Re: [sage-devel] Re: trouble upgrading to latest stable version
Thank you!
Anne
On Tuesday, May 26, 2020 at 11:59:26 AM UTC-7, Salvatore Stella wrote:
>
> Unpacking of lambda functions' arguments is, alas, no longer supported in
> python3.
>
> cf. https://www.python.org/dev/peps/pep-3113/
>
> S.
>
>
>
> * Anne Schilling > [2020-05-26
> 11:24:01]:
>
> >Ok, success!!! Finally sage compiled for me using Matthias' suggestion of
> >"./configure --without-system-freetype"
> >before make.
> >
> >Something else must have changed though since sage does not like my
> >sage.init file any longer:
> >
> >sage
> >┌┐
> >│ SageMath version 9.1, Release Date: 2020-05-20 │
> >│ Using Python 3.7.7. Type "help()" for help.│
> >└┘
> > File "", line 15
> >latex_options = {'format': "dot2tex",
> >'edge_labels':True,'color_by_label':{Integer(1):"blue", Integer(2):"red",
> >Integer(3):"green", Integer(4):"yellow",-Integer(1):"blue",
> >-Integer(2):"red", -Integer(3):"green",-Integer(4):"yellow"},
> >'edge_options': lambda (u,v,l): {'backward': l is not None and
> >l>Integer(0)}}
> >
> >^
> >SyntaxError: invalid syntax
> >
> >On Tuesday, May 26, 2020 at 12:11:38 AM UTC-7, Matthias Koeppe wrote:
> >>
> >> By "install freetype by hand", do you mean you installed with homebrew?
> >> If not, that's worth trying.
> >> Alternatively, you could try "./configure --without-system-freetype"
> >> before "make".
> >>
> >> Matthias
> >>
> >> On Tuesday, May 26, 2020 at 12:06:57 AM UTC-7, Anne Schilling wrote:
> >>>
> >>> https://www.math.ucdavis.edu/~anne/config.log
> >>>
> >>> On Tuesday, May 26, 2020 at 12:00:46 AM UTC-7, Matthias Koeppe wrote:
>
> config.log again please...
>
> On Monday, May 25, 2020 at 11:53:50 PM UTC-7, Anne Schilling wrote:
> >
> > Thank you! I installed all those. Now it hangs here:
> >
> > https://www.math.ucdavis.edu/~anne/matplotlib-2.2.5.log
> >
> > I tried to install freetype by hand, but it does not seem to help.
> >
> >
> >
> >--
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> "sage-devel" group.
> >To unsubscribe from this group and stop receiving emails from it, send an
> email to sage-...@googlegroups.com .
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> https://groups.google.com/d/msgid/sage-devel/b9bd4221-3f5c-4939-b8ae-7611fc9d3c6b%40googlegroups.com.
>
>
>
>
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Re: [sage-devel] Re: trouble upgrading to latest stable version
Unpacking of lambda functions' arguments is, alas, no longer supported in
python3.
cf. https://www.python.org/dev/peps/pep-3113/
S.
* Anne Schilling [2020-05-26 11:24:01]:
Ok, success!!! Finally sage compiled for me using Matthias' suggestion of
"./configure --without-system-freetype"
before make.
Something else must have changed though since sage does not like my
sage.init file any longer:
sage
┌┐
│ SageMath version 9.1, Release Date: 2020-05-20 │
│ Using Python 3.7.7. Type "help()" for help.│
└┘
File "", line 15
latex_options = {'format': "dot2tex",
'edge_labels':True,'color_by_label':{Integer(1):"blue", Integer(2):"red",
Integer(3):"green", Integer(4):"yellow",-Integer(1):"blue",
-Integer(2):"red", -Integer(3):"green",-Integer(4):"yellow"},
'edge_options': lambda (u,v,l): {'backward': l is not None and
l>Integer(0)}}
^
SyntaxError: invalid syntax
On Tuesday, May 26, 2020 at 12:11:38 AM UTC-7, Matthias Koeppe wrote:
By "install freetype by hand", do you mean you installed with homebrew?
If not, that's worth trying.
Alternatively, you could try "./configure --without-system-freetype"
before "make".
Matthias
On Tuesday, May 26, 2020 at 12:06:57 AM UTC-7, Anne Schilling wrote:
https://www.math.ucdavis.edu/~anne/config.log
On Tuesday, May 26, 2020 at 12:00:46 AM UTC-7, Matthias Koeppe wrote:
config.log again please...
On Monday, May 25, 2020 at 11:53:50 PM UTC-7, Anne Schilling wrote:
Thank you! I installed all those. Now it hangs here:
https://www.math.ucdavis.edu/~anne/matplotlib-2.2.5.log
I tried to install freetype by hand, but it does not seem to help.
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Re: [sage-devel] Re: trouble upgrading to latest stable version
Ok, success!!! Finally sage compiled for me using Matthias' suggestion of
"./configure --without-system-freetype"
before make.
Something else must have changed though since sage does not like my
sage.init file any longer:
sage
┌┐
│ SageMath version 9.1, Release Date: 2020-05-20 │
│ Using Python 3.7.7. Type "help()" for help.│
└┘
File "", line 15
latex_options = {'format': "dot2tex",
'edge_labels':True,'color_by_label':{Integer(1):"blue", Integer(2):"red",
Integer(3):"green", Integer(4):"yellow",-Integer(1):"blue",
-Integer(2):"red", -Integer(3):"green",-Integer(4):"yellow"},
'edge_options': lambda (u,v,l): {'backward': l is not None and
l>Integer(0)}}
^
SyntaxError: invalid syntax
On Tuesday, May 26, 2020 at 12:11:38 AM UTC-7, Matthias Koeppe wrote:
>
> By "install freetype by hand", do you mean you installed with homebrew?
