[PyMOL] problem with Add Morph to eMovie

[Michael Oldham]

I am having a problem with Add Morph to eMovie

I have generating a morph and it shows up on the screen fine but when I try to 
Add Morph to eMovie, It gives the following error:

Error: 1
type 'exceptions.UnboundLocalError' Exception in Tk callback
  Function: bound method AddMorphParam.ok of 
pmg_tk.startup.eMovie.AddMorphParam instance at 0x2aaab0718ef0 (type: type 
'instancemethod')
  Args: ()
Traceback (innermost last):
  File 
/chendata/home/moldham/movies/Chen_Trustee_Meeting/pymol/ext/lib/python2.7/site-packages/Pmw/Pmw_1_3/lib/PmwBase.py,
 line 1747, in __call__
return apply(self.func, args)
  File 
/chendata/home/moldham/movies/Chen_Trustee_Meeting/pymol/ext/lib/python2.7/lib-tk/tkSimpleDialog.py,
 line 136, in ok
self.apply()
  File 
/chendata/home/moldham/movies/Chen_Trustee_Meeting/pymol/modules/pmg_tk/startup/eMovie.py,
 line 2179, in apply
mv_cmd(%i-%i:%i-%i%(startFrame,startFrame + 29,startState,endState),)
type 'exceptions.UnboundLocalError': local variable 'startState' referenced 
before assignment


Any suggestions?

thanks,

Michael Oldham
Rockefeller University
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[PyMOL] map smaller than in Coot

[Michael Oldham]

I have a map that I generated from VOIDOO for a cavity in my protein  
structure. In Coot and O it shows up as the same size and fully covers  
a ligand visible in my structure. In PyMol it is visibly smaller and  
does not cover the ligand as well. does anyone have any idea of a  
parameter that can be changed to show the map as it looks in Coot.

Thanks


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[PyMOL] curved cylinders in PyMOL

[Michael Oldham]

I wish to depict my protein with a cylindrical cartoon representation,  
but I wish to draw the cylinders so they contour to the shape of bent  
and curved helices instead of making a regular cylinder between the  
two residues indicated. Can this be done in PyMOL.  Thanks

[PyMOL] mixed ribbons and cylinders

[Michael Oldham]

I wish to make a figure which has some helices shown as cylinders and some shown
as the default cartoon automatic representation. I can change all the helices to
cylinders, but when I try to select some to go back to cartoon automatic nothing
changes.  Any suggestions of a better way.  Thanks
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