Hi Arthur,
The origin of rotation will become the focal point. So all you have to do is:
PyMOL> origin resn DUD
The blur will look better if you increase the sample size, e.g. samples=20.
Cheers,
Thomas
> On May 15, 2019, at 9:50 AM, sunyeping via PyMOL-users
> wrote:
>
> Dear all,
>
> I have a protein-ligand complex and I wish to make the protein looks blur but
> keep the ligand clear and sharp with pymol. I find a "focalblur" script
> (https://pymolwiki.org/index.php/FocalBlur) which seems to be able to do
> this. However I can get the fancy effect illustrated in the examples of the
> wiki for this script. With the follow command:
>
> FocalBlur aperture=2,samples=10,ray=1,width=1000,height=1000
>
>
> I just make the ligand rather the the protein become blur (Please see the
> image at https://drive.google.com/open?id=1qzXDLzVyxI85sJ8H6Zhv8pd8Cq7rA18U,
> and the pse file used to make this image is availabe at
> https://drive.google.com/open?id=1Gjrl5ePifadWEK8-AZYVXY7yX07kOLF7).
>
> Could anyone help with this？ What does the argument "aperture" do? How to
> control which part become blur? Is there better way to make the ligand blur?
>
> Thank you very much!
>
> Arthur
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--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
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