
http://p.sf.net/sfu/splunk-novd2d___
Jmol-developers mailing list