Re: [PyMOL] Pymol apbs problem
Hi Evan: I ran pdb2pqr by hand and I think the Zn and CTP is problematic: REMARK 5 WARNING: PDB2PQR was unable to assign charges REMARK 5 to the following atoms (omitted below): REMARK 5 7220 ZN in ZN 154 REMARK 5 7221 ZN in ZN 154 REMARK 5 7222 N1 in CTP 901 REMARK 5 7223 C2 in CTP 901 REMARK 5 7224 N3 in CTP 901 REMARK 5 7225 C4 in CTP 901 REMARK 5 7226 C5 in CTP 901 REMARK 5 7227 C6 in CTP 901 REMARK 5 7228 O2 in CTP 901 REMARK 5 7229 N4 in CTP 901 REMARK 5 7230 C1' in CTP 901 REMARK 5 7231 C2' in CTP 901 REMARK 5 7232 O2' in CTP 901 REMARK 5 7233 C3' in CTP 901 REMARK 5 7234 C4' in CTP 901 REMARK 5 7235 O4' in CTP 901 REMARK 5 7236 O3' in CTP 901 REMARK 5 7237 C5' in CTP 901 REMARK 5 7238 O5' in CTP 901 REMARK 5 7239 PA in CTP 901 REMARK 5 7240 O1A in CTP 901 REMARK 5 7241 O2A in CTP 901 REMARK 5 7242 O3A in CTP 901 REMARK 5 7243 PB in CTP 901 REMARK 5 7244 O1B in CTP 901 REMARK 5 7245 O2B in CTP 901 REMARK 5 7246 O3B in CTP 901 REMARK 5 7247 PG in CTP 901 REMARK 5 7248 O1G in CTP 901 REMARK 5 7249 O2G in CTP 901 REMARK 5 7250 O3G in CTP 901 REMARK 5 7251 N1 in CTP 902 REMARK 5 7252 C2 in CTP 902 REMARK 5 7253 N3 in CTP 902 REMARK 5 7254 C4 in CTP 902 REMARK 5 7255 C5 in CTP 902 REMARK 5 7256 C6 in CTP 902 REMARK 5 7257 O2 in CTP 902 REMARK 5 7258 N4 in CTP 902 REMARK 5 7259 C1' in CTP 902 REMARK 5 7260 C2' in CTP 902 REMARK 5 7261 O2' in CTP 902 REMARK 5 7262 C3' in CTP 902 REMARK 5 7263 C4' in CTP 902 REMARK 5 7264 O4' in CTP 902 REMARK 5 7265 O3' in CTP 902 REMARK 5 7266 C5' in CTP 902 REMARK 5 7267 O5' in CTP 902 REMARK 5 7268 PA in CTP 902 REMARK 5 7269 O1A in CTP 902 REMARK 5 7270 O2A in CTP 902 REMARK 5 7271 O3A in CTP 902 REMARK 5 7272 PB in CTP 902 REMARK 5 7273 O1B in CTP 902 REMARK 5 7274 O2B in CTP 902 REMARK 5 7275 O3B in CTP 902 REMARK 5 7276 PG in CTP 902 REMARK 5 7277 O1G in CTP 902 REMARK 5 7278 O2G in CTP 902 REMARK 5 7279 O3G in CTP 902 REMARK 5 REMARK 6 Total charge on this protein: -10. e REMARK 6 Bill On Fri, 21 Sep 2007 08:46:43 -0700 DeLano Scientific del...@delsci.info wrote: Evan, This appears to be a problem with file format incompatibility between PyMOL and the psize.py script. I suspect that rounding off the atom coordinates will eliminate it: alter_state 1, all, (x,y,z)=(int(x*1000)/1000.0, int(y*1000)/1000.0, int(z*1000)/1000.0) Cheers, Warren _ From: pymol-users-boun...@lists.sourceforge.net [mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Evan Kantrowitz Sent: Friday, September 21, 2007 7:28 AM To: PyMOL-users@lists.sourceforge.net Subject: [PyMOL] Pymol apbs problem With a certain file 1za1 from pdb when I try to run apbs I get the errors below. Other files are OK. Any suggestions? error: 1 ValueError Exception in Tk callback Function: function lambda at 0x182892b0 (type: type 'function') Args: () Traceback (innermost last): File /Applications/MacPyMol/PyMOLX11Hybrid.app/pymol/modules/Pmw/Pmw_1_2/lib/Pmw Base.py, line 1747, in __call__ return apply(self.func, args) File /Applications/MacPyMol/PyMOLX11Hybrid.app/pymol/modules/Pmw/Pmw_1_2/lib/Pmw Dialog.py, line 153, in lambda command=lambda self=self, name=name: self._doCommand(name)) File /Applications/MacPyMol/PyMOLX11Hybrid.app/pymol/modules/Pmw/Pmw_1_2/lib/Pmw Dialog.py, line 132, in _doCommand return command(name) File /Applications/MacPyMol/PyMOLX11Hybrid.app/pymol/modules/pmg_tk/startup/apbs _tools.py, line , in execute self.runPsize() File /Applications/MacPyMol/PyMOLX11Hybrid.app/pymol/modules/pmg_tk/startup/apbs _tools.py, line 1155, in runPsize size.runPsize(pdb_filename) File /sw/share/xtal/bin/psize.py, line 267, in runPsize self.parseInput(filename) File /sw/share/xtal/bin/psize.py, line 102, in parseInput self.parseLines(file.readlines()) File /sw/share/xtal/bin/psize.py, line
[PyMOL] spectrum, util.rainbow
Hi folks: Why is spectrum and the internal gui (which I assume invokes spectrum) so much faster than util.rainbow ? I like the util.rainbow default color scheme a bit better, but it takes forever for large complexes. Is there a simple way to get spectrum to mimic the rainbow color scheme? Thanks. Bill
[PyMOL] os x crash bug
Hi folks: I tried to make some symmetry objects of my molecule using the instructions in the manual. MacPymol (0.94b) choked on this, crashing the whole system. (OS X doesn't often crash, but when it does, it ain't pretty). When I rebooted I was unable to log into my account. Fortunately I got in through a root account I had enabled. The key to fixing this problem is to delete the following file: rm ~/LibraryPreferences/.GlobalPreferences.plist (note the dot before G) This seems to have no effect other than to make the display after logging in take a bit longer to compose itself, so there is no harm trying this if you run into the problem of being unable to log in after such a crash. HTH someone. Bill William G. Scott Associate Professor Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA Sinsheimer Laboratories University of California at Santa Cruz Santa Cruz, California 95064 USA
[PyMOL] Re: PyMOL 0.93 and MacOS X
Hi Michele: You don't have glut on OS X unless you installed it, for example, with fink. Looking at the fink pymol package (0.86) you will need to have installed these dependencies: Depends: libpng3-shlibs, numeric, tcltk, pmw (= 0.8.5-2), python (= 2.2.1-8), glut-shlibs (= 3.7-3) BuildDepends: libpng3, glut (= 3.7-3), db3 (= 3.3.11-23), readline (= 4.3-15), gdbm, gmp (= 4.1.2-11), expat, tcltk-dev, dlcompat-dev I have all of those and I still can't get 0.93 to compile. I am hoping the fink package will come out sometime soon. Meanwhile the native OS X pymol is really nice. It is well worth supporting I think... Fink seems really behind now in all things python. All of 2.3 is in the unstable tree, which seems odd to me given that 2.3 has been around for a year and is now part of OS X, albeit in the usual lobotomized form. I've used fink to compile python 2.3, numeric, scientific, scipy, etc., and they all seem to work fine. I'll try to hack on it a bit more, but it might be worth dropping Matt Stephenson a line. Bill Scott Date: Sun, 21 Dec 2003 15:39:52 -0500 To: pymol-users@lists.sourceforge.net From: Michele Fuortes mfuor...@med.cornell.edu Subject: [PyMOL] Re: PyMOL 0.93 and MacOS X Hi everybody, I know I'm an idiot, but I cannot build pymol 0.93 on Mac OS 10.3 to save my life. After getting and resolving a lot of gl.h and glut.h complaints now I'm stuck with: building 'pymol._cmd' extension . -L/usr/X11R6/lib -lGL -lGLU -lglut -lpng -o build/lib.darwin-7.2.0-Power_Macintosh-2.3/pymol/_cmd.so ld: can't locate file for: -lglut Any kind soul there willing to help me? Thanks Michele -- -- Michele Fuortes, M.D., Ph.D. Assistant Professor Departments of Surgery and of Cell and Developmental Biology Cornell University - Weill Medical College E-mail: mfuor...