Re: [R-SIG-Mac] Installing the "jpeg" package?
On 2019-11-02 01:51, David Winsemius wrote: On 11/1/19 8:03 PM, Spencer Graves wrote: Hello, All: How can I get the dev files for libjpeg installed under macOS 10.15.1 Catalina? You probably have the right tools, but it wouldn't hurt to check: https://cran.r-project.org/bin/macosx/tools/ And have you installed the libjpeg library from the /libs/ directory? http://mac.r-project.org/libs/ The directions for installation from a Terminal session are at the bottom of the page. I have not updated to Catalina, but the error message suggested that jpeglib.h could not be found. Thanks or the reply. I tried to (re)install both the tools and libjpeg with apparent success. However, when I tried "install.packages()" again, I got the same error message as before. Other thoughts, e.g., diagnostic tests? Thanks again. Spencer Graves Hope this helps; David Simon Urbanek, the maintainer for the "jpeg" package, said I need them to install the "jpeg" package from sources. I'm unable to get that package to install either as a binary or from sources; see below. Suggestions? Thanks, Spencer Graves > update.packages() jpeg : Version 0.1-8 installed in /Library/Frameworks/R.framework/Versions/3.6/Resources/library Version 0.1-8.1 available at https://cran.rstudio.com Update? (Yes/no/cancel) y There is a binary version available but the source version is later: binary source needs_compilation jpeg 0.1-8 0.1-8.1 TRUE Do you want to install from sources the package which needs compilation? (Yes/no/cancel) y installing the source package ‘jpeg’ trying URL 'https://cran.rstudio.com/src/contrib/jpeg_0.1-8.1.tar.gz' Content type 'application/x-gzip' length 18116 bytes (17 KB) == downloaded 17 KB * installing *source* package ‘jpeg’ ... ** package ‘jpeg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c read.c -o read.o In file included from read.c:1: ./rjcommon.h:11:10: fatal error: 'jpeglib.h' file not found #include ^~~ 1 error generated. make: *** [read.o] Error 1 ERROR: compilation failed for package ‘jpeg’ * removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/jpeg’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/jpeg’ The downloaded source packages are in ‘/private/var/folders/mh/mrm_14nx19g13lsnj9zmvwjrgn/T/Rtmp8GMSE7/downloaded_packages’ Warning message: In install.packages(update[instlib == l, "Package"], l, repos = repos, : installation of package ‘jpeg’ had non-zero exit status > update.packages() jpeg : Version 0.1-8 installed in /Library/Frameworks/R.framework/Versions/3.6/Resources/library Version 0.1-8.1 available at https://cran.rstudio.com Update? (Yes/no/cancel) y There is a binary version available but the source version is later: binary source needs_compilation jpeg 0.1-8 0.1-8.1 TRUE Do you want to install from sources the package which needs compilation? (Yes/no/cancel) n trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/jpeg_0.1-8.tgz' Content type 'application/x-gzip' length 389601 bytes (380 KB) == downloaded 380 KB The downloaded binary packages are in /var/folders/mh/mrm_14nx19g13lsnj9zmvwjrgn/T//Rtmp8GMSE7/downloaded_packages > sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Catalina 10.15.1 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets [6] methods base other attached packages: [1] bssm_0.1.8 loaded via a namespace (and not attached): [1] Rcpp_1.0.2 lattice_0.20-38 assertthat_0.2.1 [4] dplyr_0.8.3 crayon_1.3.4 R6_2.4.0 [7] grid_3.6.1 gtable_0.3.0 magrittr_1.5 [10] coda_0.19-3 scales_1.0.0 ggplot2_3.2.1 [13] pillar_1.4.2 rlang_0.4.1 lazyeval_0.2.2 [16] rstudioapi_0.10 diagis_0.1.3-1 tools_3.6.1 [19] glue_1.3.1 purrr_0.3.3 munsell_0.5.0 [22] compiler_3.6.1 pkgconfig_2.0.3 colorspace_1.4-1 [25] tidyselect_0.2.5 gridExtra_2.3 tibble_2.1.3 ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac
Re: [R-SIG-Mac] Installing the "jpeg" package?
