Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-05 Thread Jason Vertrees
Mike,

Many distros have PyMOL already in their package management system.
Have you tried that first?

I suggest downloading the latest code, v1.5.0.4, from the open-source
project page, if you want to build by hand.

To build, you need Python 2.7 or later and the process is very simple:

sudo python setup.py install
sudo python setup2.py install

Then, follow the directions for copying pymol to /usr/local/bin or
wherever you want.

If your machine does have shader issues and they don't automatically
disable, please let us know. You do not need a license to run the
open-source version. If the splash screen says that, I need to change
that.

I routinely build on Ubuntu without problems. Just make sure the
python you build with is the same that you run with.

Cheers,

-- Jason


On Thu, Oct 4, 2012 at 9:18 PM, Mike Marchywka marchy...@hotmail.com wrote:



 
 CC: pymol-users@lists.sourceforge.net
 From: li...@cowsandmilk.net
 Subject: Re: [PyMOL] I just built pymol, comes up but hangs on any attempt 
 to view a test pdb.
 Date: Thu, 4 Oct 2012 22:03:59 -0400
 To: marchy...@hotmail.com

 You don't need a license for the open source version.

 If you provided details on what OS/distribution you are building on, people 
 may try to replicate and understand why the python version hung. In my 
 experience, using setup.py generally worked out of the box.

 Well, I thought there may be a dev list or something for the most of this 
 stuff but in any case I'm on Ubuntu
 but that probably was not a big factor for some of the issues I ran into  I 
 just wanted to display
 2 molecules side by side and could not get jmol or gdis to work right away 
 and someone suggested
 this. ( fwiw, I have my own molecule viewer that IIRC I wrote to learn glut 
 on cygwin but
 I imagine that would be an even bigger chore to port LOL).

 If I can reconstruct, I apparently started with pymol-v1.5.0.1.tar and I 
 think at some point I ran
 autoreconf -l thinking I could go the configure route but then did python 
 setup.py  build and
 install in separeate steps., This seemed to work but attempts to display the 
 test pdb
 files never displayed anything, I could not get any more menu's and one core 
 was running
 at 100 percent until I killed it.

 Going the confugre route,  I think the first problem was with a bunch of 
 undefined CGO things.
 but you can see the changes below. The EXT thing was spurious probably as 
 there was a missing -lGLEW
 and I had to relink. This is obviously a raw dump of things that I tried 
 along with stuff that ultimately
 worked but fwiw.


 marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ find -mtime -2 -name *.h
 ./layer0/os_gl.h
 ./contrib/uiuc/plugins/include/molfile_plugin.h
 ./generated/include/ShaderText.h
 ./config.h
 marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ find -mtime -2 -name *.c
 ./layer0/ShaderText.c
 ./layer0/ShaderMgr.c
 ./layer3/Executive.c
 ./generated/src/ShaderText.c
 ./layer2/ObjectVolume.c
 ./layer1/CGO.c
 ./layer1/Scene.c
 marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$



 marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ grep -n -A 2 mjm `find 
 -mtime -2 -name *.c `
 ./layer0/ShaderMgr.c:97:  FeedbackAdd(G,  mjm forcing glew ok  Shaders 
 available.\n);
 ./layer0/ShaderMgr.c:98:// this should work but turn off for now mjm
 ./layer0/ShaderMgr.c-99-//if (GLEW_VERSION_2_0)
 ./layer0/ShaderMgr.c-100-if (1)
 --
 ./layer3/Executive.c:76:// mjm
 ./layer3/Executive.c-77-#includemodules/cealign/src/ce_types.h
 ./layer3/Executive.c-78-/* Externals for CEAlign  */
 --
 ./layer1/Scene.c:2910://mjm
 ./layer1/Scene.c-2911-  1.0F, 1.0F, 0.1F, 1.f
 ./layer1/Scene.c-2912-  };
 --
 ./layer1/Scene.c:1:   //mjm
 ./layer1/Scene.c-10001-//glBlitFramebufferEXT (0, 0, I-offscreen_width / 2, 
 I-offscreen_height,
 ./layer1/Scene.c-10002-   glBlitFramebuffer (0, 0, I-offscreen_width / 2, 
 I-offscreen_height,
 --
 ./layer1/Scene.c:10007://mjm
 ./layer1/Scene.c-10008-   glBlitFramebuffer (I-offscreen_width / 2, 0, 
 I-offscreen_width, I-offscreen_height,
 ./layer1/Scene.c-10009-   //glBlitFramebufferEXT (I-offscreen_width / 2, 0, 
 I-offscreen_width, I-offscreen_height,
 --
 ./layer1/Scene.c:10016:  //mjm
 ./layer1/Scene.c-10017- //glBlitFramebufferEXT (0, 0, I-offscreen_width, 
 I-offscreen_height,
 ./layer1/Scene.c-10018-   glBlitFramebuffer (0, 0, I-offscreen_width, 
 I-offscreen_height,
 --
 ./layer1/Scene.c:10024: //mjm
 ./layer1/Scene.c-10025-//  glBlitFramebufferEXT (0, 0, I-offscreen_width, 
 I-offscreen_height,
 ./layer1/Scene.c-10026-   glBlitFramebuffer (0, 0, I-offscreen_width, 
 I-offscreen_height,
 marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$


 marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ grep -n -A 2 mjm `find 
 -mtime -2 -name *.h `
 ./layer0/os_gl.h:6:// mjm
 ./layer0/os_gl.h-7-//#if defined(_PYMOL_IOS) || defined(ANDROID)
 ./layer0/os_gl.h-8-#if 1
 ./layer0/os_gl.h:9:// mjm
 ./layer0/os_gl.h-10-// 

Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-05 Thread Jason Vertrees
Hi Mike,

 I suggest downloading the latest code, v1.5.0.4, from the open-source
 project page, if you want to build by hand.

 see comments in my last post, I think that is what I did. Although
 autoreconf may not have helped anything.

I see the confusion now. We'll update SourceForge on our next release
so that it says the latest is v1.5.0.5, not v1.5.0.1. To get the
latest code, please do this:

svn co 
https://pymol.svn.sourceforge.net/svnroot/pymol/root/pymol/trunk/pymol
pymol


 To build, you need Python 2.7 or later and the process is very simple:

 sudo python setup.py install
 sudo python setup2.py install

 that was what created the first version I ran, it seemed fine until
 I tried to display a test pdb then it hung in 100 cpu on one core.

What kind of computer is this? What video card do you have?


 I don't really recall what the first version said, I think it was hypothetical
 as in may need license etc. The version from ./configure had a whole
 bunch of problems- simple syntax errors like missing comma to no
 link to the ccealignmodule but once I kluged around the CGO problems
 I think I was on my own :)

The make; make install setup was deprecated a long time ago which is
why this didn't work. We use Python distutils to build, as you've
found out.


 Anyway it seems fine now, although attempting to use fit on my
 2 molecules gave a non-intuitive result I think the one was so mangled that
 it had problems aligning them.

Glad it's working. Fit is a mathematically optimal superposition of
vector sets. Are your atom pairings correct? If you want to specify
them manually, check out Wizard  Pair Fitting. If you send me the
molecules I'm happy to take a look for you, too.


Cheers,

-- Jason





 On Thu, Oct 4, 2012 at 9:18 PM, Mike Marchywka marchy...@hotmail.com wrote:
 
 
 
  
  CC: pymol-users@lists.sourceforge.net
  From: li...@cowsandmilk.net
  Subject: Re: [PyMOL] I just built pymol, comes up but hangs on any 
  attempt to view a test pdb.
  Date: Thu, 4 Oct 2012 22:03:59 -0400
  To: marchy...@hotmail.com
 
  You don't need a license for the open source version.
 
  If you provided details on what OS/distribution you are building on, 
  people may try to replicate and understand why the python version hung. 
  In my experience, using setup.py generally worked out of the box.
 
  Well, I thought there may be a dev list or something for the most of this 
  stuff but in any case I'm on Ubuntu
  but that probably was not a big factor for some of the issues I ran into I 
  just wanted to display
  2 molecules side by side and could not get jmol or gdis to work right away 
  and someone suggested
  this. ( fwiw, I have my own molecule viewer that IIRC I wrote to learn 
  glut on cygwin but
  I imagine that would be an even bigger chore to port LOL).
 