@removethismed.cornell.edu --__--__-- ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users End of PyMOL-users Digest William G. Scott Associate Professor Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA Sinsheimer Laboratories University of California at Santa Cruz Santa Cruz, California 95064 USA phone: +1-831-459-5367 (office) +1-831-459-5292 (lab) fax: +1-831-4593139 (fax) url: http://chemistry.ucsc.edu/~wgscott/
[PyMOL] favorite programming languages
Nat et al: 1. For fortran, there is also an f2py interface: http://cens.ioc.ee/projects/f2py2e/ 2. Some things just seem far easier in perl, like is there a one line python-equivalent for this: perl -pi -e 's/old/new/g' myfile.txt ? 3. There is now a python-objective C bridge if you want to use python to program OS X aqua interfaces: http://pyobjc.sourceforge.net/ Bill
[PyMOL] Re: PyMOL-users digest, Vol 1 #354 - 3 msgs
When I installed X-windows pymol 0.90 on OS X using fink and try to run it, I get an error /sw/bin/python: can't open file '/Users/delwarl/pymol/modules/pymol/__init__.py' another user reported a different such error: /sw/lib/pymol/modules/pymol/__init__.py:300: RuntimeWarning: Python C API version mismatch for module _cmd: This Python has API version 1012, module _cmd has version 1011. import _cmd The OS X native version 0.9 works great by the way! -- scowilg
[PyMOL] python as a satellite virus
Coincidently that was the exact same program that hosed my python installation too. I had set up my computer to run the python based AutoDock Tools interface to the docking program AutoDock. The installer for this program puts its own copy of python as a subdirectory in the main application directory and adds some environment variables to the .cshrc file. Apparently, some variable created here affected other python based apps. When I commented these out and opened a new xterm and ran pymol, everything worked normally. Moreover, my attempts to re-engineer the AutoDock installation ended in a complete morass. This is a great reason for installation software to at least allow you the option of using your already installed system python.
[PyMOL] pymol bug?
Hi: I have been making a few rendered movies to give my computer something to chew on at night. This morning I came in to fink failure at step 97 of 120 frames with the following error: MoviePNG: wrote high_closeup_0096.png Ray: tracing 1120x960 = 1075200 rays... Ray: processed 18531 graphics primitives in 0.04 sec. Ray: voxels: [0.51:39x34x21], [0.49:105x21x68], 59 MB, 1.04 sec. Ray: total rendering time: 22.34 sec. = 161.2 frames per hour. MoviePNG: wrote high_closeup_0097.png Ray: tracing 1120x960 = 1075200 rays... Ray: processed 18531 graphics primitives in 0.04 sec. BasisMakeMap: 576873576864 BasisMakeMap-Error: used too many extra vertices (this is a bug)... So I guess I am reporting the bug and asking if there is a work-around. Thanks. Bill Scott
[PyMOL] Apple X11 and pymol display.