> If not, that's worth trying.
> Alternatively, you could try "./configure --without-system-freetype"
> before "make".
>
> Matthias
>
> On Tuesday, May 26, 2020 at 12:06:57 AM UTC-7, Anne Schilling wrote:
>>
>> https://www.math.ucdavis.edu/~anne/config.log
>>
>> On Tuesday, May 26, 2020 at 12:00:46 AM UTC-7, Matthias Koeppe wrote:
>>>
>>> config.log again please...
>>>
>>> On Monday, May 25, 2020 at 11:53:50 PM UTC-7, Anne Schilling wrote:
Thank you! I installed all those. Now it hangs here:
https://www.math.ucdavis.edu/~anne/matplotlib-2.2.5.log
I tried to install freetype by hand, but it does not seem to help.
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Re: [sage-devel] Re: trouble upgrading to latest stable version
perhaps before recommending Homebrew, I should have checked that they fully support 10.13+, and only support 10.11 and 10.12 on "best-effort" basis. That is we might be just seeing that their best effort could be better, and not Sage's bugs :-( On Tue, May 26, 2020 at 8:39 AM Dima Pasechnik wrote: > > On Tue, May 26, 2020 at 8:06 AM Anne Schilling > wrote: > > > > https://www.math.ucdavis.edu/~anne/config.log > > looks like indeed an old libpng in /usr/local breaks things. > > (typcally it comes from an ancient installation of TeX). > > I would wipe /usr/local (or move it somewhere, for later inspection) > and reinstall Homebrew, then try again. > > > > > On Tuesday, May 26, 2020 at 12:00:46 AM UTC-7, Matthias Koeppe wrote: > >> > >> config.log again please... > >> > >> On Monday, May 25, 2020 at 11:53:50 PM UTC-7, Anne Schilling wrote: > >>> > >>> Thank you! I installed all those. Now it hangs here: > >>> > >>> https://www.math.ucdavis.edu/~anne/matplotlib-2.2.5.log > >>> > >>> I tried to install freetype by hand, but it does not seem to help. > >>> > >>> On Monday, May 25, 2020 at 7:44:16 PM UTC-7, Matthias Koeppe wrote: > > You could try if "brew install libpng" fixes this problem (otherwise > you'd need to manually clean out /usr/local/lib/libpng*) > > Also, note that at the end of the configure output, some commands were > recommended: "brew install boost cmake glpk gsl gd mpfi ninja openblas > pcre ppl r yasm zeromq"; I second this recommendation > > > > On Monday, May 25, 2020 at 7:41:13 PM UTC-7, Matthias Koeppe wrote: > > > > On Monday, May 25, 2020 at 6:59:09 PM UTC-7, Anne Schilling wrote: > >> > >> > >> > >> On Monday, May 25, 2020 at 6:35:01 PM UTC-7, Matthias Koeppe wrote: > >>> > >>> Could you try with the commands: > >>> > >>> . ./.homebrew-build-env > >>> ./configure > >>> > >>> and post the output of the latter? > >> > >> > >> After installing python3 with homebrew is got further. Now it hangs > >> here: > >> > >> https://www.math.ucdavis.edu/~anne/m4ri-20200115.log > >> > > > > Looks like there's some really old stuff in /usr/local, perhaps from an > > ancient homebrew or MacPorts installation?. From the log: > > > > > >> libtool: link: gcc -dynamiclib -o .libs/libm4ri-0.0.20200115.dylib > >> m4ri/.libs/brilliantrussian.o m4ri/.libs/misc.o m4ri/.libs/mzd.o > >> m4ri/.libs/graycode.o m4ri/.libs/strassen.o m4ri/.libs/mzp.o > >> m4ri/.libs/triangular.o m4ri/.libs/triangular_russian.o > >> m4ri/.libs/ple.o m4ri/.libs/ple_russian.o m4ri/.libs/solve.o > >> m4ri/.libs/echelonform.o m4ri/.libs/mmc.o m4ri/.libs/debug_dump.o > >> m4ri/.libs/io.o m4ri/.libs/djb.o m4ri/.libs/mp.o > >> -L/Applications/sage/local/lib -L/usr/local/lib -lpng12 -lz -mmmx > >> -msse -msse2 -msse3 -g -O2 -Wl,-rpath -Wl,/Applications/sage/local/lib > >> -install_name > >> /Applications/sage/local/lib/libm4ri-0.0.20200115.dylib > >> -Wl,-single_module > >> ld: warning: ignoring file /usr/local/lib/libpng12.dylib, missing > >> required architecture x86_64 in file /usr/local/lib/libpng12.dylib (2 > >> slices) > >> Undefined symbols for architecture x86_64: > >> "_png_create_info_struct", referenced from: > >> > >> > > > > > > > > > > > > -- > > You received this message because you are subscribed to the Google Groups > > "sage-devel" group. > > To unsubscribe from this group and stop receiving emails from it, send an > > email to sage-devel+unsubscr...@googlegroups.com. > > To view this discussion on the web visit > > https://groups.google.com/d/msgid/sage-devel/7d1a8c5e-15a5-41b3-ac8e-d1c18ecb0b2b%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/CAAWYfq0AzzaEhZkb7pFZfPz_fw6bxKtfXaK5e8abPUsW4FwuJA%40mail.gmail.com.
