Dear all
I have 100s of trees in nexus or phylip format estimated from different
alignments using sequences taken from an identical set of taxa, the tree
has about a 10 clades and 50 taxa. All trees are stored in a single
directory. I am interested in tallying the relationship (what clade is
sister to what) for each loci, and the support value for 3 clades in
particular i.e. A, B and C.
I am pretty confident that clade membership within clades A, B and C will
be maintained. But some taxa within in each could occasionally have missing
data for a locus (5% or so).
I hope to get out a table with the following fields.
Loci# (taken from file name), Relationship Supported, Support Value for the
relationship
Any ideas?
Hopefully
Chris Buddenhagen
FSU
cbuddenha...@gmail.com
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