[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-09-03 Thread witgo
Github user witgo commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-54268060
  
I merge this PR into #1031 and close this.


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-09-03 Thread witgo
Github user witgo closed the pull request at:

https://github.com/apache/spark/pull/1022


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-08-13 Thread SparkQA
Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-52016360
  
QA tests have started for PR 1022. This patch merges cleanly. brView 
progress: 
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/18431/consoleFull


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-08-13 Thread SparkQA
Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-52016370
  
QA results for PR 1022:br- This patch FAILED unit tests.br- This patch 
merges cleanlybr- This patch adds no public classesbrbrFor more 
information see test 
ouptut:brhttps://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/18431/consoleFull


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-08-13 Thread mateiz
Github user mateiz commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-52092215
  
test this please


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-08-13 Thread SparkQA
Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-52092872
  
QA tests have started for PR 1022. This patch merges cleanly. brView 
progress: 
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/18454/consoleFull


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-08-13 Thread SparkQA
Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-52099805
  
QA results for PR 1022:br- This patch PASSES unit tests.br- This patch 
merges cleanlybr- This patch adds no public classesbrbrFor more 
information see test 
ouptut:brhttps://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/18454/consoleFull


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-08-13 Thread mateiz
Github user mateiz commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-52107667
  
BTW one issue may be that LD_LIBRARY_PATH might not work on Windows. How 
does YARN pass library paths there?


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-08-13 Thread witgo
Github user witgo commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-52138943
  
YARN does not seem to do any processing.  We can use the solution in #1031


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-07-16 Thread witgo
Github user witgo closed the pull request at:

https://github.com/apache/spark/pull/1022


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-07-16 Thread witgo
GitHub user witgo reopened a pull request:

https://github.com/apache/spark/pull/1022

SPARK-1719: spark.*.extraLibraryPath isn't applied on yarn

Fix: spark.executor.extraLibraryPath isn't applied on yarn

You can merge this pull request into a Git repository by running:

$ git pull https://github.com/witgo/spark SPARK-1719

Alternatively you can review and apply these changes as the patch at:

https://github.com/apache/spark/pull/1022.patch

To close this pull request, make a commit to your master/trunk branch
with (at least) the following in the commit message:

This closes #1022


commit b23e9c3e4085c0a7faf2c51fd350ad1233aa7a40
Author: Prashant Sharma prashan...@imaginea.com
Date:   2014-07-11T18:52:35Z

[SPARK-2437] Rename MAVEN_PROFILES to SBT_MAVEN_PROFILES and add 
SBT_MAVEN_PROPERTIES

NOTE: It is not possible to use both env variable  `SBT_MAVEN_PROFILES`  
and `-P` flag at same time. `-P` if specified takes precedence.

Author: Prashant Sharma prashan...@imaginea.com

Closes #1374 from ScrapCodes/SPARK-2437/rename-MAVEN_PROFILES and squashes 
the following commits:

8694bde [Prashant Sharma] [SPARK-2437] Rename MAVEN_PROFILES to 
SBT_MAVEN_PROFILES and add SBT_MAVEN_PROPERTIES

commit cbff18774b0a2f346901ddf2f566be50561a57c7
Author: Kousuke Saruta saru...@oss.nttdata.co.jp
Date:   2014-07-12T04:10:26Z

[SPARK-2457] Inconsistent description in README about build option

Now, we should use -Pyarn instead of SPARK_YARN when building but README 
says as follows.

For Apache Hadoop 2.2.X, 2.1.X, 2.0.X, 0.23.x, Cloudera CDH MRv2, and 
other Hadoop versions
with YARN, also set `SPARK_YARN=true`:

  # Apache Hadoop 2.0.5-alpha
  $ sbt/sbt -Dhadoop.version=2.0.5-alpha -Pyarn assembly

  # Cloudera CDH 4.2.0 with MapReduce v2
  $ sbt/sbt -Dhadoop.version=2.0.0-cdh4.2.0 -Pyarn assembly

  # Apache Hadoop 2.2.X and newer
  $ sbt/sbt -Dhadoop.version=2.2.0 -Pyarn assembly

Author: Kousuke Saruta saru...@oss.nttdata.co.jp

Closes #1382 from sarutak/SPARK-2457 and squashes the following commits:

e7b2d64 [Kousuke Saruta] Replaced SPARK_YARN=true with -Pyarn in README

commit 55960869358d4f8aa5b2e3b17d87b0b02ba9acdd
Author: DB Tsai dbt...@dbtsai.com
Date:   2014-07-12T06:04:43Z

[SPARK-1969][MLlib] Online summarizer APIs for mean, variance, min, and max

It basically moved the private ColumnStatisticsAggregator class from 
RowMatrix to public available DeveloperApi with documentation and unitests.

