Re: [Rdkit-discuss] Seg fault importing rdkit.Chem on Mac 10.13.2 and Python 3.6.3

[JW Feng via Rdkit-discuss]

Thanks, my colleague Katrina Lexa found that python 3.6.1 worked.  Conda
version is 4.4.6

conda create --name test-rdkit --channel https://conda.anaconda.org/rdkit rdkit
python=3.6.1

Best,

JW

___
JW Feng, Ph.D.
Denali Therapeutics Inc.
151 Oyster Point Blvd, 2nd Floor, South San Francisco, CA 94080 | (650)
270-0628

On Wed, Jan 3, 2018 at 11:55 PM, Greg Landrum 
wrote:

> I'm going to guess that it's this problem: https://github.com/rd
> kit/rdkit/issues/1617
> and that the solution is to downgrade conda to v4.3.25 (conda install
> conda=4.3.25).
>
> This problem has proven much more frustrating to fix for the mac (linux
> and windows are now fine) than expected, but Brian and I continue to try.
>
> -greg
>
>
> On Tue, Jan 2, 2018 at 9:46 PM, JW Feng via Rdkit-discuss <
> rdkit-discuss@lists.sourceforge.net> wrote:
>
>> Hi,
>>
>> I want to check to see if others encountered this problem before filing a
>> new issue on github.  I got a seg fault trying to import rdkit.Chem.  I am
>> using Python 3.6.3 on Mac OS 10.13.2 (High Sierra).  Below is a screenshot
>> showing how I reproduced the seg fault error.  RDKit was installed using
>> this conda command "conda install --channel
>> https://conda.anaconda.org/rdkit rdkit"
>>
>>
>> [image: Inline image 1]
>>
>> Python 2.7 works just fine.
>>
>> Thanks,
>>
>> JW
>>
>>
>> ___
>> JW Feng, Ph.D.
>> Denali Therapeutics Inc.
>> 151 Oyster Point Blvd, 2nd Floor, South San Francisco, CA 94080
>> 
>>  |
>> (650) 270-0628
>>
>> 
>> --
>> Check out the vibrant tech community on one of the world's most
>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>> ___
>> Rdkit-discuss mailing list
>> Rdkit-discuss@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
>>
>>
>
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Re: [Rdkit-discuss] Seg fault importing rdkit.Chem on Mac 10.13.2 and Python 3.6.3

[Greg Landrum]

I'm going to guess that it's this problem: https://github.com/
rdkit/rdkit/issues/1617
and that the solution is to downgrade conda to v4.3.25 (conda install
conda=4.3.25).

This problem has proven much more frustrating to fix for the mac (linux and
windows are now fine) than expected, but Brian and I continue to try.

-greg


On Tue, Jan 2, 2018 at 9:46 PM, JW Feng via Rdkit-discuss <
rdkit-discuss@lists.sourceforge.net> wrote:

> Hi,
>
> I want to check to see if others encountered this problem before filing a
> new issue on github.  I got a seg fault trying to import rdkit.Chem.  I am
> using Python 3.6.3 on Mac OS 10.13.2 (High Sierra).  Below is a screenshot
> showing how I reproduced the seg fault error.  RDKit was installed using
> this conda command "conda install --channel  https://conda.anaconda.org/rd
> kit rdkit"
>
>
> [image: Inline image 1]
>
> Python 2.7 works just fine.
>
> Thanks,
>
> JW
>
>
> ___
> JW Feng, Ph.D.
> Denali Therapeutics Inc.
> 151 Oyster Point Blvd, 2nd Floor, South San Francisco, CA 94080 | (650)
> 270-0628
>
> 
> --
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> ___
> Rdkit-discuss mailing list
> Rdkit-discuss@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/rdkit-discuss
>
>
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[Rdkit-discuss] Seg fault importing rdkit.Chem on Mac 10.13.2 and Python 3.6.3

[JW Feng via Rdkit-discuss]

Hi,

I want to check to see if others encountered this problem before filing a
new issue on github.  I got a seg fault trying to import rdkit.Chem.  I am
using Python 3.6.3 on Mac OS 10.13.2 (High Sierra).  Below is a screenshot
showing how I reproduced the seg fault error.  RDKit was installed using
this conda command "conda install --channel
https://conda.anaconda.org/rdkit rdkit"


[image: Inline image 1]

Python 2.7 works just fine.

Thanks,

JW


___
JW Feng, Ph.D.
Denali Therapeutics Inc.
151 Oyster Point Blvd, 2nd Floor, South San Francisco, CA 94080 | (650)
270-0628
--
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