Dear Dan: Are you using OS 10.2.3? You won't derive the benefits of the acceleration unless you have 10.2.3. Beyond that, I am at a loss. On my G4 iMac and even on my G3 ibook, x-windows based pymol has gone from virtually unusable to almost as good as the native version (which, by the way, can be downloaded here: http://prdownloads.sourceforge.net/pymol/pymol-0_84beta-bin- osx.dmg.gz?download ). I've cc-ed this to the pymol users list in case others have more suggestions. HTH, Bill Scott Message: 4 Date: Tue, 21 Jan 2003 12:58:46 -0800 From: Daniel E. Sabath dsab...@u.washington.edu To: Fink Users fink-us...@lists.sourceforge.net Subject: [Fink-users] PyMOL I've tried PyMOL (molecular modeling software), which now claims to be accelerated for OpenGL in the new Apple X-windows version, but for me, rotating protein structures is really slow. I was hoping to get something approaching free rotation like I get with rasmol. What kind of performance should I expect? I've tried it on a G4 DP/800 and a 17 flat panel iMac. Thanks, Dan -- Daniel E. Sabath, M.D., Ph.D. University of Washington Department of Laboratory Medicine http://www.labmed.washington.edu William G. Scott Associate Professor Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA Sinsheimer Laboratories University of California at Santa Cruz Santa Cruz, California 95064 USA phone: +1-831-459-5367 (office) +1-831-459-5292 (lab) fax: +1-831-4593139 (fax)
[PyMOL] Re: PyMOL-manual
On Tuesday, December 24, 2002, at 12:07 PM, pymol-users-requ...@lists.sourceforge.net wrote: 1. Suggestions for manual - nonspecialists perspective (James L. Kilgore) What I'd like to see written in an accessible form for a non-programmer is 1) A concise-but-ground-up description of what information is in a PDB file and other file formats including: http://www.rcsb.org/pdb/docs/format/pdbguide2.2/guide2.2_frame.html 2) How to read the file documentation from within PyMOL: - Go over the conventions for annotating structure files or at least link to something LESS THAN 300 PAGES LONG that explains the salient points). http://pymol.sourceforge.net/html/toc.html http://www.rubor.de/bioinf/pymol_tips.html http://tofu.tamu.edu/pymol/ http://pymol_tutorial.tripod.com/ - How to display protein sequence, including disulfide bond positions - conditions for determination (e.g. low pH often used in NMR, could affect structure). 3) Directions on how to select and alter display parameters for entities by connection like bound ligands, a selected number of contiguous polypeptide residues or one of several subunits, etc. 4) Instructions on options to selectively visualize interfaces between molecules. 5) Description and display of calculated features like electrostatic surfaces, hydrogen bond locations, etc. One possibility for making the software more user-friendly would be to organize a user Quick Start abbreviated file containing links to the main document. -- Jim Kilgore --__--__-- ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users End of PyMOL-users Digest William G. Scott Associate Professor Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA Sinsheimer Laboratories University of California at Santa Cruz Santa Cruz, California 95064 USA phone: +1-831-459-5367 (office) +1-831-459-5292 (lab) fax: +1-831-4593139 (fax)
[PyMOL] mixing pymol and powerpoint (or equivalent) in a presentation
Hi Folks: Awhile ago I suggested using hyperlinks in powerpoint to call pymol in order to embed this in a presentation. The disadvantages of this are that it requires a lag for pymol startup time, powerpoint warns you about the possibility that you are opening a macrovirus with a warning that you can't turn off in preferences even though it claims you can (as if pymol, rather than a microsoft product, was the software that could be mistaken for a virus), etc. I think someone already suggested running powerpoint from within pymol. This in fact works FAR better. Here's how to do it in OS X, although I imagine it would be similar in other operating systems but with slightly different syntax. First, define an alias, for example, alias pymol /Applications/PyMOL/Darwin/pymol.com -q -e /Users/homedirectory/pymol/alias.pml The -q and -e options give you a full screen that is blank. Here I tell it to read a file that contains further aliases in /Users/homedirectory/pymol/alias.pml Second, divide your powerpoint presentations up into subsets that flank the positions in which you would want to insert a pymol-based demonstration. Save each of these as a powerpoint show or package with a .pps suffix. Check the option to show at full screen when opening. (Keep a normal ppt version for future edits, as saving in this format isn't readily reversible.) Third, use the python os.system() command to open the powerpoint show file. [The os.system() command lets you run any operating system command, program, shell script, etc, eg: os.system(date) runs the unix date command, which can be very handy if you are like me and don't know what day and time it is.] On OS X you can use the open filename command as the equivalent of double-clicking a file to open it. I imagine there is something similar for windows but I don't know what it is. Here is part of my /Users/homedirectory/pymol/alias.pml file to give an idea for how this is implemented: alias 1, os.system(open /Users/wgscott/pymol/part_1/part_1.pps); alias 2, @/Users/wgscott/pymol/low.pml; alias 3, mstop; mclear; hide all; os.system(open /Users/wgscott/pymol/part_2/part_2.pps); alias 4, @/Users/wgscott/pymol/high.pml So when I invoke pymol at the command line using the above alias for pymol, I will get a black screen, blank, with the PyMOL prompt at the bottom left. If I issue 1 at the prompt, i.e., PyMOL 1 Then the file /Users/wgscott/pymol/part_1/part_1.pps opens. This will go faster if powerpoint has already been started. Then powerpoint takes over the screen and I go through the powerpoint presentation to the end. At the end, the file spontaneously shuts and I am back to the pymol screen. I have to click on it (although would prefer a better way) and then I type in the screen 2, i.e., PyMOL 2 and this runs another pymol script that plays a movie for me, /Users/wgscott/pymol/low.pml When I am done, I type 3, PyMOL 3 and we are back to the second part of my powerpoint presentation. mstop; mclear; hide all; clears the screen and movie memory and then the next presentation is opened again and I can go through it. Upon termination, I get a blank pymol screen back, click on it, enter 4, and I am into my next pymol movie, scripted in high.pml Both powerpoint and pymol remain open but in the background, so transition times are kept to a minimum. Bill William G. Scott Associate Professor Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA Sinsheimer Laboratories University of California at Santa Cruz Santa Cruz, California 95064 USA phone: +1-831-459-5367 (office) +1-831-459-5292 (lab) fax: +1-831-4593139 (fax)
[PyMOL] making movies (animated gifs)
There is a program called gif-builder (Mac OS 9 and 10) that is free and uses a variety of input types to make an animated gif which then is platform-independent. Sadly the link is broken http://www.macupdate.com/info.php/id/235 but if anyone needs it I can email you mine. Also if you have quicktime pro (PC version also exists) it is very simple to string together pictures to make quicktime movies. HTH William G. Scott Associate Professor Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA Sinsheimer Laboratories University of California at Santa Cruz Santa Cruz, California 95064 USA phone: +1-831-459-5367 (office) +1-831-459-5292 (lab) fax: +1-831-4593139 (fax)
[PyMOL] pymol movies (again, sorry) and windows
Dear Stephen Miller: Also, don't overlook the fact that pymol itself is a movie player. In powerpoint you can create what is called a hyperlink to pymol, and then you can just load in your macro (pml script) and your movie starts playing embedded in powerpoint. This is far better because you can move the molecule around while the movie plays, zoom in and out, etc. This gives a sense of immediacy in a presentation that is lost with an animated gif, or whatever movie player you might use. The hyperlink feature works better in windows powerpoint than mac powerpoint, BTW. William G. Scott Associate Professor Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA Sinsheimer Laboratories University of California at Santa Cruz Santa Cruz, California 95064 USA phone: +1-831-459-5367 (office) +1-831-459-5292 (lab) fax: +1-831-4593139 (fax)
[PyMOL] Re: PyMOL-users digest, Vol 1 #152 - 6 msgs
Folks, I have made a tough decision. Like many of you, I believe that PyMOL has the potential to become an effective software tool for bioinformatics, structural biology, computational chemistry, cheminformatics, and Science education. However, by myself, working in my spare time, I can not bring this project to fruition. The task is too large, and I am just one very busy guy. For much of the past year, I have been soliciting donations for the project as well as outside assistance in the hopes that sufficient resources would materialize to enable the effort to grow. While key contributions have come in via license purchases from companies such as Pfizer, Incyte, and Scherring-Plough, the aggregate response has been insufficient to warrant further pursuit of a purely volitional funding model. Hi Warren: I am sorry to hear this, but understand. I spend a lot of time worrying about which 7-11 I will have to rob to pay my mortgage. I do want to suggest however that some of us are only gearing up to the point where we can participate. I hadn't heard of pymol until a few months ago, really only started to grok it to the small extent that I have a few weeks ago (and thus have come to realize its value) and fully intend to purchase an academic license as a gesture of support as soon as the NIH cuts me a check. Meanwhile I am also learning python as well as how to build cocoa