Dears I am comparing rooted trees with the same tip labels and the tips with ancestral differences and number of differences vary between each set of trees. I am using the Kendall-Colijn test. What test statistics is appropriate to perform on this type of dataset? My trees are rooted to different reference genomes (draft and close genomes) and my hypothesis is that they is no difference in topology whether using a draft or reference genome. Thanks Valentine Usongo [[alternative HTML version deleted]]
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