Re: [PyMOL] How do I make two grouped sets of dashes different lengths/widths?

2018-10-08 Thread Kelvin Luther
Hi Jared,

Thanks for the information.  I finally stumbled onto the correct syntax when 
looking at how to move labels around.

Unfortunately, when I make the attempt, the log shows that all the grouped 
measurements are appropriately changed, but unfortunately, the changes are not 
limited to that group!  I think there may be a bug.  I'm pretty sure that the 
changes to one group are bleeding over to the other group, because I have the 
dashes colored differently, and the changes that bled over to the wrong group 
suddenly create a multi-colored line instead of a mono-color set of dashes.

I think I have a work-around solution where I'll load two copies of my pdb.  
One will have dashes for H-bonds.  One will have dashes for van der Waals, and 
then I'll delete everything but the dashes for one of them.

Thanks for your time,

Kelvin


On 08/10/2018 1:34 PM, Jared Sampson wrote:
Hi Kelvin -

Try this syntax:

# Create a new example molecule
fab A, ala

# Create the dashes using the `dist[ance]` command and two atom selections
dist dash1, name H, name O
dist dash2, name N, name 1HB

# Add the dashes to a named group
group group1, dash1
group group2, dash2

# Change the width (radius) and spacing (gap) of the dashes in the groups
set dash_radius, 0.25, group1
set dash_gap, 1.0, group1
set dash_radius, 0.025, group2
set dash_gap, 0.10, group2

Hope that helps.

Cheers,
Jared


On October 8, 2018 at 11:55:03 AM, Kelvin Brent Luther 
(kelvin.lut...@uga.edu) wrote:

Hello all,


I'm hoping someone can help me figure out a syntax to use to make two sets of 
dashes in my figures different widths and lengths.  I understand how to make 
these changes in general, but each time I try to limit a change to only one 
named group of dashes, the syntax doesn't work, or it changes all dashes.  Is 
it even possible to do what I am attempting?


Thanks in advance for any help you can provide,


Kelvin Luther

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Re: [PyMOL] How do I make two grouped sets of dashes different lengths/widths?

2018-10-08 Thread Jared Sampson
Hi Kelvin -

Try this syntax:

# Create a new example molecule
fab A, ala

# Create the dashes using the `dist[ance]` command and two atom selections
dist dash1, name H, name O
dist dash2, name N, name 1HB

# Add the dashes to a named group
group group1, dash1
group group2, dash2

# Change the width (radius) and spacing (gap) of the dashes in the groups
set dash_radius, 0.25, group1
set dash_gap, 1.0, group1
set dash_radius, 0.025, group2
set dash_gap, 0.10, group2

Hope that helps.

Cheers,
Jared

On October 8, 2018 at 11:55:03 AM, Kelvin Brent Luther (kelvin.lut...@uga.edu) 
wrote:

Hello all,

I'm hoping someone can help me figure out a syntax to use to make two sets of 
dashes in my figures different widths and lengths.  I understand how to make 
these changes in general, but each time I try to limit a change to only one 
named group of dashes, the syntax doesn't work, or it changes all dashes.  Is 
it even possible to do what I am attempting?

Thanks in advance for any help you can provide,

Kelvin Luther

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[PyMOL] How do I make two grouped sets of dashes different lengths/widths?

2018-10-08 Thread Kelvin Brent Luther
Hello all,


I'm hoping someone can help me figure out a syntax to use to make two sets of 
dashes in my figures different widths and lengths.  I understand how to make 
these changes in general, but each time I try to limit a change to only one 
named group of dashes, the syntax doesn't work, or it changes all dashes.  Is 
it even possible to do what I am attempting?


Thanks in advance for any help you can provide,


Kelvin Luther
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2018-10-08 Thread Thomas Holder
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Re: [PyMOL] Please unsubscribe me

2018-10-08 Thread Wei Li
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Re: [PyMOL] ...i'm not real user

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Subject: Re: [PyMOL] ...i'm not real user

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Re: [PyMOL] ...i'm not real user

2018-10-08 Thread Danilo Sant'Ana
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