Changes:
1) Moved the private implementation from 
org.apache.spark.mllib.linalg.ColumnStatisticsAggregator to 
org.apache.spark.mllib.stat.MultivariateOnlineSummarizer
2) When creating OnlineSummarizer object, the number of columns is not 
needed in the constructor. It's determined when users add the first sample.
3) Added the APIs documentation for MultivariateOnlineSummarizer.
4) Added the unittests for MultivariateOnlineSummarizer.

Author: DB Tsai dbt...@dbtsai.com

Closes #955 from dbtsai/dbtsai-summarizer and squashes the following 
commits:

b13ac90 [DB Tsai] dbtsai-summarizer

commit d38887b8a0d00a11d7cf9393e7cb0918c3ec7a22
Author: Li Pu l...@twitter.com
Date:   2014-07-12T06:26:47Z

use specialized axpy in RowMatrix for SVD

After running some more tests on large matrix, found that the BV axpy 
(breeze/linalg/Vector.scala, axpy) is slower than the BSV axpy 
(breeze/linalg/operators/SparseVectorOps.scala, sv_dv_axpy), 8s v.s. 2s for 
each multiplication. The BV axpy operates on an iterator while BSV axpy 
directly operates on the underlying array. I think the overhead comes from 
creating the iterator (with a zip) and advancing the pointers.

Author: Li Pu l...@twitter.com
Author: Xiangrui Meng m...@databricks.com
Author: Li Pu li...@outlook.com

Closes #1378 from vrilleup/master and squashes the following commits:

6fb01a3 [Li Pu] use specialized axpy in RowMatrix
5255f2a [Li Pu] Merge remote-tracking branch 'upstream/master'
7312ec1 [Li Pu] very minor comment fix
4c618e9 [Li Pu] Merge pull request #1 from mengxr/vrilleup-master
a461082 [Xiangrui Meng] make superscript show up correctly in doc
861ec48 [Xiangrui Meng] simplify axpy
62969fa [Xiangrui Meng] use BDV directly in symmetricEigs change the 
computation mode to local-svd, local-eigs, and dist-eigs update tests and docs
c273771 [Li Pu] automatically determine SVD compute mode and parameters
7148426 [Li Pu] improve RowMatrix multiply
5543cce [Li Pu] improve svd api
819824b [Li Pu] add flag for dense svd or sparse svd
eb15100 [Li Pu] fix binary compatibility
4c7aec3 [Li Pu] improve comments
e7850ed [Li Pu] use aggregate and axpy
827411b [Li Pu] fix EOF new line
9c80515 [Li Pu] use non-sparse implementation 

[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-07-16 Thread SparkQA
Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-49196995
  
QA tests have started for PR 1022. This patch merges cleanly. brView 
progress: 
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/16735/consoleFull


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-07-16 Thread SparkQA
Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-49199676
  
QA tests have started for PR 1022. This patch merges cleanly. brView 
progress: 
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/16737/consoleFull


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-07-16 Thread SparkQA
Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-49211292
  
QA results for PR 1022:br- This patch PASSES unit tests.br- This patch 
merges cleanlybr- This patch adds no public classesbrbrFor more 
information see test 
ouptut:brhttps://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/16735/consoleFull


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-07-16 Thread SparkQA
Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-49213268
  
QA results for PR 1022:br- This patch PASSES unit tests.br- This patch 
merges cleanlybr- This patch adds no public classesbrbrFor more 
information see test 
ouptut:brhttps://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/16737/consoleFull


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-07-11 Thread SparkQA
Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-48750411
  
QA tests have started for PR 1022. This patch merges cleanly. brView 
progress: 
https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/16570/consoleFull


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[GitHub] spark pull request: SPARK-1719: spark.*.extraLibraryPath isn't app...

2014-07-11 Thread SparkQA
Github user SparkQA commented on the pull request:

https://github.com/apache/spark/pull/1022#issuecomment-48761837
  
QA results for PR 1022:br- This patch PASSES unit tests.br- This patch 
merges cleanlybr- This patch adds no public classesbrbrFor more 
information see test 
ouptut:brhttps://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder/16570/consoleFull


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