Re: [R-SIG-Mac] more rgl problems

[Peter West]

Ken,

I only used RStudio because it is easier to remove packages. I should have made 
that clear.

The same thing happens with R.app; that is, library(rgl) hangs indefinitely.

Peter
—
p...@ehealth.id.au
“For what does it profit a man if he gains the whole world and loses or 
forfeits himself?”

> On 18 Feb 2021, at 1:41 pm, Ken Beath  wrote:
> 
> RStudio have a page for reporting bugs at 
> https://github.com/rstudio/rstudio/issues/ 
>  You may be the first M! bug.
> 
> They haven’t progressed my fairly serious bug report about Windows (if you 
> plot a graph and the screen hasn’t updated when you start parallel processing 
> then R crashes) from 6 weeks ago, so I wouldn’t be anticipating much progress 
> soon.
> 
> Ken
> 
>> On 18 Feb 2021, at 2:13 pm, Peter West > > wrote:
>> 
>> And speaking of M1 Silicon:
>> 
>> My XQuartz version is 2.7.11.
>> 
>> Started R 4.0.4.
>> Stopped R 4.0.4
>> Started RStudio
>> 
>>> install.packages("rgl")
>> trying URL 'https://cran.rstudio.com/bin/macosx/contrib/4.0/rgl_0.105.13.tgz 
>> '
>> Content type 'application/x-gzip' length 6446159 bytes (6.1 MB)
>> ==
>> downloaded 6.1 MB
>> 
>> 
>> The downloaded binary packages are in
>>  
>> /var/folders/jf/mkyz74311796dl4mxx_7tcx8gn/T//RtmpflD1wL/downloaded_packages
>>> library(rgl)
>> 
>> RStudio hangs indefinitely.
>> 
>> My RStudio is at 1.4.1103.
>> 
>> Peter
>> 
>> —
>> p...@ehealth.id.au 
>> “For what does it profit a man if he gains the whole world and loses or 
>> forfeits himself?”
>> 
>>> On 18 Feb 2021, at 10:36 am, Richard M. Heiberger  wrote:
>>> 
>>> This is repeatable when the lines are all pasted in at once.
>>> The example works if I allow some time delay between lines.
>>> 
>>> This is might be a relative of the one from a few months ago.
>>> But this message is about invalid permissions.
>>> =
>>> 
>>> R version 4.0.4 RC (2021-02-12 r79998) -- "Lost Library Book"
>>> Copyright (C) 2021 The R Foundation for Statistical Computing
>>> Platform: x86_64-apple-darwin17.0 (64-bit)
>>> 
>>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>>> You are welcome to redistribute it under certain conditions.
>>> Type 'license()' or 'licence()' for distribution details.
>>> 
>>> Natural language support but running in an English locale
>>> 
>>> R is a collaborative project with many contributors.
>>> Type 'contributors()' for more information and
>>> 'citation()' on how to cite R or R packages in publications.
>>> 
>>> Type 'demo()' for some demos, 'help()' for on-line help, or
>>> 'help.start()' for an HTML browser interface to help.
>>> Type 'q()' to quit R.
>>> 
 setwd('/Users/rmh/Rwd/')
 library(rgl)
 x <- matrix(1:3, 1,3)
 plot(1:10, col=7)
 open3d()
>>> error: xp_attach_gl_context returned: 2
>>> 
>>> *** caught segfault ***
>>> address 0x18, cause 'invalid permissions'
>>> 
>>> Traceback:
>>> 1: rgl.open(useNULL)
>>> 2: open3d()
>>> 
>>> Possible actions:
>>> 1: abort (with core dump, if enabled)
>>> 2: normal R exit
>>> 3: exit R without saving workspace
>>> 4: exit R saving workspace
>>> Selection: 
>>> 
>>> 
>>> 
>>> MacBookAir with the M1 chip using the regular intel version of R from CRAN.
>>> Big Sur 11.2.1.
>>> The plot(1:10), col=7) ## went by default to the quartz() device.
>>> 
>>> 
>>> I repeated this about 5 times in ESS, and then once in Terminal.
>>> 
>>> Let me know if you need more information.
>>> 
>>> 
>>> ___
>>> R-SIG-Mac mailing list
>>> R-SIG-Mac@r-project.org
>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>> 
>> 
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>> 
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>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> 


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Re: [R-SIG-Mac] more rgl problems

[Ken Beath]

RStudio have a page for reporting bugs at 
https://github.com/rstudio/rstudio/issues/ 
 You may be the first M! bug.