interfaces in OS X with the hope that I (or some hapless grad student) will be able to make a meaningful contribution to developing at least ancillary functionality for the program, like an OS X interface (this might be possible by the way thanks to the pyObjC project, if anyone is interested http://sourceforge.net/projects/pyobjc or via jython). I'll happily support this project to the best of my abilities, which, currently, aren't that great (I have a small group and correspondingly small amounts of funding). I am sure others in a better position than I will too as soon as word gets around. On a slightly more cynical level, crystallographers can get o for free, and will probably just stick with that unless a free pymol could approximately match its functionality. I think once that happens and people begin to overcome the inertial barrier to learning something new (I've used o and before that frodo since about 1988 and I still don't think I ever really learned it properly) and realize that it is in fact easier to use that the alternatives, the interest, collaborations and donations will improve. I'm not trying to talk you out of your decision but urge you to think about its timing. Finally, please realize that many of us email complaints or bug reports to be helpful, not because we are demanding immediate solutions. In addition, people are most vocal about what isn't working on a problem-oriented bb. This shouldn't be interpreted as a lack of fundamental gratitude for all of your hard labor. As some of the rest of us learn what is going on, hopefully we can take some of the pressure off you to answer every question. Programmers are really the unsung heros of crystallography, and they are the ones that make it possible for idiots like me who can't program their way out of a wet paper bag to do (what I hope is) interesting and productive science. I've often been amazed that crystallography has managed to maintain a free-software eithic (mosflm, ccp4, etc.) May I suggest that you apply to the NIH for a small business grant or something like that? I would happily contribute to the proposal, if I could provide anything meaningful, and I am sure that is the case with a lot of our colleagues. My guess is that you and pymol would be excellent candidates for funding. All the best, Bill Scott William G. Scott Associate Professor Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA Sinsheimer Laboratories University of California at Santa Cruz Santa Cruz, California 95064 USA phone: +1-831-459-5367 (office) +1-831-459-5292 (lab) fax: +1-831-4593139 (fax) -BEGIN GEEK CODE BLOCK- Version: 3.12 GS dpu s:+ a C--- U*--- P+ L+ E--- W-- N o-- K- w-- O- M+ V- PS+++ PE-- Y+ PGP-- t- 5- X R* tv-- b+++ DI++ D G-- e h r+++ y --END GEEK CODE BLOCK--
[PyMOL] OS X pymol version 0.84beta is excellent. Thank you!!!
I just noticed the OS X pymol native update, downloaded and installed it and it is great. It also makes me think that one day I might even install OS 10.2(there was no reason to if pymol didn't work). Nice job Warren! Thanks. Bill Scott William G. Scott Associate Professor Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA Sinsheimer Laboratories University of California at Santa Cruz Santa Cruz, California 95064 USA phone: +1-831-459-5367 (office) +1-831-459-5292 (lab) fax: +1-831-4593139 (fax) -BEGIN GEEK CODE BLOCK- Version: 3.12 GS dpu s:+ a C--- U*--- P+ L+ E--- W-- N o-- K- w-- O- M+ V- PS+++ PE-- Y+ PGP-- t- 5- X R* tv-- b+++ DI++ D G-- e h r+++ y --END GEEK CODE BLOCK--
Re: [PyMOL] OS X pymol version 0.84beta is excellent. Thank you!!!
I've put a screen-shot here if anyone wants to have a look. http://chemistry.ucsc.edu/~wgscott/xtal/page6.html Hopefully this will generate a little free publicity... On Monday, September 2, 2002, at 08:02 PM, Bronwyn Carlisle wrote: I second that motion. Very nice. Thank-you Bronwyn On Tuesday, September 3, 2002, at 02:49 PM, wgsc...@chemistry.ucsc.edu wrote: I just noticed the OS X pymol native update, downloaded and installed it and it is great. It also makes me think that one day I might even install OS 10.2(there was no reason to if pymol didn't work). Nice job Warren! Thanks. Bill Scott William G. Scott Associate Professor Department of Chemistry and Biochemistry and The Center for the Molecular Biology of RNA Sinsheimer Laboratories University of California at Santa Cruz Santa Cruz, California 95064 USA phone: +1-831-459-5367 (office) +1-831-459-5292 (lab) fax: +1-831-4593139 (fax) -BEGIN GEEK CODE BLOCK- Version: 3.12 GS dpu s:+ a C--- U*--- P+ L+ E--- W-- N o-- K- w-- O- M+ V- PS+++ PE-- Y+ PGP-- t- 5- X R* tv-- b+++ DI++ D G-- e h r+++ y --END GEEK CODE BLOCK-- --- This sf.net email is sponsored by: OSDN - Tired of that same old cell phone? Get a new here for FREE! https://www.inphonic.com/r.asp?r=sourceforge1refcode1=vs3390 ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users Bronwyn Carlisle Biochemistry Department University of Otago Dunedin New Zealand Tel 64 3 479 7704
