On Apr 11, 2014, at 12:54 AM, Jeroen Ooms jeroen.o...@stat.ucla.edu wrote:
Running update.packages on R 3.1 for Mavericks complains that some
CRAN packages do not have binary builds available. For example lme4 is
missing from http://cran.r-project.org/bin/macosx/mavericks/contrib/3.1/.
Is there any reason for this,
Yes, only packages that pass make check are present.
or do I just need some patience? I installed lme4 from source and it seems to
build without problems.
It fails make check with
* checking for unstated dependencies in tests ... OK
* checking tests ... ERROR
Running the tests in ‘tests/priorWeights.R’ failed.
Last 13 lines of output:
sleepLmer - lmer(Reaction ~ Days + (Days|Subject),
+ sleepstudy, weights = w,
+ REML = FALSE)
sleepComp - compFunc(sleepLme, sleepLmer)
stopifnot(do.call(all.equal, sleepComp))
## look at relative differences:
sleepComp$tolerance - 0
do.call(all.equal, sleepComp)
[1] Mean relative difference: 0.000818191
library(mlmRev)
Error in library(mlmRev) : there is no package called 'mlmRev'
Execution halted
* elapsed time (check, wall clock): 7:57
However, mlmRev itself depends on lme4, so it's not available. It seems like a
bug in the tests which should not fail if mlmRev is not available since it's
only suggested, not required.
Cheers,
Simon
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