subject:"Re\: \[R\] Installing package into..."

Re: [R] Installing package into...

2019-03-12 Thread Rui Barradas


Hello,

Yes, the lib argument works in RStudio.

Hope this helps,

Rui Barradas

Às 16:24 de 12/03/2019, Michael Dewey escreveu:

Dear Steven

If you use install,packages() from within R there is a lib argument. I 
do not use RStudio so not sure how it works there.


Michael

On 12/03/2019 15:05, Steven Yen wrote:

I install package using either the command line or Tools -> Install
packages... (in RStudio) and get a non-fatal message saying...
Installing package into ‘C:/Users/xuhaer/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
I know it is not a fatal message. But, is there a way to do a cleaner
installation without getting such message? Thanks.





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Re: [R] Installing package into...

2019-03-12 Thread Michael Dewey


Dear Steven

If you use install,packages() from within R there is a lib argument. I 
do not use RStudio so not sure how it works there.


Michael

On 12/03/2019 15:05, Steven Yen wrote:

I install package using either the command line or Tools -> Install
packages... (in RStudio) and get a non-fatal message saying...
Installing package into ‘C:/Users/xuhaer/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
I know it is not a fatal message. But, is there a way to do a cleaner
installation without getting such message? Thanks.



--
Michael
http://www.dewey.myzen.co.uk/home.html

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Re: [R] Installing package into...

2019-03-12 Thread Duncan Murdoch


On 12/03/2019 11:05 a.m., Steven Yen wrote:

I install package using either the command line or Tools -> Install
packages... (in RStudio) and get a non-fatal message saying...
Installing package into ‘C:/Users/xuhaer/Documents/R/win-library/3.5’
(as ‘lib’ is unspecified)
I know it is not a fatal message. But, is there a way to do a cleaner
installation without getting such message? Thanks.



Have you tried specifying the library?  Then R wouldn't tell you its guess.

Duncan Murdoch

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Re: [R] installing package lme4

2017-08-18 Thread Doran, Harold

?install.packages

On 8/18/17, 7:39 AM, "Lucy McMahon"  wrote:

>I am hoping to run a generalised linear mixed effect model but I don't
>seem to have access to package lme4.
>
>
>library (lme4)
>Error in library(lme4) : there is no package called �lme4�
>
>
>I'm unsure of how to go about installing this package and I haven't been
>able to find much online either.
>
>
>I am using R version 3.4.1 on a Windows 10 laptop.
>
>
>Any help would be appreciated, thanks.
>
>
>   [[alternative HTML version deleted]]
>

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Re: [R] installing package 'rqpd' (Regression quantiles for panel data) on windows

2014-08-01 Thread Duncan Murdoch


On 01/08/2014 7:48 AM, Roy Sasson wrote:

hello R community,
i am trying to install rqpd package on windows, using the following command:

install.packages(rqpd,repos=http://R-Forge.R-project.org;)

however, i get the following message:

Warning: unable to access index for repository
http://R-Forge.R-project.org/bin/windows/contrib/2.15
Warning message:
package ‘rqpd’ is not available (for R version 2.15.1)

i have tried using different versions of R (newer and older), but with no
luck.

I have also checked out the following thread -
http://r.789695.n4.nabble.com/installing-package-rqpd-Regression-quantiles-for-panel-data-td4668594.html

but it is not so clear how this problem was resolved eventually.

would appreciate any assistance


You don't say what platform you're working on. On Windows, there is no 
binary for rqpd, but you can get the source. This appears to be an 
R-forge bug, because it will build from source without error. You should 
report this to R-forge. In the meantime, use type=source when you do 
the install. You shouldn't need any special tools to do this, since it's 
a pure R package, no compiled code.