  If I can reconstruct, I apparently started with pymol-v1.5.0.1.tar and I 
  think at some point I ran
  autoreconf -l thinking I could go the configure route but then did 
  python setup.py build and
  install in separeate steps., This seemed to work but attempts to display 
  the test pdb
  files never displayed anything, I could not get any more menu's and one 
  core was running
  at 100 percent until I killed it.
 
  Going the confugre route, I think the first problem was with a bunch of 
  undefined CGO things.
  but you can see the changes below. The EXT thing was spurious probably as 
  there was a missing -lGLEW
  and I had to relink. This is obviously a raw dump of things that I tried 
  along with stuff that ultimately
  worked but fwiw.
 
 
  marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ find -mtime -2 -name 
  *.h
  ./layer0/os_gl.h
  ./contrib/uiuc/plugins/include/molfile_plugin.h
  ./generated/include/ShaderText.h
  ./config.h
  marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ find -mtime -2 -name 
  *.c
  ./layer0/ShaderText.c
  ./layer0/ShaderMgr.c
  ./layer3/Executive.c
  ./generated/src/ShaderText.c
  ./layer2/ObjectVolume.c
  ./layer1/CGO.c
  ./layer1/Scene.c
  marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$
 
 
 
  marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ grep -n -A 2 mjm `find 
  -mtime -2 -name *.c `
  ./layer0/ShaderMgr.c:97: FeedbackAdd(G,  mjm forcing glew ok Shaders 
  available.\n);
  ./layer0/ShaderMgr.c:98:// this should work but turn off for now mjm
  ./layer0/ShaderMgr.c-99-// if (GLEW_VERSION_2_0)
  ./layer0/ShaderMgr.c-100- if (1)
  --
  ./layer3/Executive.c:76:// mjm
  ./layer3/Executive.c-77-#includemodules/cealign/src/ce_types.h
  ./layer3/Executive.c-78-/* Externals for CEAlign */
  --
  ./layer1/Scene.c:2910://mjm
  ./layer1/Scene.c-2911- 1.0F, 1.0F, 0.1F, 1.f
  ./layer1/Scene.c-2912- };
  --
  ./layer1/Scene.c:1: //mjm
  ./layer1/Scene.c-10001-//glBlitFramebufferEXT (0, 0, I-offscreen_width / 
  2, I-offscreen_height,
  ./layer1/Scene.c-10002- glBlitFramebuffer (0, 0, I-offscreen_width / 2, 
  I-offscreen_height,
  --
  

Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-05 Thread Mike Marchywka





 From: jason.vertr...@schrodinger.com
 Date: Fri, 5 Oct 2012 09:36:29 -0500
 Subject: Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to 
 view a test pdb.
 To: marchy...@hotmail.com
 CC: li...@cowsandmilk.net; pymol-users@lists.sourceforge.net

 Hi Mike,

  I suggest downloading the latest code, v1.5.0.4, from the open-source
  project page, if you want to build by hand.
 
  see comments in my last post, I think that is what I did. Although
  autoreconf may not have helped anything.

 I see the confusion now. We'll update SourceForge on our next release
 so that it says the latest is v1.5.0.5, not v1.5.0.1. To get the
 latest code, please do this:

 svn co https://pymol.svn.sourceforge.net/svnroot/pymol/root/pymol/trunk/pymol
 pymol


  To build, you need Python 2.7 or later and the process is very simple:
 
  sudo python setup.py install
  sudo python setup2.py install
 
  that was what created the first version I ran, it seemed fine until
  I tried to display a test pdb then it hung in 100 cpu on one core.

 What kind of computer is this? What video card do you have?

Dell Laitittude, but this is probably due to other issues.



  I don't really recall what the first version said, I think it was 
  hypothetical
  as in may need license etc. The version from ./configure had a whole
  bunch of problems- simple syntax errors like missing comma to no
  link to the ccealignmodule but once I kluged around the CGO problems
  I think I was on my own :)

 The make; make install setup was deprecated a long time ago which is
 why this didn't work. We use Python distutils to build, as you've
 found out.