Re: [sage-devel] Re: trouble upgrading to latest stable version
On Tue, May 26, 2020 at 8:06 AM Anne Schilling wrote: > > https://www.math.ucdavis.edu/~anne/config.log looks like indeed an old libpng in /usr/local breaks things. (typcally it comes from an ancient installation of TeX). I would wipe /usr/local (or move it somewhere, for later inspection) and reinstall Homebrew, then try again. > > On Tuesday, May 26, 2020 at 12:00:46 AM UTC-7, Matthias Koeppe wrote: >> >> config.log again please... >> >> On Monday, May 25, 2020 at 11:53:50 PM UTC-7, Anne Schilling wrote: >>> >>> Thank you! I installed all those. Now it hangs here: >>> >>> https://www.math.ucdavis.edu/~anne/matplotlib-2.2.5.log >>> >>> I tried to install freetype by hand, but it does not seem to help. >>> >>> On Monday, May 25, 2020 at 7:44:16 PM UTC-7, Matthias Koeppe wrote: You could try if "brew install libpng" fixes this problem (otherwise you'd need to manually clean out /usr/local/lib/libpng*) Also, note that at the end of the configure output, some commands were recommended: "brew install boost cmake glpk gsl gd mpfi ninja openblas pcre ppl r yasm zeromq"; I second this recommendation On Monday, May 25, 2020 at 7:41:13 PM UTC-7, Matthias Koeppe wrote: > > On Monday, May 25, 2020 at 6:59:09 PM UTC-7, Anne Schilling wrote: >> >> >> >> On Monday, May 25, 2020 at 6:35:01 PM UTC-7, Matthias Koeppe wrote: >>> >>> Could you try with the commands: >>> >>> . ./.homebrew-build-env >>> ./configure >>> >>> and post the output of the latter? >> >> >> After installing python3 with homebrew is got further. Now it hangs here: >> >> https://www.math.ucdavis.edu/~anne/m4ri-20200115.log >> > > Looks like there's some really old stuff in /usr/local, perhaps from an > ancient homebrew or MacPorts installation?. From the log: > > >> libtool: link: gcc -dynamiclib -o .libs/libm4ri-0.0.20200115.dylib >> m4ri/.libs/brilliantrussian.o m4ri/.libs/misc.o m4ri/.libs/mzd.o >> m4ri/.libs/graycode.o m4ri/.libs/strassen.o m4ri/.libs/mzp.o >> m4ri/.libs/triangular.o m4ri/.libs/triangular_russian.o m4ri/.libs/ple.o >> m4ri/.libs/ple_russian.o m4ri/.libs/solve.o m4ri/.libs/echelonform.o >> m4ri/.libs/mmc.o m4ri/.libs/debug_dump.o m4ri/.libs/io.o >> m4ri/.libs/djb.o m4ri/.libs/mp.o -L/Applications/sage/local/lib >> -L/usr/local/lib -lpng12 -lz -mmmx -msse -msse2 -msse3 -g -O2 >> -Wl,-rpath -Wl,/Applications/sage/local/lib -install_name >> /Applications/sage/local/lib/libm4ri-0.0.20200115.dylib >> -Wl,-single_module >> ld: warning: ignoring file /usr/local/lib/libpng12.dylib, missing >> required architecture x86_64 in file /usr/local/lib/libpng12.dylib (2 >> slices) >> Undefined symbols for architecture x86_64: >> "_png_create_info_struct", referenced from: >> >> > > > > > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/7d1a8c5e-15a5-41b3-ac8e-d1c18ecb0b2b%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/CAAWYfq24%3DVVBg-96BKFyh0KYgpPN0%3DRvofc0r4t4%3DzEgsuYpLg%40mail.gmail.com.
Re: [sage-devel] Re: trouble upgrading to latest stable version
By "install freetype by hand", do you mean you installed with homebrew? If not, that's worth trying. Alternatively, you could try "./configure --without-system-freetype" before "make". Matthias On Tuesday, May 26, 2020 at 12:06:57 AM UTC-7, Anne Schilling wrote: > > https://www.math.ucdavis.edu/~anne/config.log > > On Tuesday, May 26, 2020 at 12:00:46 AM UTC-7, Matthias Koeppe wrote: >> >> config.log again please... >> >> On Monday, May 25, 2020 at 11:53:50 PM UTC-7, Anne Schilling wrote: >>> >>> Thank you! I installed all those. Now it hangs here: >>> >>> https://www.math.ucdavis.edu/~anne/matplotlib-2.2.5.log >>> >>> I tried to install freetype by hand, but it does not seem to help. >>> >>> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/de5b7fbf-1b9f-4d7a-8388-4c543d141d6a%40googlegroups.com.