On 11/1/19 8:03 PM, Spencer Graves wrote: Hello, All: How can I get the dev files for libjpeg installed under macOS 10.15.1 Catalina? You probably have the right tools, but it wouldn't hurt to check: https://cran.r-project.org/bin/macosx/tools/ And have you installed the libjpeg library from the /libs/ directory? http://mac.r-project.org/libs/ The directions for installation from a Terminal session are at the bottom of the page. I have not updated to Catalina, but the error message suggested that jpeglib.h could not be found. Hope this helps; David Simon Urbanek, the maintainer for the "jpeg" package, said I need them to install the "jpeg" package from sources. I'm unable to get that package to install either as a binary or from sources; see below. Suggestions? Thanks, Spencer Graves > update.packages() jpeg : Version 0.1-8 installed in /Library/Frameworks/R.framework/Versions/3.6/Resources/library Version 0.1-8.1 available at https://cran.rstudio.com Update? (Yes/no/cancel) y There is a binary version available but the source version is later: binary source needs_compilation jpeg 0.1-8 0.1-8.1 TRUE Do you want to install from sources the package which needs compilation? (Yes/no/cancel) y installing the source package ‘jpeg’ trying URL 'https://cran.rstudio.com/src/contrib/jpeg_0.1-8.1.tar.gz' Content type 'application/x-gzip' length 18116 bytes (17 KB) == downloaded 17 KB * installing *source* package ‘jpeg’ ... ** package ‘jpeg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c read.c -o read.o In file included from read.c:1: ./rjcommon.h:11:10: fatal error: 'jpeglib.h' file not found #include ^~~ 1 error generated. make: *** [read.o] Error 1 ERROR: compilation failed for package ‘jpeg’ * removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/jpeg’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/jpeg’ The downloaded source packages are in ‘/private/var/folders/mh/mrm_14nx19g13lsnj9zmvwjrgn/T/Rtmp8GMSE7/downloaded_packages’ Warning message: In install.packages(update[instlib == l, "Package"], l, repos = repos, : installation of package ‘jpeg’ had non-zero exit status > update.packages() jpeg : Version 0.1-8 installed in /Library/Frameworks/R.framework/Versions/3.6/Resources/library Version 0.1-8.1 available at https://cran.rstudio.com Update? (Yes/no/cancel) y There is a binary version available but the source version is later: binary source needs_compilation jpeg 0.1-8 0.1-8.1 TRUE Do you want to install from sources the package which needs compilation? (Yes/no/cancel) n trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/jpeg_0.1-8.tgz' Content type 'application/x-gzip' length 389601 bytes (380 KB) == downloaded 380 KB The downloaded binary packages are in /var/folders/mh/mrm_14nx19g13lsnj9zmvwjrgn/T//Rtmp8GMSE7/downloaded_packages > sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Catalina 10.15.1 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets [6] methods base other attached packages: [1] bssm_0.1.8 loaded via a namespace (and not attached): [1] Rcpp_1.0.2 lattice_0.20-38 assertthat_0.2.1 [4] dplyr_0.8.3 crayon_1.3.4 R6_2.4.0 [7] grid_3.6.1 gtable_0.3.0 magrittr_1.5 [10] coda_0.19-3 scales_1.0.0 ggplot2_3.2.1 [13] pillar_1.4.2 rlang_0.4.1 lazyeval_0.2.2 [16] rstudioapi_0.10 diagis_0.1.3-1 tools_3.6.1 [19] glue_1.3.1 purrr_0.3.3 munsell_0.5.0 [22] compiler_3.6.1 pkgconfig_2.0.3 colorspace_1.4-1 [25] tidyselect_0.2.5 gridExtra_2.3 tibble_2.1.3 ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
[R-SIG-Mac] Installing the "jpeg" package?
Hello, All: How can I get the dev files for libjpeg installed under macOS 10.15.1 Catalina? Simon Urbanek, the maintainer for the "jpeg" package, said I need them to install the "jpeg" package from sources. I'm unable to get that package to install either as a binary or from sources; see below. Suggestions? Thanks, Spencer Graves > update.packages() jpeg : Version 0.1-8 installed in /Library/Frameworks/R.framework/Versions/3.6/Resources/library Version 0.1-8.1 available at https://cran.rstudio.com Update? (Yes/no/cancel) y There is a binary version available but the source version is later: binary source needs_compilation jpeg 0.1-8 0.1-8.1 TRUE Do you want to install from sources the package which needs compilation? (Yes/no/cancel) y installing the source package ‘jpeg’ trying URL 'https://cran.rstudio.com/src/contrib/jpeg_0.1-8.1.tar.gz' Content type 'application/x-gzip' length 18116 bytes (17 KB) == downloaded 17 KB * installing *source* package ‘jpeg’ ... ** package ‘jpeg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c read.c -o read.o In file included from read.c:1: ./rjcommon.h:11:10: fatal error: 'jpeglib.h' file not found #include ^~~ 1 error generated. make: *** [read.o] Error 1 ERROR: compilation failed for package ‘jpeg’ * removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/jpeg’ * restoring previous ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/jpeg’ The downloaded source packages are in ‘/private/var/folders/mh/mrm_14nx19g13lsnj9zmvwjrgn/T/Rtmp8GMSE7/downloaded_packages’ Warning message: In install.packages(update[instlib == l, "Package"], l, repos = repos, : installation of package ‘jpeg’ had non-zero exit status > update.packages() jpeg : Version 0.1-8 installed in /Library/Frameworks/R.framework/Versions/3.6/Resources/library Version 0.1-8.1 available at https://cran.rstudio.com Update? (Yes/no/cancel) y There is a binary version available but the source version is later: binary source needs_compilation jpeg 0.1-8 0.1-8.1 TRUE Do you want to install from sources the package which needs compilation? (Yes/no/cancel) n trying URL 'https://cran.rstudio.com/bin/macosx/el-capitan/contrib/3.6/jpeg_0.1-8.tgz' Content type 'application/x-gzip' length 389601 bytes (380 KB) == downloaded 380 KB The downloaded binary packages are in /var/folders/mh/mrm_14nx19g13lsnj9zmvwjrgn/T//Rtmp8GMSE7/downloaded_packages > sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: macOS Catalina 10.15.1 Matrix products: default BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets [6] methods base other attached packages: [1] bssm_0.1.8 loaded via a namespace (and not attached): [1] Rcpp_1.0.2 lattice_0.20-38 assertthat_0.2.1 [4] dplyr_0.8.3 crayon_1.3.4 R6_2.4.0 [7] grid_3.6.1 gtable_0.3.0 magrittr_1.5 [10] coda_0.19-3 scales_1.0.0 ggplot2_3.2.1 [13] pillar_1.4.2 rlang_0.4.1 lazyeval_0.2.2 [16] rstudioapi_0.10 diagis_0.1.3-1 tools_3.6.1 [19] glue_1.3.1 purrr_0.3.3 munsell_0.5.0 [22] compiler_3.6.1 pkgconfig_2.0.3 colorspace_1.4-1 [25] tidyselect_0.2.5 gridExtra_2.3 tibble_2.1.3 ___ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac