[R] Problem R markdown document

2015-08-27 Thread Conklin, Mike (GfK)
I have successfully done this many times using RStudio's rmarkdown capabilities 
and knitting the document to HTML or Word. However, I am running into this 
error today.

C:/Program Files/RStudio/bin/pandoc/pandoc FusionTestsAugust25.utf8.md --to 
docx --from 
markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash-implicit_figures
 --output FusionTestsAugust25.docx --highlight-style tango 
pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed
Error: pandoc document conversion failed with error 1

Same error occurs whether to knitting to Word or to HTML.  It looks like the a 
memory issue but this whole process is of limited use if the entire analysis 
runs but the document can't be output.  If anyone has any ideas on how to deal 
with memory issues in the final step of pandoc conversion or can point me to 
where to look for this I would appreciate it.

Best regards,

Mike


--
W. Michael Conklin
Executive Vice President
Marketing  Data Sciences - North America
GfK | 8401 Golden Valley Road | Minneapolis | MN | 55427
mike.conk...@gfk.com 
T +1 763 417 4545 | M +1 612 567 8287 
www.gfk.com 

__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Problem R markdown document

2015-08-27 Thread boB Rudis
Try increasing the memory for pandoc via knitr YAML options:

--
title: TITLE
output:
  html_document:
pandoc_args: [
  +RTS, -K64m,
  -RTS
]
---

ref: http://stackoverflow.com/a/28015894/1457051

you can bump up those #'s IIRC, too, if they don't work at first.

On Thu, Aug 27, 2015 at 1:55 PM, Conklin, Mike (GfK)
mike.conk...@gfk.com wrote:
 I have successfully done this many times using RStudio's rmarkdown 
 capabilities and knitting the document to HTML or Word. However, I am running 
 into this error today.

 C:/Program Files/RStudio/bin/pandoc/pandoc FusionTestsAugust25.utf8.md --to 
 docx --from 
 markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash-implicit_figures
  --output FusionTestsAugust25.docx --highlight-style tango
 pandoc.exe: getMBlocks: VirtualAlloc MEM_COMMIT failed
 Error: pandoc document conversion failed with error 1

 Same error occurs whether to knitting to Word or to HTML.  It looks like the 
 a memory issue but this whole process is of limited use if the entire 
 analysis runs but the document can't be output.  If anyone has any ideas on 
 how to deal with memory issues in the final step of pandoc conversion or can 
 point me to where to look for this I would appreciate it.

 Best regards,

 Mike


 --
 W. Michael Conklin
 Executive Vice President
 Marketing  Data Sciences - North America
 GfK | 8401 Golden Valley Road | Minneapolis | MN | 55427
 mike.conk...@gfk.com
 T +1 763 417 4545 | M +1 612 567 8287
 www.gfk.com

 __
 R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.

__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.