Re: [sage-devel] Re: trouble upgrading to latest stable version
https://www.math.ucdavis.edu/~anne/config.log On Tuesday, May 26, 2020 at 12:00:46 AM UTC-7, Matthias Koeppe wrote: > > config.log again please... > > On Monday, May 25, 2020 at 11:53:50 PM UTC-7, Anne Schilling wrote: >> >> Thank you! I installed all those. Now it hangs here: >> >> https://www.math.ucdavis.edu/~anne/matplotlib-2.2.5.log >> >> I tried to install freetype by hand, but it does not seem to help. >> >> On Monday, May 25, 2020 at 7:44:16 PM UTC-7, Matthias Koeppe wrote: >>> >>> You could try if "brew install libpng" fixes this problem (otherwise >>> you'd need to manually clean out /usr/local/lib/libpng*) >>> >>> Also, note that at the end of the configure output, some commands were >>> recommended: "brew install boost cmake glpk gsl gd mpfi ninja openblas pcre >>> ppl r yasm zeromq"; I second this recommendation >>> >>> >>> >>> On Monday, May 25, 2020 at 7:41:13 PM UTC-7, Matthias Koeppe wrote: On Monday, May 25, 2020 at 6:59:09 PM UTC-7, Anne Schilling wrote: > > > > On Monday, May 25, 2020 at 6:35:01 PM UTC-7, Matthias Koeppe wrote: >> >> Could you try with the commands: >> >> . ./.homebrew-build-env >> ./configure >> >> and post the output of the latter? >> > > After installing python3 with homebrew is got further. Now it hangs > here: > > https://www.math.ucdavis.edu/~anne/m4ri-20200115.log > > Looks like there's some really old stuff in /usr/local, perhaps from an ancient homebrew or MacPorts installation?. From the log: libtool: link: gcc -dynamiclib -o .libs/libm4ri-0.0.20200115.dylib m4ri/.libs/brilliantrussian.o m4ri/.libs/misc.o m4ri/.libs/mzd.o m4ri/.libs/graycode.o m4ri/.libs/strassen.o m4ri/.libs/mzp.o m4ri/.libs/triangular.o m4ri/.libs/triangular_russian.o m4ri/.libs/ple.o m4ri/.libs/ple_russian.o m4ri/.libs/solve.o m4ri/.libs/echelonform.o m4ri/.libs/mmc.o m4ri/.libs/debug_dump.o m4ri/.libs/io.o m4ri/.libs/djb.o m4ri/.libs/mp.o -L/Applications/sage/local/lib -L/usr/local/lib -lpng12 -lz -mmmx -msse -msse2 -msse3 -g -O2 -Wl,-rpath -Wl,/Applications/sage/local/lib -install_name /Applications/sage/local/lib/libm4ri-0.0.20200115.dylib -Wl,-single_module > ld: warning: ignoring file /usr/local/lib/libpng12.dylib, missing > required architecture x86_64 in file /usr/local/lib/libpng12.dylib (2 > slices) > Undefined symbols for architecture x86_64: > "_png_create_info_struct", referenced from: > > > >>> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/7d1a8c5e-15a5-41b3-ac8e-d1c18ecb0b2b%40googlegroups.com.
Re: [sage-devel] Re: trouble upgrading to latest stable version
config.log again please... On Monday, May 25, 2020 at 11:53:50 PM UTC-7, Anne Schilling wrote: > > Thank you! I installed all those. Now it hangs here: > > https://www.math.ucdavis.edu/~anne/matplotlib-2.2.5.log > > I tried to install freetype by hand, but it does not seem to help. > > On Monday, May 25, 2020 at 7:44:16 PM UTC-7, Matthias Koeppe wrote: >> >> You could try if "brew install libpng" fixes this problem (otherwise >> you'd need to manually clean out /usr/local/lib/libpng*) >> >> Also, note that at the end of the configure output, some commands were >> recommended: "brew install boost cmake glpk gsl gd mpfi ninja openblas pcre >> ppl r yasm zeromq"; I second this recommendation >> >> >> >> On Monday, May 25, 2020 at 7:41:13 PM UTC-7, Matthias Koeppe wrote: >>> >>> On Monday, May 25, 2020 at 6:59:09 PM UTC-7, Anne Schilling wrote: On Monday, May 25, 2020 at 6:35:01 PM UTC-7, Matthias Koeppe wrote: > > Could you try with the commands: > > . ./.homebrew-build-env > ./configure > > and post the output of the latter? > After installing python3 with homebrew is got further. Now it hangs here: https://www.math.ucdavis.edu/~anne/m4ri-20200115.log >>> Looks like there's some really old stuff in /usr/local, perhaps from an >>> ancient homebrew or MacPorts installation?. From the log: >>> >>> >>> libtool: link: gcc -dynamiclib -o .libs/libm4ri-0.0.20200115.dylib >>> m4ri/.libs/brilliantrussian.o m4ri/.libs/misc.o m4ri/.libs/mzd.o >>> m4ri/.libs/graycode.o m4ri/.libs/strassen.o m4ri/.libs/mzp.o >>> m4ri/.libs/triangular.o m4ri/.libs/triangular_russian.o m4ri/.libs/ple.o >>> m4ri/.libs/ple_russian.o m4ri/.libs/solve.o m4ri/.libs/echelonform.o >>> m4ri/.libs/mmc.o m4ri/.libs/debug_dump.o m4ri/.libs/io.o m4ri/.libs/djb.o >>> m4ri/.libs/mp.o -L/Applications/sage/local/lib -L/usr/local/lib -lpng12 >>> -lz -mmmx -msse -msse2 -msse3 -g -O2 -Wl,-rpath >>> -Wl,/Applications/sage/local/lib -install_name >>> /Applications/sage/local/lib/libm4ri-0.0.20200115.dylib -Wl,-single_module ld: warning: ignoring file /usr/local/lib/libpng12.dylib, missing required architecture x86_64 in file /usr/local/lib/libpng12.dylib (2 slices) Undefined symbols for architecture x86_64: "_png_create_info_struct", referenced from: >>> >>> >>> >>> >> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/a2c520d4-8656-4e8b-9d85-8008b3cfacbe%40googlegroups.com.
Re: [sage-devel] Re: trouble upgrading to latest stable version
Thank you! I installed all those. Now it hangs here: https://www.math.ucdavis.edu/~anne/matplotlib-2.2.5.log I tried to install freetype by hand, but it does not seem to help. On Monday, May 25, 2020 at 7:44:16 PM UTC-7, Matthias Koeppe wrote: > > You could try if "brew install libpng" fixes this problem (otherwise you'd > need to manually clean out /usr/local/lib/libpng*) > > Also, note that at the end of the configure output, some commands were > recommended: "brew install boost cmake glpk gsl gd mpfi ninja openblas pcre > ppl r yasm zeromq"; I second this recommendation > > > > On Monday, May 25, 2020 at 7:41:13 PM UTC-7, Matthias Koeppe wrote: >> >> On Monday, May 25, 2020 at 6:59:09 PM UTC-7, Anne Schilling wrote: >>> >>> >>> >>> On Monday, May 25, 2020 at 6:35:01 PM UTC-7, Matthias Koeppe wrote: Could you try with the commands: . ./.homebrew-build-env ./configure and post the output of the latter? >>> >>> After installing python3 with homebrew is got further. Now it hangs here: >>> >>> https://www.math.ucdavis.edu/~anne/m4ri-20200115.log >>> >>> >> Looks like there's some really old stuff in /usr/local, perhaps from an >> ancient homebrew or MacPorts installation?. From the log: >> >> >> libtool: link: gcc -dynamiclib -o .libs/libm4ri-0.0.20200115.dylib >> m4ri/.libs/brilliantrussian.o m4ri/.libs/misc.o m4ri/.libs/mzd.o >> m4ri/.libs/graycode.o m4ri/.libs/strassen.o m4ri/.libs/mzp.o >> m4ri/.libs/triangular.o m4ri/.libs/triangular_russian.o m4ri/.libs/ple.o >> m4ri/.libs/ple_russian.o m4ri/.libs/solve.o m4ri/.libs/echelonform.o >> m4ri/.libs/mmc.o m4ri/.libs/debug_dump.o m4ri/.libs/io.o m4ri/.libs/djb.o >> m4ri/.libs/mp.o -L/Applications/sage/local/lib -L/usr/local/lib -lpng12 >> -lz -mmmx -msse -msse2 -msse3 -g -O2 -Wl,-rpath >> -Wl,/Applications/sage/local/lib -install_name >> /Applications/sage/local/lib/libm4ri-0.0.20200115.dylib -Wl,-single_module >>> ld: warning: ignoring file /usr/local/lib/libpng12.dylib, missing required >>> architecture x86_64 in file /usr/local/lib/libpng12.dylib (2 slices) >>> Undefined symbols for architecture x86_64: >>> "_png_create_info_struct", referenced from: >>> >>> >>> >> >> >> >> > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/fb9eddc7-e0f4-4ce8-9d66-9b86d346e7aa%40googlegroups.com.
Re: [sage-devel] Re: trouble upgrading to latest stable version
You could try if "brew install libpng" fixes this problem (otherwise you'd need to manually clean out /usr/local/lib/libpng*) Also, note that at the end of the configure output, some commands were recommended: "brew install boost cmake glpk gsl gd mpfi ninja openblas pcre ppl r yasm zeromq"; I second this recommendation On Monday, May 25, 2020 at 7:41:13 PM UTC-7, Matthias Koeppe wrote: > > On Monday, May 25, 2020 at 6:59:09 PM UTC-7, Anne Schilling wrote: >> >> >> >> On Monday, May 25, 2020 at 6:35:01 PM UTC-7, Matthias Koeppe wrote: >>> >>> Could you try with the commands: >>> >>> . ./.homebrew-build-env >>> ./configure >>> >>> and post the output of the latter? >>> >> >> After installing python3 with homebrew is got further. Now it hangs here: >> >> https://www.math.ucdavis.edu/~anne/m4ri-20200115.log >> >> > Looks like there's some really old stuff in /usr/local, perhaps from an > ancient homebrew or MacPorts installation?. From the log: > > > libtool: link: gcc -dynamiclib -o .libs/libm4ri-0.0.20200115.dylib > m4ri/.libs/brilliantrussian.o m4ri/.libs/misc.o m4ri/.libs/mzd.o > m4ri/.libs/graycode.o m4ri/.libs/strassen.o m4ri/.libs/mzp.o > m4ri/.libs/triangular.o m4ri/.libs/triangular_russian.o m4ri/.libs/ple.o > m4ri/.libs/ple_russian.o m4ri/.libs/solve.o m4ri/.libs/echelonform.o > m4ri/.libs/mmc.o m4ri/.libs/debug_dump.o m4ri/.libs/io.o m4ri/.libs/djb.o > m4ri/.libs/mp.o -L/Applications/sage/local/lib -L/usr/local/lib -lpng12 -lz > -mmmx -msse -msse2 -msse3 -g -O2 -Wl,-rpath -Wl,/Applications/sage/local/lib > -install_name /Applications/sage/local/lib/libm4ri-0.0.20200115.dylib > -Wl,-single_module >> ld: warning: ignoring file /usr/local/lib/libpng12.dylib, missing required >> architecture x86_64 in file /usr/local/lib/libpng12.dylib (2 slices) >> Undefined symbols for architecture x86_64: >> "_png_create_info_struct", referenced from: >> >> >> > > > > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/2284d9e4-a5d0-4c62-8959-32127d9686be%40googlegroups.com.
