Re: [PyMOL] Fwd: visualization problems with pymol

[Osvaldo Martin]

Hi Carolina,

I am glad that your problem is solved now. I just realize that we have been
discussing in private, leaving the PyMOL community aside. When sending
e-mail to the PyMOL mailing list always "Reply to All". In that way you
ensure that all the PyMOL community could participate and help you and also
we keep a record for future reference of you or others. Hence, I am
re-sending the solution for your problem.

I suggested that you could have some problem with your graphics driver and
that to could solve it by running the following command.

set use_shaders, 0


Cheers,
Osvaldo

On Sat, Oct 3, 2015 at 3:16 AM, Carolina Stephania Castro Segura <
stephania.castro.seg...@gmail.com> wrote:

> It works !!!
>
> I will check my pymol version.
>
> Thanks a lot :D
> Carolina
> El sep 30, 2015 12:51 PM, "Osvaldo Martin" 
> escribió:
>
>> Could you check changing this setting?
>>
>> set use_shaders, 0
>>
>> I guess you have some problem with your graphics driver. Please, also
>> notice that PyMOL version 1.7.5 is a developmental version, the last stable
>> version is 1.7.6.
>>
>>
>> Cheers,
>> Osvaldo.
>>
>>
>>
>> On Wed, Sep 30, 2015 at 7:00 PM, Carolina Stephania Castro Segura <
>> stephania.castro.seg...@gmail.com> wrote:
>>
>>> I´m ussing the PyMOL 1.7.5 is the same that i installed in my computer.
>>> But the problem is just in one. The tree computers have windows 7.
>>>
>>> Thanks
>>>
>>> 2015-09-29 17:57 GMT-05:00 Osvaldo Martin :
>>>
 Which version of pymol are you using?
 El sep 29, 2015 10:21 p.m., "Carolina Stephania Castro Segura" <
 stephania.castro.seg...@gmail.com> escribió:

>
> Thanks!
>
> I do it , but pymol saids:
>
> "Unknown setting"
>
> i check and it isn't in the settings list!
>
>
> Caro
>
> 2015-09-29 14:55 GMT-05:00 Osvaldo Martin :
>
>> Hi,
>>
>> Could you try changing this setting
>>
>> set cylinder_shader_ff_workaround, 1
>>
>> before changing the representation to sticks?
>>
>>
>> Cheers,
>> Osvaldo
>>
>>
>>
>> On Tue, Sep 29, 2015 at 9:40 PM, Carolina Stephania Castro Segura <
>> stephania.castro.seg...@gmail.com> wrote:
>>
>>> I try with the sdf that you send to me (thanks).
>>> The representation "sticks" didnt appear, and that is strange,
>>> because i have pymol in two computers and this problem is just in one.
>>> There is something that i can do to fix it ?
>>>
>>> Thanks :D
>>>
>>>
>>> 2015-09-29 13:37 GMT-05:00 Osvaldo Martin :
>>>
 Hi Carolina,

 Can you reproduce the problem with other sdf files? (for example
 with the one attached). Could your file be corrupted?

 Cheers,
 Osvaldo,


 On Tue, Sep 29, 2015 at 8:15 PM, Carolina Stephania Castro Segura <
 stephania.castro.seg...@gmail.com> wrote:

>
> -- Forwarded message --
> From: Carolina Stephania Castro Segura <
> stephania.castro.seg...@gmail.com>
> Date: 2015-09-29 13:05 GMT-05:00
> Subject: visualization problems with pymol
> To: pymol-users@lists.sourceforge.net
>
>
> Hi pymol users!
>
> I installed pymol in a Windows 7 (32 bits). I can load a file
> without problems to pymol, but when i try to change the lines for 
> sticks
> the molecule (a .sdf file)  disappear ... so i have been trying to 
> change
> the representations, but pymol online recognize lines.
> Did anyone knows how to fix it ?
>
> Thanks a lot
> Carolina Castro
>
>
>
> --
>
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>>>
>>
>
>>>
>>
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Re: [PyMOL] Fwd: visualization problems with pymol

[Osvaldo Martin]

Hi Carolina,

Can you reproduce the problem with other sdf files? (for example with the
one attached). Could your file be corrupted?

Cheers,
Osvaldo,


On Tue, Sep 29, 2015 at 8:15 PM, Carolina Stephania Castro Segura <
stephania.castro.seg...@gmail.com> wrote:

>
> -- Forwarded message --
> From: Carolina Stephania Castro Segura 
> Date: 2015-09-29 13:05 GMT-05:00
> Subject: visualization problems with pymol
> To: pymol-users@lists.sourceforge.net
>
>
> Hi pymol users!
>
> I installed pymol in a Windows 7 (32 bits). I can load a file without
> problems to pymol, but when i try to change the lines for sticks the
> molecule (a .sdf file)  disappear ... so i have been trying to change the
> representations, but pymol online recognize lines.
> Did anyone knows how to fix it ?
>
> Thanks a lot
> Carolina Castro
>
>
>
> --
>
> ___
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>


Structure2D_CID_94630.sdf
Description: StarMath document
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