I never use python and I probably never would have gotten .1 to work if
I had to deal with that :)  I'm not sure of the rationale here but while
you were phasing out a number of things I thought that make was
just lagging, intended for developers. 



  Anyway it seems fine now, although attempting to use fit on my
  2 molecules gave a non-intuitive result I think the one was so mangled that
  it had problems aligning them.

 Glad it's working. Fit is a mathematically optimal superposition of
 vector sets. Are your atom pairings correct? If you want to specify
 them manually, check out Wizard  Pair Fitting. If you send me the
 molecules I'm happy to take a look for you, too.

Thanks, I have no idea. Naive overlap was a bit confusing but I'm
dealing with simple things right now. I have 2 beta-carotene xtz files
created from scripts, one from the mmcif files on pdb.org and another
derived from jdftx after 300 position iterations using very
simple C and H models. In any case, I think part of the problem
is just using .53 for atomic/angstrom conversions but it looks like
fit results were bizarre: the 2 ends of the molecule were in about the same 
place
but the chains extended in opposite directions from there ( it wasn't 
immediately
obvious if I created some wierd linking errors based on this behaviour LOL).







 Cheers,

 -- Jason



 
 
  On Thu, Oct 4, 2012 at 9:18 PM, Mike Marchywka marchy...@hotmail.com 
  wrote:
  
  
  
   
   CC: pymol-users@lists.sourceforge.net
   From: li...@cowsandmilk.net
   Subject: Re: [PyMOL] I just built pymol, comes up but hangs on any 
   attempt to view a test pdb.
   Date: Thu, 4 Oct 2012 22:03:59 -0400
   To: marchy...@hotmail.com
  
   You don't need a license for the open source version.
  
   If you provided details on what OS/distribution you are building on, 
   people may try to replicate and understand why the python version hung. 
   In my experience, using setup.py generally worked out of the box.
  
   Well, I thought there may be a dev list or something for the most of 
   this stuff but in any case I'm on Ubuntu
   but that probably was not a big factor for some of the issues I ran into 
   I just wanted to display
   2 molecules side by side and could not get jmol or gdis to work right 
   away and someone suggested
   this. ( fwiw, I have my own molecule viewer that IIRC I wrote to learn 
   glut on cygwin but
   I imagine that would be an even bigger chore to port LOL).
  
   If I can reconstruct, I apparently started with pymol-v1.5.0.1.tar and I 
   think at some point I ran
   autoreconf -l thinking I could go the configure route but then did 
   python setup.py build and
   install in separeate steps., This seemed to work but attempts to display 
   the test pdb
   files never displayed anything, I could not get any more menu's and one 
   core was running
   at 100 percent until I killed it.
  
   Going the confugre route, I think the first problem was with a bunch of 
   undefined CGO things.
   but you can see the changes below. The EXT thing was spurious probably 
   as there was a missing -lGLEW
   and I had to relink. This is obviously a raw dump of things that I tried 
   along with stuff that ultimately
   worked but fwiw.
  
  
   

Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-04 Thread Mike Marchywka



fwiw, I never figured out why the out-of-the-box build hung  using the python 
approach
but I went through the ./cogifure, make make install route
and did get the test molecules to display. However, I ran into lots of problems 
with the ShaderMgr and
ccealignmodule and then finally the link was missing -lGLEW.

In any case it looks like I am all set but I thought the download would come 
closer to working right
away.

And the xyz files I wanted to display do appear to come up just great.

So do I need a license for the open source version?
Thanks.



note new address
Mike Marchywka 2295 Collinworth Drive Marietta GA 30062.
formerly 487 Salem Woods Drive Marietta GA 30067 404-788-1216 (C)- leave 
message 989-348-4796 (P)- emergency




 From: marchy...@hotmail.com
 To: pymol-users@lists.sourceforge.net
 Date: Thu, 4 Oct 2012 15:43:53 -0400
 Subject: [PyMOL] I just built pymol, comes up but hangs on any attempt to 
 view a test pdb.




 Is there some common reason for this?
 CPU on one core stays at 100 percent and no more menu's come up.