Re: [sage-devel] Re: trouble upgrading to latest stable version
On Monday, May 25, 2020 at 6:59:09 PM UTC-7, Anne Schilling wrote: > > > > On Monday, May 25, 2020 at 6:35:01 PM UTC-7, Matthias Koeppe wrote: >> >> Could you try with the commands: >> >> . ./.homebrew-build-env >> ./configure >> >> and post the output of the latter? >> > > After installing python3 with homebrew is got further. Now it hangs here: > > https://www.math.ucdavis.edu/~anne/m4ri-20200115.log > > Looks like there's some really old stuff in /usr/local, perhaps from an ancient homebrew or MacPorts installation?. From the log: libtool: link: gcc -dynamiclib -o .libs/libm4ri-0.0.20200115.dylib m4ri/.libs/brilliantrussian.o m4ri/.libs/misc.o m4ri/.libs/mzd.o m4ri/.libs/graycode.o m4ri/.libs/strassen.o m4ri/.libs/mzp.o m4ri/.libs/triangular.o m4ri/.libs/triangular_russian.o m4ri/.libs/ple.o m4ri/.libs/ple_russian.o m4ri/.libs/solve.o m4ri/.libs/echelonform.o m4ri/.libs/mmc.o m4ri/.libs/debug_dump.o m4ri/.libs/io.o m4ri/.libs/djb.o m4ri/.libs/mp.o -L/Applications/sage/local/lib -L/usr/local/lib -lpng12 -lz -mmmx -msse -msse2 -msse3 -g -O2 -Wl,-rpath -Wl,/Applications/sage/local/lib -install_name /Applications/sage/local/lib/libm4ri-0.0.20200115.dylib -Wl,-single_module > ld: warning: ignoring file /usr/local/lib/libpng12.dylib, missing required > architecture x86_64 in file /usr/local/lib/libpng12.dylib (2 slices) > Undefined symbols for architecture x86_64: > "_png_create_info_struct", referenced from: > > > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/b83760ce-f626-41b4-af2d-fee4c0ec7288%40googlegroups.com.
Re: [sage-devel] Re: trouble upgrading to latest stable version
Could you try with the commands: . ./.homebrew-build-env ./configure and post the output of the latter? On Monday, May 25, 2020 at 6:13:46 PM UTC-7, Anne Schilling wrote: > > Thank you! I have homebrew installed. So I just do > > brew install python3 ? > > Installing the python package that Dima suggested did not help. > I am trying to avoid installing a new operating system right now since I > anyway ordered a new computer. > > Best, > > Anne > > On Monday, May 25, 2020 at 6:05:42 PM UTC-7, Matthias Koeppe wrote: >> >> I agree, updating the OS if possible, and/or installing homebrew and >> python3 from homebrew would be the way to go. >> >> On Monday, May 25, 2020 at 4:37:22 PM UTC-7, Dima Pasechnik wrote: >>> >>> Hi Anne, >>> openssl is a never-ending problem on macOS, and in your case it's made >>> worse by an old macOS version. >>> One cannot expect much support and development on macOS 10.12, as it >>> has reached EOL in 2019. >>> >>> One way out would be to install Python 3.7 from cpython, and then Sage >>> will just use it, without building. >>> >>> https://www.python.org/ftp/python/3.7.7/python-3.7.7-macosx10.9.pkg >>> >>> (or, alternatively, install Homebrew, then you can use many more >>> packages from there without building) >>> >>> HTH >>> Dima >>> >>> On Tue, May 26, 2020 at 12:11 AM Anne Schilling >>> wrote: >>> > >>> > Hi Dima, >>> > >>> > Thank you! I have run make distclean and now it gets stuck here: >>> > >>> > https://www.math.ucdavis.edu/~anne/python3-3.7.3.p1.log >>> > >>> > It looks like there is a problem with openssl. >>> > >>> > Any idea? >>> > >>> > Anne >>> > >>> > On Monday, May 25, 2020 at 10:52:29 AM UTC-7, Dima Pasechnik wrote: >>> >> >>> >> Hi Anne, >>> >> it appears from your config.log that you did not do >>> >> >>> >> make distclean >>> >> >>> >> moreover, it says that R is already installed, and should not get >>> reinstalled. >>> >> >>> >> Does Sage start? I guess not. >>> >> If before the latest git pull you had an oldish Sage (closer to 9.0 >>> than to 9.1) >>> >> it appears that the build system is totally confused. >>> >> So you most probably need to do distclean. >>> >> >>> >> HTH >>> >> Dima >>> >> >>> >> >>> >> >>> >> On Mon, 25 May 2020, 17:28 Anne Schilling, >>> wrote: >>> >>> >>> >>> Hi Dima, >>> >>> >>> >>> I pulled the changes using git in the master branch and started make >>> (or make distclean). >>> >>> This is running on MacOS 10.12.6 . >>> >>> >>> >>> https://www.math.ucdavis.edu/~anne/config.log >>> >>> https://www.math.ucdavis.edu/~anne/r-3.6.2.p0.log >>> >>> https://www.math.ucdavis.edu/~anne/dochtml.log >>> >>> >>> >>> Thank you! >>> >>> >>> >>> Anne >>> >>> >>> >>> On Monday, May 25, 2020 at 1:29:33 AM UTC-7, Dima Pasechnik wrote: >>> >>> On Mon, May 25, 2020 at 7:44 AM Anne Schilling >>> wrote: >>> > >>> > >>> > >>> > On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe >>> wrote: >>> >> >>> >> Hi Anne, >>> >> >>> >> On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling >>> wrote: >>> >>> >>> >>> Downloading the Sage mirror list >>> >>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has >>> syntax error: error code: 1010 >>> >>> Searching fastest mirror >>> >>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any >>> mirror directly and no proxy set >>> >> >>> >> >>> >> Here's a workaround: >>> >> >>> >> echo '["http://files.sagemath.org/;]' > upstream/mirror_list >>> >> >>> >> >>> >> I hope this helps, >>> >> Matthias >>> > >>> > >>> > Thank you, that got me a lot further. But now it is stuck here: >>> > >>> > [matplotlib-2.2.5] running install_egg_info >>> > [matplotlib-2.2.5] running egg_info >>> > [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO >>> > [matplotlib-2.2.5] writing dependency_links to >>> lib/matplotlib.egg-info/dependency_links.txt >>> > [matplotlib-2.2.5] writing namespace_packages to >>> lib/matplotlib.egg-info/namespace_packages.txt >>> > [matplotlib-2.2.5] writing requirements to >>> lib/matplotlib.egg-info/requires.txt >>> > [matplotlib-2.2.5] writing top-level names to >>> lib/matplotlib.egg-info/top_level.txt >>> > [matplotlib-2.2.5] reading manifest file >>> 'lib/matplotlib.egg-info/SOURCES.txt' >>> > [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' >>> > [matplotlib-2.2.5] writing manifest file >>> 'lib/matplotlib.egg-info/SOURCES.txt' >>> > [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to >>> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info >>> >>> >>> > [matplotlib-2.2.5] Installing >>>
Re: [sage-devel] Re: trouble upgrading to latest stable version
Thank you! I have homebrew installed. So I just do brew install python3 ? Installing the python package that Dima suggested did not help. I am trying to avoid installing a new operating system right now since I anyway ordered a new computer. Best, Anne On Monday, May 25, 2020 at 6:05:42 PM UTC-7, Matthias Koeppe wrote: > > I agree, updating the OS if possible, and/or installing homebrew and > python3 from homebrew would be the way to go. > > On Monday, May 25, 2020 at 4:37:22 PM UTC-7, Dima Pasechnik wrote: >> >> Hi Anne, >> openssl is a never-ending problem on macOS, and in your case it's made >> worse by an old macOS version. >> One cannot expect much support and development on macOS 10.12, as it >> has reached EOL in 2019. >> >> One way out would be to install Python 3.7 from cpython, and then Sage >> will just use it, without building. >> >> https://www.python.org/ftp/python/3.7.7/python-3.7.7-macosx10.9.pkg >> >> (or, alternatively, install Homebrew, then you can use many more >> packages from there without building) >> >> HTH >> Dima >> >> On Tue, May 26, 2020 at 12:11 AM Anne Schilling >> wrote: >> > >> > Hi Dima, >> > >> > Thank you! I have run make distclean and now it gets stuck here: >> > >> > https://www.math.ucdavis.edu/~anne/python3-3.7.3.p1.log >> > >> > It looks like there is a problem with openssl. >> > >> > Any idea? >> > >> > Anne >> > >> > On Monday, May 25, 2020 at 10:52:29 AM UTC-7, Dima Pasechnik wrote: >> >> >> >> Hi Anne, >> >> it appears from your config.log that you did not do >> >> >> >> make distclean >> >> >> >> moreover, it says that R is already installed, and should not get >> reinstalled. >> >> >> >> Does Sage start? I guess not. >> >> If before the latest git pull you had an oldish Sage (closer to 9.0 >> than to 9.1) >> >> it appears that the build system is totally confused. >> >> So you most probably need to do distclean. >> >> >> >> HTH >> >> Dima >> >> >> >> >> >> >> >> On Mon, 25 May 2020, 17:28 Anne Schilling, >> wrote: >> >>> >> >>> Hi Dima, >> >>> >> >>> I pulled the changes using git in the master branch and started make >> (or make distclean). >> >>> This is running on MacOS 10.12.6 . >> >>> >> >>> https://www.math.ucdavis.edu/~anne/config.log >> >>> https://www.math.ucdavis.edu/~anne/r-3.6.2.p0.log >> >>> https://www.math.ucdavis.edu/~anne/dochtml.log >> >>> >> >>> Thank you! >> >>> >> >>> Anne >> >>> >> >>> On Monday, May 25, 2020 at 1:29:33 AM UTC-7, Dima Pasechnik wrote: >> >> On Mon, May 25, 2020 at 7:44 AM Anne Schilling >> wrote: >> > >> > >> > >> > On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe >> wrote: >> >> >> >> Hi Anne, >> >> >> >> On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling >> wrote: >> >>> >> >>> Downloading the Sage mirror list >> >>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has >> syntax error: error code: 1010 >> >>> Searching fastest mirror >> >>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any >> mirror directly and no proxy set >> >> >> >> >> >> Here's a workaround: >> >> >> >> echo '["http://files.sagemath.org/;]' > upstream/mirror_list >> >> >> >> >> >> I hope this helps, >> >> Matthias >> > >> > >> > Thank you, that got me a lot further. But now it is stuck here: >> > >> > [matplotlib-2.2.5] running install_egg_info >> > [matplotlib-2.2.5] running egg_info >> > [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO >> > [matplotlib-2.2.5] writing dependency_links to >> lib/matplotlib.egg-info/dependency_links.txt >> > [matplotlib-2.2.5] writing namespace_packages to >> lib/matplotlib.egg-info/namespace_packages.txt >> > [matplotlib-2.2.5] writing requirements to >> lib/matplotlib.egg-info/requires.txt >> > [matplotlib-2.2.5] writing top-level names to >> lib/matplotlib.egg-info/top_level.txt >> > [matplotlib-2.2.5] reading manifest file >> 'lib/matplotlib.egg-info/SOURCES.txt' >> > [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' >> > [matplotlib-2.2.5] writing manifest file >> 'lib/matplotlib.egg-info/SOURCES.txt' >> > [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to >> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info >> >> >> > [matplotlib-2.2.5] Installing >> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7-nspkg.pth >> >> >> > [matplotlib-2.2.5] running install_scripts >> > [matplotlib-2.2.5] writing list of installed files to >>
Re: [sage-devel] Re: trouble upgrading to latest stable version