Duncan Murdoch

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Re: [R] installing package 'rqpd' (Regression quantiles for panel data) on windows

2014-08-01 Thread Prof Brian Ripley

On 01/08/2014 14:31, Duncan Murdoch wrote:

On 01/08/2014 7:48 AM, Roy Sasson wrote:

hello R community,
i am trying to install rqpd package on windows, using the following
command:

install.packages(rqpd,repos=http://R-Forge.R-project.org;)

however, i get the following message:

Warning: unable to access index for repository
http://R-Forge.R-project.org/bin/windows/contrib/2.15
Warning message:
package ‘rqpd’ is not available (for R version 2.15.1)

i have tried using different versions of R (newer and older), but with no
luck.

I have also checked out the following thread -
http://r.789695.n4.nabble.com/installing-package-rqpd-Regression-quantiles-for-panel-data-td4668594.html

but it is not so clear how this problem was resolved eventually.

would appreciate any assistance

You don't say what platform you're working on. On Windows, there is no

Actually he did, but he did not give the 'an a minimum' information
asked for in the posting guide.

binary for rqpd, but you can get the source. This appears to be an
R-forge bug, because it will build from source without error. You should
report this to R-forge. In the meantime, use type=source when you do
the install. You shouldn't need any special tools to do this, since it's
a pure R package, no compiled code.

Not an R-Forge bug as his R is too old: R-Forge only builds binary
packages for current R. As the posting guide asked, update R before
posting

Re: [R] installing package 'rqpd' (Regression quantiles for panel data) on windows

2014-08-01 Thread Duncan Murdoch


On 01/08/2014 9:50 AM, Prof Brian Ripley wrote:

On 01/08/2014 14:31, Duncan Murdoch wrote:
 On 01/08/2014 7:48 AM, Roy Sasson wrote:
 hello R community,
 i am trying to install rqpd package on windows, using the following
 command:

 install.packages(rqpd,repos=http://R-Forge.R-project.org;)

 however, i get the following message:

 Warning: unable to access index for repository
 http://R-Forge.R-project.org/bin/windows/contrib/2.15
 Warning message:
 package ‘rqpd’ is not available (for R version 2.15.1)

 i have tried using different versions of R (newer and older), but with no
 luck.

 I have also checked out the following thread -
 
http://r.789695.n4.nabble.com/installing-package-rqpd-Regression-quantiles-for-panel-data-td4668594.html


 but it is not so clear how this problem was resolved eventually.

 would appreciate any assistance

 You don't say what platform you're working on. On Windows, there is no

Actually he did, but he did not give the 'an a minimum' information
asked for in the posting guide.

 binary for rqpd, but you can get the source. This appears to be an
 R-forge bug, because it will build from source without error. You should
 report this to R-forge. In the meantime, use type=source when you do
 the install. You shouldn't need any special tools to do this, since it's
 a pure R package, no compiled code.

Not an R-Forge bug as his R is too old: R-Forge only builds binary
packages for current R.  As the posting guide asked, update R before
posting 


We both missed part of the posting:  he said he tried newer R versions 
too.  And I get this (on Windows):


 install.packages(rqpd,repos=http://R-Forge.R-project.org;)

   package ‘rqpd’ is available as a source package but not as a binary

Warning message:
package ‘rqpd’ is not available (for R version 3.1.1 Patched)

The log on R-forge shows that it was last built for Windows in 2012.  So 
I think this really is an R-forge bug...


Duncan Murdoch


See also (as per the posting guide):

http://cran.r-project.org/bin/windows/base/rw-FAQ.html#How-can-I-get-a-binary-version-of-a-package_003f
http://cran.r-project.org/bin/windows/base/rw-FAQ.html#No-binary-packages-appear-to-be-available-for-my-version-of-R



 Duncan Murdoch

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Re: [R] installing package 'rqpd' (Regression quantiles for panel data)

2014-03-03 Thread fe_jasa

Dear Manish

I have installed from the file I send you. Doing directly from CRAN
doesn't result.
After installation you can see the help (help(rqpd).

Sincerely

PS: it works on last version of R in Linux (ubtuntu)

-- 

João Sousa Andrade
jasa04011...@gmail.com


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Re: [R] installing package from source

2013-10-24 Thread David Winsemius


On Oct 23, 2013, at 7:53 PM, Long Vo wrote:

 Hi R users,
 Currently I want to fit a FIGARCH model to a dataset. The only package that
 allow for it that I could find is fGarch. However it seems that the FIGARCH
 model class fitting of this package has been moved to Oxmetrics. I tried to
 install the old versions of it using 'tar.gz' files from CRAN archive 
 http://cran.r-project.org/src/contrib/Archive/fGarch/
 http://cran.r-project.org/src/contrib/Archive/fGarch/   but not sure how
 it works. I tried
 
 install.packages(myfilepath\fGarch_260.71.tar.gz, repos = NULL,
 type=source)
 
 And received this error:
 
 Warning: invalid package './I:_R filesGarch_260.71.tar.gz'
 Error: ERROR: no packages specified
 Warning messages:
 1: running command 'I:/01_RFI~1/INSTAL~1/R-30~1.1/bin/i386/R CMD INSTALL
 -l I:\01_R files\installment\R-3.0.1\library ./I:_R files
 Garch_260.71.tar.gz' had status 1 
 2: In install.packages(I:\001_R files\fGarch_260.71.tar.gz, repos = NULL, 
 :
  installation of package ‘./I:_R filesGarch_260.71.tar.gz’ had non-zero
 exit status
 
 Any helps on this?
 

I've aways specified the package names and their locations separately in my 
call to install.packages, but I don't know if that is always needed. It also 
appears that you have no / separator between your path and the file name.

 Regards,
 Long
 
 
 
 --
 View this message in context: 
 http://r.789695.n4.nabble.com/installing-package-from-source-tp4678928.html
 Sent from the R help mailing list archive at Nabble.com.
 
 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.

David Winsemius
Alameda, CA, USA

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Re: [R] installing package from source

2013-10-24 Thread Marc Schwartz


On Oct 24, 2013, at 11:38 AM, David Winsemius dwinsem...@comcast.net wrote:

 
 On Oct 23, 2013, at 7:53 PM, Long Vo wrote:
 
 Hi R users,
 Currently I want to fit a FIGARCH model to a dataset. The only package that
 allow for it that I could find is fGarch. However it seems that the FIGARCH
 model class fitting of this package has been moved to Oxmetrics. I tried to
 install the old versions of it using 'tar.gz' files from CRAN archive 
 http://cran.r-project.org/src/contrib/Archive/fGarch/
 http://cran.r-project.org/src/contrib/Archive/fGarch/   but not sure how
 it works. I tried
 
 install.packages(myfilepath\fGarch_260.71.tar.gz, repos = NULL,
 type=source)
 
 And received this error:
 
 Warning: invalid package './I:_R filesGarch_260.71.tar.gz'
 Error: ERROR: no packages specified
 Warning messages:
 1: running command 'I:/01_RFI~1/INSTAL~1/R-30~1.1/bin/i386/R CMD INSTALL
 -l I:\01_R files\installment\R-3.0.1\library ./I:_R files
 Garch_260.71.tar.gz' had status 1 
 2: In install.packages(I:\001_R files\fGarch_260.71.tar.gz, repos = NULL, 
 :
 installation of package ‘./I:_R filesGarch_260.71.tar.gz’ had non-zero
 exit status
 
 Any helps on this?
 
 
 I've aways specified the package names and their locations separately in my 
 call to install.packages, but I don't know if that is always needed. It also 
 appears that you have no / separator between your path and the file name.


Long is trying to install a rather old version of the source R package that 
contains FORTRAN code on Windows.

Besides the immediate error in the way the path was constructed in the 
install.packages() call, using a single backslash, which needs to be escaped:

  
http://cran.r-project.org/bin/windows/base/rw-FAQ.html#R-can_0027t-find-my-file

there are likely to be issues from trying to install an old version of the 
package on a newer version of R, perhaps the lack of the requisite development 
tools for compiling FORTRAN:

  
http://cran.r-project.org/bin/windows/base/rw-FAQ.html#Can-I-install-packages-into-libraries-in-this-version_003f

and other issues as well.

Depending upon how far back you need to go in package versions, there may be 
pre-compiled Windows binaries (.zip files) available in directories here:

  http://cran.r-project.org/bin/windows/contrib/



Regards,

Marc Schwartz


 
 Regards,
 Long

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Re: [R] installing package from source

2013-10-24 Thread Prof Brian Ripley


On 24/10/2013 18:25, Marc Schwartz wrote:


On Oct 24, 2013, at 11:38 AM, David Winsemius dwinsem...@comcast.net wrote:



On Oct 23, 2013, at 7:53 PM, Long Vo wrote:


Hi R users,
Currently I want to fit a FIGARCH model to a dataset. The only package that
allow for it that I could find is fGarch. However it seems that the FIGARCH
model class fitting of this package has been moved to Oxmetrics. I tried to
install the old versions of it using 'tar.gz' files from CRAN archive
http://cran.r-project.org/src/contrib/Archive/fGarch/
http://cran.r-project.org/src/contrib/Archive/fGarch/   but not sure how
it works. I tried

install.packages(myfilepath\fGarch_260.71.tar.gz, repos = NULL,
type=source)

And received this error:

Warning: invalid package './I:_R filesGarch_260.71.tar.gz'
Error: ERROR: no packages specified
Warning messages:
1: running command 'I:/01_RFI~1/INSTAL~1/R-30~1.1/bin/i386/R CMD INSTALL
-l I:\01_R files\installment\R-3.0.1\library ./I:_R files
Garch_260.71.tar.gz' had status 1
2: In install.packages(I:\001_R files\fGarch_260.71.tar.gz, repos = NULL,
:
installation of package ‘./I:_R filesGarch_260.71.tar.gz’ had non-zero
exit status

Any helps on this?



I've aways specified the package names and their locations separately in my call to 
install.packages, but I don't know if that is always needed. It also appears that you 
have no / separator between your path and the file name.



Long is trying to install a rather old version of the source R package that 
contains FORTRAN code on Windows.

Besides the immediate error in the way the path was constructed in the 
install.packages() call, using a single backslash, which needs to be escaped:

   
http://cran.r-project.org/bin/windows/base/rw-FAQ.html#R-can_0027t-find-my-file

there are likely to be issues from trying to install an old version of the 
package on a newer version of R, perhaps the lack of the requisite development 
tools for compiling FORTRAN:

   
http://cran.r-project.org/bin/windows/base/rw-FAQ.html#Can-I-install-packages-into-libraries-in-this-version_003f

and other issues as well.

Depending upon how far back you need to go in package versions, there may be 
pre-compiled Windows binaries (.zip files) available in directories here:

   http://cran.r-project.org/bin/windows/contrib/


I don't think so: see NEWS

CHANGES IN R 3.0.0:

  SIGNIFICANT USER-VISIBLE CHANGES:

• Packages need to be (re-)installed under this version (3.0.0) of
  R.

so only those under bin/windows/contrib/3.0 will work, and there is only 
one for each package.



--
Brian D. Ripley,  rip...@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel:  +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax:  +44 1865 272595

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Re: [R] installing package from source

2013-10-24 Thread Marc Schwartz


On Oct 24, 2013, at 1:11 PM, Prof Brian Ripley rip...@stats.ox.ac.uk wrote:

 On 24/10/2013 18:25, Marc Schwartz wrote:
 
 On Oct 24, 2013, at 11:38 AM, David Winsemius dwinsem...@comcast.net wrote:
 
 
 On Oct 23, 2013, at 7:53 PM, Long Vo wrote:
 
 Hi R users,
 Currently I want to fit a FIGARCH model to a dataset. The only package that
 allow for it that I could find is fGarch. However it seems that the FIGARCH
 model class fitting of this package has been moved to Oxmetrics. I tried to
 install the old versions of it using 'tar.gz' files from CRAN archive
 http://cran.r-project.org/src/contrib/Archive/fGarch/
 http://cran.r-project.org/src/contrib/Archive/fGarch/   but not sure how
 it works. I tried
 
 install.packages(myfilepath\fGarch_260.71.tar.gz, repos = NULL,
 type=source)
 
 And received this error:
 
 Warning: invalid package './I:_R filesGarch_260.71.tar.gz'
 Error: ERROR: no packages specified
 Warning messages:
 1: running command 'I:/01_RFI~1/INSTAL~1/R-30~1.1/bin/i386/R CMD INSTALL
 -l I:\01_R files\installment\R-3.0.1\library ./I:_R files
 Garch_260.71.tar.gz' had status 1
 2: In install.packages(I:\001_R files\fGarch_260.71.tar.gz, repos = NULL,
 :
 installation of package ‘./I:_R filesGarch_260.71.tar.gz’ had non-zero
 exit status
 
 Any helps on this?
 
 
 I've aways specified the package names and their locations separately in my 
 call to install.packages, but I don't know if that is always needed. It 
 also appears that you have no / separator between your path and the file 
 name.
 
 
 Long is trying to install a rather old version of the source R package that 
 contains FORTRAN code on Windows.
 
 Besides the immediate error in the way the path was constructed in the 
 install.packages() call, using a single backslash, which needs to be escaped:
 
   
 http://cran.r-project.org/bin/windows/base/rw-FAQ.html#R-can_0027t-find-my-file
 
 there are likely to be issues from trying to install an old version of the 
 package on a newer version of R, perhaps the lack of the requisite 
 development tools for compiling FORTRAN:
 
   
 http://cran.r-project.org/bin/windows/base/rw-FAQ.html#Can-I-install-packages-into-libraries-in-this-version_003f
 
 and other issues as well.
 
 Depending upon how far back you need to go in package versions, there may be 
 pre-compiled Windows binaries (.zip files) available in directories here:
 
   http://cran.r-project.org/bin/windows/contrib/
 
 I don't think so: see NEWS
 
 CHANGES IN R 3.0.0:
 
  SIGNIFICANT USER-VISIBLE CHANGES:
 
• Packages need to be (re-)installed under this version (3.0.0) of
  R.
 
 so only those under bin/windows/contrib/3.0 will work, and there is only one 
 for each package.
 


Ah, OK. Thanks for noting that Prof. Ripley.

So, Long will need to make some decisions here and it may be worth contacting 
the fGARCH package maintainer to get any relevant insights into potential 
gotchas installing an older version of the package on a recent version of R, 
even from source after installing the needed tools, or having to revert to an 
older version of R to support the installation of the older package.

Older Windows binaries of R releases are available from:

  http://cran.r-project.org/bin/windows/base/old/

and R 2.6.1 would be about the release that corresponds to the particular 
version of fGARCH being used above, which is late 2007.

Regards,

Marc

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Re: [R] installing package gstat

2013-10-10 Thread Thomas Adams

Simona,

You need to install the dependencies:

install.packages(gstat,dependencies=T)

Tom


On Thu, Oct 10, 2013 at 11:58 AM, Simona Augyte simona.aug...@uconn.eduwrote:

 Hello,
 # I am able to
 install.packages(gstat)
 #but when I try to upload I get an error message
 library(gstat)
 #Error in loadNamespace(j - i[[1L]], c(lib.loc, .libPaths()), versionCheck
 = vI[[j]]) :
 #  there is no package called intervals
 #In addition: Warning message:
 #package gstat was built under R version 3.0.2
 #Error: package or namespace load failed for gstat


 what do you recommend?

 --

 Simona Augyte, MS
 PhD student
 Ecology and Evolutionary Biology
 University of Connecticut
 cell 707-832-7007

 [[alternative HTML version deleted]]


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[[alternative HTML version deleted]]

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Re: [R] Installing package from website

2013-08-27 Thread Henrik Bengtsson

On Sun, Aug 25, 2013 at 10:55 AM, Christofer Bogaso
bogaso.christo...@gmail.com wrote:
 Hello again,

 I need to install Rmpi package from this
 http://www.stats.uwo.ca/faculty/yu/Rmpi/download/windows/MPICH2

 I was wondering if there is any direct way to install this in R. The
 trivial method would obviously be download and save the required zip file
 in the local disk and install it from there.

R.utils::installPackages(url)

/Henrik


 Any idea?

 Thanks and regards,

 [[alternative HTML version deleted]]

 __
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 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.

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R-help@r-project.org mailing list
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Re: [R] Installing package from website

2013-08-25 Thread Prof Brian Ripley


On 25/08/2013 18:55, Christofer Bogaso wrote:

Hello again,

I need to install Rmpi package from this
http://www.stats.uwo.ca/faculty/yu/Rmpi/download/windows/MPICH2

I was wondering if there is any direct way to install this in R. The


No, because it is not a proper R repository.  In particular, what makes 
you believe that those files are for your unstated version of R?  (And 
whatever that is, they cannot plausibly all be given their spread of dates.)



trivial method would obviously be download and save the required zip file
in the local disk and install it from there.


You could combine those within R, e.g. by using download.file() and 
install.packages(repos = NULL).



Any idea?



--
Brian D. Ripley,  rip...@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel:  +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax:  +44 1865 272595

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] Installing package(s) into ... (as ‘lib’ is unspecified)

2013-06-13 Thread Greg Snow

What evidence do you have that the package did not install?  The only
differences in the output that you show is that in the second case you get
extra output about downloading the package which does not apply in the
first case since you did not need to download the package.


On Thu, Jun 13, 2013 at 11:26 AM, Raffaello Vardavas r_varda...@hotmail.com
 wrote:

 Dear All,

 this may be a trivial problem. A collaborator has created an R package for
 internal use (not available on CRAN). This installs and works fine on my
 Mac but fails to install on windows.



 When I install the packagein windows by browing and pointing to the .zip
 file I get the following error:



 
 install.packages(C:/Users/rvardava/RiskPerceptionNetworks/Tools/nirm/nirm.tags/nirm_0.6.5.zip,
 repos = NULL)
 Installing package(s) into C:/Program Files/R/R-2.15.3/library
 (as lib is unspecified)
 
 install.packages(C:/Users/rvardava/RiskPerceptionNetworks/Tools/nirm/nirm.tags/nirm_0.6.4.zip,
 repos = NULL)
 Installing package(s) into C:/Program Files/R/R-2.15.3/library
 (as lib is unspecified)



 However if I install a package from CRAN (e.g. deSolve) the same warning
 appears initially - but it continues and installs the package with no
 problems:


  install.packages(deSolve)
 Installing package(s) into C:/Program Files/R/R-2.15.3/library
 (as lib is unspecified)
 trying URL '
 http://cran.stat.ucla.edu/bin/windows/contrib/2.15/deSolve_1.10-6.zip'
 Content type 'application/zip' length 2659517 bytes (2.5 Mb)
 opened URL
 downloaded 2.5 Mb

 package deSolve successfully unpacked and MD5 sums checked

 The downloaded binary packages are in
  C:\Users\rvardava\AppData\Local\Temp\RtmpO8Ul1g\downloaded_packages



 Please help.



 Thanks.

 Raff

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Re: [R] Installing package(s) into ... (as ‘lib’ is unspecified)

2013-06-13 Thread Duncan Murdoch


On 13/06/2013 1:26 PM, Raffaello Vardavas wrote:

Dear All,

this may be a trivial problem. A collaborator has created an R package for 
internal use (not available on CRAN). This installs and works fine on my Mac 
but fails to install on windows.

  


When I install the packagein windows by browing and pointing to the .zip file I 
get the following error:

  


 
install.packages(C:/Users/rvardava/RiskPerceptionNetworks/Tools/nirm/nirm.tags/nirm_0.6.5.zip,
 repos = NULL)
Installing package(s) into ‘C:/Program Files/R/R-2.15.3/library’
(as ‘lib’ is unspecified)
 
install.packages(C:/Users/rvardava/RiskPerceptionNetworks/Tools/nirm/nirm.tags/nirm_0.6.4.zip,
 repos = NULL)
Installing package(s) into ‘C:/Program Files/R/R-2.15.3/library’
(as ‘lib’ is unspecified)


Those are not errors, they are just notes to let you know where it was 
installed.
  


However if I install a package from CRAN (e.g. deSolve) the same warning 
appears initially - but it continues and installs the package with no problems:


 install.packages(deSolve)
Installing package(s) into ‘C:/Program Files/R/R-2.15.3/library’
(as ‘lib’ is unspecified)
trying URL 
'http://cran.stat.ucla.edu/bin/windows/contrib/2.15/deSolve_1.10-6.zip'
Content type 'application/zip' length 2659517 bytes (2.5 Mb)
opened URL
downloaded 2.5 Mb

package ‘deSolve’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
  C:\Users\rvardava\AppData\Local\Temp\RtmpO8Ul1g\downloaded_packages



You haven't shown us any error, but if the package doesn't work, it 
might be because it wasn't built properly.  A .zip file that works on a 
Mac is unlikely to also work on Windows:  Windows uses the .zip 
extension for *binary* installs.


Duncan Murdoch

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Re: [R] installing package 'rqpd' (Regression quantiles for panel data)

2013-06-05 Thread Manish K. Srivastava

Dear Henric,

Thank you so much. I was able to successfully install the rqpd package 
on my Windows machine (win 7) using the R.2.15.1 version.
I greatly appreciate your wonderful help.

Thank you.

Best regards,

Manish


On 6/4/2013 3:54 PM, Henric Winell wrote:
 Manish,

 Manish K. Srivastava skrev 2013-06-03 16:19:
 Hello R community members,

 I'm trying to install the 'rqpd' package which is developed by Roger
 Koenker and Stefan Bache. When I try to install the package using the
 command 'install.packages(rqpd,repos=http://R-Forge.R-project.org;)'
 I'm getting the following two messages:

 i) package rqpd is available as a source package but not as a binary
 ii) package rqpd is not available (for R version 3.0.1)

 Are you using Windows or OS X?  R-Forge doesn't currently provide 
 binaries for OS X.

 On checking the Log of /pkg on the r-forge.r.project.org website, I find
 that the package was last modified on May 8,2012 and was made compatible
 with R2.14.

 Quick fix to make it compile for R = 2.14


 So, in another attempt, I downloaded the older version of R (2.14) to
 see if the 'rqpd' package could be installed using the older version,
 but still I had no luck.

 That's because R-Forge no longer provide binaries for 2.14.x.



 Is there any way I could still use this package?

 Binaries seem to be available for 2.15.x.  Alternatively, you can 
 always build from source and that'll work for 3.0.x.


 HTH,
 Henric





 Thank you for your help.

 Best regards,

 Manish





-- 



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Re: [R] installing package 'rqpd' (Regression quantiles for panel data)

2013-06-04 Thread Henric Winell


Manish,

Manish K. Srivastava skrev 2013-06-03 16:19:

Hello R community members,

I'm trying to install the 'rqpd' package which is developed by Roger
Koenker and Stefan Bache. When I try to install the package using the
command 'install.packages(rqpd,repos=http://R-Forge.R-project.org;)'
I'm getting the following two messages:

i) package ‘rqpd’ is available as a source package but not as a binary
ii) package ‘rqpd’ is not available (for R version 3.0.1)


Are you using Windows or OS X?  R-Forge doesn't currently provide 
binaries for OS X.



On checking the Log of /pkg on the r-forge.r.project.org website, I find
that the package was last modified on May 8,2012 and was made compatible
with R2.14.