 The larger window says at the bottom that the version is supposed to be 
 licensed
 but I just pulled it down from sourceforge and not sure that this version 
 needs a key
 to work.

 Thanks.


 note new address
 Mike Marchywka 2295 Collinworth Drive Marietta GA 30062.
 formerly 487 Salem Woods Drive Marietta GA 30067 404-788-1216 (C)- leave 
 message 989-348-4796 (P)- emergency


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Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-04 Thread Mike Marchywka




 CC: pymol-users@lists.sourceforge.net
 From: li...@cowsandmilk.net
 Subject: Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to 
 view a test pdb.
 Date: Thu, 4 Oct 2012 22:03:59 -0400
 To: marchy...@hotmail.com

 You don't need a license for the open source version.

 If you provided details on what OS/distribution you are building on, people 
 may try to replicate and understand why the python version hung. In my 
 experience, using setup.py generally worked out of the box.

Well, I thought there may be a dev list or something for the most of this stuff 
but in any case I'm on Ubuntu
but that probably was not a big factor for some of the issues I ran into  I 
just wanted to display
2 molecules side by side and could not get jmol or gdis to work right away and 
someone suggested
this. ( fwiw, I have my own molecule viewer that IIRC I wrote to learn glut on 
cygwin but
I imagine that would be an even bigger chore to port LOL). 

If I can reconstruct, I apparently started with pymol-v1.5.0.1.tar and I think 
at some point I ran
autoreconf -l thinking I could go the configure route but then did python 
setup.py  build and
install in separeate steps., This seemed to work but attempts to display the 
test pdb
files never displayed anything, I could not get any more menu's and one core 
was running
at 100 percent until I killed it.

Going the confugre route,  I think the first problem was with a bunch of 
undefined CGO things.
but you can see the changes below. The EXT thing was spurious probably as there 
was a missing -lGLEW
and I had to relink. This is obviously a raw dump of things that I tried along 
with stuff that ultimately
worked but fwiw. 


marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ find -mtime -2 -name *.h
./layer0/os_gl.h
./contrib/uiuc/plugins/include/molfile_plugin.h
./generated/include/ShaderText.h
./config.h
marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ find -mtime -2 -name *.c
./layer0/ShaderText.c
./layer0/ShaderMgr.c
./layer3/Executive.c
./generated/src/ShaderText.c
./layer2/ObjectVolume.c
./layer1/CGO.c
./layer1/Scene.c
marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ 



marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ grep -n -A 2 mjm `find 
-mtime -2 -name *.c `
./layer0/ShaderMgr.c:97:      FeedbackAdd(G,  mjm forcing glew ok  Shaders 
available.\n);
./layer0/ShaderMgr.c:98:// this should work but turn off for now mjm
./layer0/ShaderMgr.c-99-//    if (GLEW_VERSION_2_0) 
./layer0/ShaderMgr.c-100-    if (1) 
--
./layer3/Executive.c:76:// mjm
./layer3/Executive.c-77-#includemodules/cealign/src/ce_types.h
./layer3/Executive.c-78-/* Externals for CEAlign  */
--
./layer1/Scene.c:2910://mjm
./layer1/Scene.c-2911-  1.0F, 1.0F, 0.1F, 1.f
./layer1/Scene.c-2912-      };      
--
./layer1/Scene.c:1:   //mjm
./layer1/Scene.c-10001-//glBlitFramebufferEXT (0, 0, I-offscreen_width / 2, 
I-offscreen_height,
./layer1/Scene.c-10002-   glBlitFramebuffer (0, 0, I-offscreen_width / 2, 
I-offscreen_height,
--
./layer1/Scene.c:10007://mjm
./layer1/Scene.c-10008-   glBlitFramebuffer (I-offscreen_width / 2, 0, 
I-offscreen_width, I-offscreen_height,
./layer1/Scene.c-10009-   //glBlitFramebufferEXT (I-offscreen_width / 2, 0, 
I-offscreen_width, I-offscreen_height,
--
./layer1/Scene.c:10016:  //mjm
./layer1/Scene.c-10017- //glBlitFramebufferEXT (0, 0, I-offscreen_width, 
I-offscreen_height,
./layer1/Scene.c-10018-   glBlitFramebuffer (0, 0, I-offscreen_width, 
I-offscreen_height,
--
./layer1/Scene.c:10024: //mjm
./layer1/Scene.c-10025-//  glBlitFramebufferEXT (0, 0, I-offscreen_width, 
I-offscreen_height,
./layer1/Scene.c-10026-   glBlitFramebuffer (0, 0, I-offscreen_width, 
I-offscreen_height,
marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ 


marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ grep -n -A 2 mjm `find 
-mtime -2 -name *.h `
./layer0/os_gl.h:6:// mjm
./layer0/os_gl.h-7-//#if defined(_PYMOL_IOS) || defined(ANDROID)
./layer0/os_gl.h-8-#if 1
./layer0/os_gl.h:9:// mjm
./layer0/os_gl.h-10-// #define _PYMOL_PURE_OPENGL_ES
./layer0/os_gl.h-11-#define _PYMOL_CGO_DRAWARRAYS
--
./contrib/uiuc/plugins/include/molfile_plugin.h:249:// mjm - these are in the 
games lass LOL
./contrib/uiuc/plugins/include/molfile_plugin.h-250-int have_esp;
./contrib/uiuc/plugins/include/molfile_plugin.h-251-int have_npa;
--
./contrib/uiuc/plugins/include/molfile_plugin.h:312:// mjm
./contrib/uiuc/plugins/include/molfile_plugin.h-313-int multiplicity;
./contrib/uiuc/plugins/include/molfile_plugin.h-314-int * esp_charges;  
marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ 



marchywka@marchywka-Latitude-E6510:~/d/pymol/pymol$ cat relink
gcc --verbose -shared  -fPIC -DPIC  -Wl,--no-as-needed -Wl,--whole-archive  
contrib/uiuc/plugins/molfile_plugin/src/.libs/libmolfile_plugin0.a 
modules/cealign/src/ccealignmodule.o ov/src/.libs/libov.a 
layer0/.libs/liblayer0.a layer1/.libs/liblayer1.a layer2/.libs/liblayer2.a 
layer3/.libs/liblayer3.a 

Re: [PyMOL] I just built pymol, comes up but hangs on any attempt to view a test pdb.

2012-10-04 Thread David Hall
You don't need a license for the open source version.

If you provided details on what OS/distribution you are building on, people may 
try to replicate and understand why the python version hung. In my experience, 
using setup.py generally worked out of the box.

-David

On Oct 4, 2012, at 9:22 PM, Mike Marchywka marchy...@hotmail.com wrote:

 
 
 
 fwiw, I never figured out why the out-of-the-box build hung  using the python 
 approach
 but I went through the ./cogifure, make make install route
 and did get the test molecules to display. However, I ran into lots of 
 problems with the ShaderMgr and
 ccealignmodule and then finally the link was missing -lGLEW.
 
 In any case it looks like I am all set but I thought the download would come 
 closer to working right
 away.
 
 And the xyz files I wanted to display do appear to come up just great.
 
 So do I need a license for the open source version?
 Thanks.
 
 
 
 note new address
 Mike Marchywka 2295 Collinworth Drive Marietta GA 30062.
 formerly 487 Salem Woods Drive Marietta GA 30067 404-788-1216 (C)- leave 
 message 989-348-4796 (P)- emergency
 
 
 
 
 From: marchy...@hotmail.com
 To: pymol-users@lists.sourceforge.net
 Date: Thu, 4 Oct 2012 15:43:53 -0400
 Subject: [PyMOL] I just built pymol, comes up but hangs on any attempt to 
 view a test pdb.
 
 
 
 
 Is there some common reason for this?
 CPU on one core stays at 100 percent and no more menu's come up.
 
 The larger window says at the bottom that the version is supposed to be 
 licensed
 but I just pulled it down from sourceforge and not sure that this version 
 needs a key
 to work.
 
 Thanks.
 
 
 note new address
 Mike Marchywka 2295 Collinworth Drive Marietta GA 30062.
 formerly 487 Salem Woods Drive Marietta GA 30067 404-788-1216 (C)- leave 
 message 989-348-4796 (P)- emergency
 
 
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