They haven’t progressed my fairly serious bug report about Windows (if you plot 
a graph and the screen hasn’t updated when you start parallel processing then R 
crashes) from 6 weeks ago, so I wouldn’t be anticipating much progress soon.

Ken

> On 18 Feb 2021, at 2:13 pm, Peter West  wrote:
> 
> And speaking of M1 Silicon:
> 
> My XQuartz version is 2.7.11.
> 
> Started R 4.0.4.
> Stopped R 4.0.4
> Started RStudio
> 
>> install.packages("rgl")
> trying URL 'https://cran.rstudio.com/bin/macosx/contrib/4.0/rgl_0.105.13.tgz'
> Content type 'application/x-gzip' length 6446159 bytes (6.1 MB)
> ==
> downloaded 6.1 MB
> 
> 
> The downloaded binary packages are in
>   
> /var/folders/jf/mkyz74311796dl4mxx_7tcx8gn/T//RtmpflD1wL/downloaded_packages
>> library(rgl)
> 
> RStudio hangs indefinitely.
> 
> My RStudio is at 1.4.1103.
> 
> Peter
> 
> —
> p...@ehealth.id.au
> “For what does it profit a man if he gains the whole world and loses or 
> forfeits himself?”
> 
>> On 18 Feb 2021, at 10:36 am, Richard M. Heiberger  wrote:
>> 
>> This is repeatable when the lines are all pasted in at once.
>> The example works if I allow some time delay between lines.
>> 
>> This is might be a relative of the one from a few months ago.
>> But this message is about invalid permissions.
>> =
>> 
>> R version 4.0.4 RC (2021-02-12 r79998) -- "Lost Library Book"
>> Copyright (C) 2021 The R Foundation for Statistical Computing
>> Platform: x86_64-apple-darwin17.0 (64-bit)
>> 
>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>> You are welcome to redistribute it under certain conditions.
>> Type 'license()' or 'licence()' for distribution details.
>> 
>> Natural language support but running in an English locale
>> 
>> R is a collaborative project with many contributors.
>> Type 'contributors()' for more information and
>> 'citation()' on how to cite R or R packages in publications.
>> 
>> Type 'demo()' for some demos, 'help()' for on-line help, or
>> 'help.start()' for an HTML browser interface to help.
>> Type 'q()' to quit R.
>> 
>>> setwd('/Users/rmh/Rwd/')
>>> library(rgl)
>>> x <- matrix(1:3, 1,3)
>>> plot(1:10, col=7)
>>> open3d()
>> error: xp_attach_gl_context returned: 2
>> 
>> *** caught segfault ***
>> address 0x18, cause 'invalid permissions'
>> 
>> Traceback:
>> 1: rgl.open(useNULL)
>> 2: open3d()
>> 
>> Possible actions:
>> 1: abort (with core dump, if enabled)
>> 2: normal R exit
>> 3: exit R without saving workspace
>> 4: exit R saving workspace
>> Selection: 
>> 
>> 
>> 
>> MacBookAir with the M1 chip using the regular intel version of R from CRAN.
>> Big Sur 11.2.1.
>> The plot(1:10), col=7) ## went by default to the quartz() device.
>> 
>> 
>> I repeated this about 5 times in ESS, and then once in Terminal.
>> 
>> Let me know if you need more information.
>> 
>> 
>> ___
>> R-SIG-Mac mailing list
>> R-SIG-Mac@r-project.org
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> 
> 
>   [[alternative HTML version deleted]]
> 
> ___
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> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac


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Re: [R-SIG-Mac] more rgl problems

[Peter West]

And speaking of M1 Silicon:

My XQuartz version is 2.7.11.

Started R 4.0.4.
Stopped R 4.0.4
Started RStudio

> install.packages("rgl")
trying URL 'https://cran.rstudio.com/bin/macosx/contrib/4.0/rgl_0.105.13.tgz'
Content type 'application/x-gzip' length 6446159 bytes (6.1 MB)
==
downloaded 6.1 MB


The downloaded binary packages are in

/var/folders/jf/mkyz74311796dl4mxx_7tcx8gn/T//RtmpflD1wL/downloaded_packages
> library(rgl)

RStudio hangs indefinitely.

My RStudio is at 1.4.1103.

Peter

—
p...@ehealth.id.au
“For what does it profit a man if he gains the whole world and loses or 
forfeits himself?”

> On 18 Feb 2021, at 10:36 am, Richard M. Heiberger  wrote:
> 
> This is repeatable when the lines are all pasted in at once.
> The example works if I allow some time delay between lines.
> 
> This is might be a relative of the one from a few months ago.
> But this message is about invalid permissions.
> =
> 
> R version 4.0.4 RC (2021-02-12 r79998) -- "Lost Library Book"
> Copyright (C) 2021 The R Foundation for Statistical Computing
> Platform: x86_64-apple-darwin17.0 (64-bit)
> 
> R is free software and comes with ABSOLUTELY NO WARRANTY.
> You are welcome to redistribute it under certain conditions.
> Type 'license()' or 'licence()' for distribution details.
> 
>  Natural language support but running in an English locale
> 
> R is a collaborative project with many contributors.
> Type 'contributors()' for more information and
> 'citation()' on how to cite R or R packages in publications.
> 
> Type 'demo()' for some demos, 'help()' for on-line help, or
> 'help.start()' for an HTML browser interface to help.
> Type 'q()' to quit R.
> 
>> setwd('/Users/rmh/Rwd/')
>> library(rgl)
>> x <- matrix(1:3, 1,3)
>> plot(1:10, col=7)
>> open3d()
> error: xp_attach_gl_context returned: 2
> 
> *** caught segfault ***
> address 0x18, cause 'invalid permissions'
> 
> Traceback:
> 1: rgl.open(useNULL)
> 2: open3d()
> 
> Possible actions:
> 1: abort (with core dump, if enabled)
> 2: normal R exit
> 3: exit R without saving workspace
> 4: exit R saving workspace
> Selection: 
> 
> 
> 
> MacBookAir with the M1 chip using the regular intel version of R from CRAN.
> Big Sur 11.2.1.
> The plot(1:10), col=7) ## went by default to the quartz() device.
> 
> 
> I repeated this about 5 times in ESS, and then once in Terminal.
> 
> Let me know if you need more information.
> 
> 
> ___
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac


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[R-SIG-Mac] more rgl problems

[Richard M. Heiberger]

This is repeatable when the lines are all pasted in at once.
The example works if I allow some time delay between lines.

This is might be a relative of the one from a few months ago.
But this message is about invalid permissions.
=

R version 4.0.4 RC (2021-02-12 r79998) -- "Lost Library Book"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> setwd('/Users/rmh/Rwd/')
> library(rgl)
> x <- matrix(1:3, 1,3)
> plot(1:10, col=7)
> open3d()
error: xp_attach_gl_context returned: 2

 *** caught segfault ***
address 0x18, cause 'invalid permissions'

Traceback:
 1: rgl.open(useNULL)
 2: open3d()

Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
Selection: 



MacBookAir with the M1 chip using the regular intel version of R from CRAN.
Big Sur 11.2.1.
The plot(1:10), col=7) ## went by default to the quartz() device.


I repeated this about 5 times in ESS, and then once in Terminal.

Let me know if you need more information.


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