Quick fix to make it compile for R = 2.14


So, in another attempt, I downloaded the older version of R (2.14) to
see if the 'rqpd' package could be installed using the older version,
but still I had no luck.


That's because R-Forge no longer provide binaries for 2.14.x.




Is there any way I could still use this package?


Binaries seem to be available for 2.15.x.  Alternatively, you can always 
build from source and that'll work for 3.0.x.



HTH,
Henric






Thank you for your help.

Best regards,

Manish




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Re: [R] installing package

2013-04-25 Thread Pascal Oettli


Hi,

Do you have administrator rights?

Regards,
Pascal


On 04/25/2013 04:19 PM, Gitte Brinch Andersen wrote:

Hi

I am trying to install a package (bioconductor) but every time I try to install 
it I get this message:

source(http://bioconductor.org/biocLite.R;)
Warning in install.packages(BiocInstaller, repos = a[BioCsoft, URL]) :
   'lib = C:/Program Files/R/R-3.0.0/library' is not writable
Error in install.packages(BiocInstaller, repos = a[BioCsoft, URL]) :
   unable to install packages

 biocLite(methylumi)


I normally use mac computers, but I cannot get the right path for the folders I 
should use, so now I am trying with a windows platform instead. But now I 
cannot install one of the packages my pipeline needs.

Can anyone help?

I know it is probably a simple problem, but I have never used R before and 
don't know how to solve problems in it.

Best

Gitte Andersen

E-mail: gitt...@hum-gen.au.dk

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Re: [R] installing package

2013-04-25 Thread Martin Morgan


On 04/25/2013 12:19 AM, Gitte Brinch Andersen wrote:

Hi

I am trying to install a package (bioconductor) but every time I try to install 
it I get this message:

source(http://bioconductor.org/biocLite.R;)
Warning in install.packages(BiocInstaller, repos = a[BioCsoft, URL]) :
   'lib = C:/Program Files/R/R-3.0.0/library' is not writable
Error in install.packages(BiocInstaller, repos = a[BioCsoft, URL]) :
   unable to install packages


Hi Gitte -- this and your Mac path problems are really a question for the 
Bioconductor mailing list


  http://bioconductor.org/help/mailing-list/

I don't know the answer to your path problem, but the package author monitors 
that list and will be able to help.


I would have expected the attempt run the biocLite.R script to result in a 
dialog that asks 'Would you like to use a personal library instead?', to which 
you should answer 'yes'.


If for some reason you do not want to answer 'yes', then read the help page 
?.libPaths


Hope that helps, and please ask your questions about Bioconductor packages on 
the Bioconductor mailing list.


Martin



I normally use mac computers, but I cannot get the right path for the folders I 
should use, so now I am trying with a windows platform instead. But now I 
cannot install one of the packages my pipeline needs.

Can anyone help?

I know it is probably a simple problem, but I have never used R before and 
don't know how to solve problems in it.

Best

Gitte Andersen

E-mail: gitt...@hum-gen.au.dk

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Location: Arnold Building M1 B861
Phone: (206) 667-2793

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Re: [R] installing package tkrplot

2012-03-05 Thread Uwe Ligges




On 05.03.2012 17:26, henk harmsen wrote:

package tkrplot worked, but has broken while installing from R 2.11 to
2.14.2.
it does not want to be installed anymore on a linux debian squeeze 64
system.

have tried:
- installing from source R: CMD INSTALL tkrplot_0.0-23.tar.gz
- via synaptic: package r-cran-tkrplot
- via terminal: sudo apt-get install r-cran-tkrplot
- in R: install.packages('tkrplot',dependencies=TRUE)

in all cases there is either a long list of errors, or 'package ‘tkrplot’
does not have a NAMESPACE and should be re-installed'.

does anybody know how to solve this?


Probably not without knowing the error message. We can only guess that 
your tcl/tk installation is broken or misses header files.


Uwe Ligges



henk

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