I agree, updating the OS if possible, and/or installing homebrew and python3 from homebrew would be the way to go. On Monday, May 25, 2020 at 4:37:22 PM UTC-7, Dima Pasechnik wrote: > > Hi Anne, > openssl is a never-ending problem on macOS, and in your case it's made > worse by an old macOS version. > One cannot expect much support and development on macOS 10.12, as it > has reached EOL in 2019. > > One way out would be to install Python 3.7 from cpython, and then Sage > will just use it, without building. > > https://www.python.org/ftp/python/3.7.7/python-3.7.7-macosx10.9.pkg > > (or, alternatively, install Homebrew, then you can use many more > packages from there without building) > > HTH > Dima > > On Tue, May 26, 2020 at 12:11 AM Anne Schilling > > wrote: > > > > Hi Dima, > > > > Thank you! I have run make distclean and now it gets stuck here: > > > > https://www.math.ucdavis.edu/~anne/python3-3.7.3.p1.log > > > > It looks like there is a problem with openssl. > > > > Any idea? > > > > Anne > > > > On Monday, May 25, 2020 at 10:52:29 AM UTC-7, Dima Pasechnik wrote: > >> > >> Hi Anne, > >> it appears from your config.log that you did not do > >> > >> make distclean > >> > >> moreover, it says that R is already installed, and should not get > reinstalled. > >> > >> Does Sage start? I guess not. > >> If before the latest git pull you had an oldish Sage (closer to 9.0 > than to 9.1) > >> it appears that the build system is totally confused. > >> So you most probably need to do distclean. > >> > >> HTH > >> Dima > >> > >> > >> > >> On Mon, 25 May 2020, 17:28 Anne Schilling, > wrote: > >>> > >>> Hi Dima, > >>> > >>> I pulled the changes using git in the master branch and started make > (or make distclean). > >>> This is running on MacOS 10.12.6 . > >>> > >>> https://www.math.ucdavis.edu/~anne/config.log > >>> https://www.math.ucdavis.edu/~anne/r-3.6.2.p0.log > >>> https://www.math.ucdavis.edu/~anne/dochtml.log > >>> > >>> Thank you! > >>> > >>> Anne > >>> > >>> On Monday, May 25, 2020 at 1:29:33 AM UTC-7, Dima Pasechnik wrote: > > On Mon, May 25, 2020 at 7:44 AM Anne Schilling > wrote: > > > > > > > > On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe > wrote: > >> > >> Hi Anne, > >> > >> On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling wrote: > >>> > >>> Downloading the Sage mirror list > >>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has > syntax error: error code: 1010 > >>> Searching fastest mirror > >>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror > directly and no proxy set > >> > >> > >> Here's a workaround: > >> > >> echo '["http://files.sagemath.org/;]' > upstream/mirror_list > >> > >> > >> I hope this helps, > >> Matthias > > > > > > Thank you, that got me a lot further. But now it is stuck here: > > > > [matplotlib-2.2.5] running install_egg_info > > [matplotlib-2.2.5] running egg_info > > [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO > > [matplotlib-2.2.5] writing dependency_links to > lib/matplotlib.egg-info/dependency_links.txt > > [matplotlib-2.2.5] writing namespace_packages to > lib/matplotlib.egg-info/namespace_packages.txt > > [matplotlib-2.2.5] writing requirements to > lib/matplotlib.egg-info/requires.txt > > [matplotlib-2.2.5] writing top-level names to > lib/matplotlib.egg-info/top_level.txt > > [matplotlib-2.2.5] reading manifest file > 'lib/matplotlib.egg-info/SOURCES.txt' > > [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' > > [matplotlib-2.2.5] writing manifest file > 'lib/matplotlib.egg-info/SOURCES.txt' > > [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info > > > > [matplotlib-2.2.5] Installing > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7-nspkg.pth > > > > [matplotlib-2.2.5] running install_scripts > > [matplotlib-2.2.5] writing list of installed files to > '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-record-rmt5izi9/install-record.txt' > > > > [matplotlib-2.2.5] Running setup.py install for matplotlib: > finished with status 'done' > > [matplotlib-2.2.5] Removing source in > /private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-build-l19fxrx8 > > > > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 > > [matplotlib-2.2.5] Cleaning up... > > [matplotlib-2.2.5] Removed build tracker >
Re: [sage-devel] Re: trouble upgrading to latest stable version
Hi Anne, openssl is a never-ending problem on macOS, and in your case it's made worse by an old macOS version. One cannot expect much support and development on macOS 10.12, as it has reached EOL in 2019. One way out would be to install Python 3.7 from cpython, and then Sage will just use it, without building. https://www.python.org/ftp/python/3.7.7/python-3.7.7-macosx10.9.pkg (or, alternatively, install Homebrew, then you can use many more packages from there without building) HTH Dima On Tue, May 26, 2020 at 12:11 AM Anne Schilling wrote: > > Hi Dima, > > Thank you! I have run make distclean and now it gets stuck here: > > https://www.math.ucdavis.edu/~anne/python3-3.7.3.p1.log > > It looks like there is a problem with openssl. > > Any idea? > > Anne > > On Monday, May 25, 2020 at 10:52:29 AM UTC-7, Dima Pasechnik wrote: >> >> Hi Anne, >> it appears from your config.log that you did not do >> >> make distclean >> >> moreover, it says that R is already installed, and should not get >> reinstalled. >> >> Does Sage start? I guess not. >> If before the latest git pull you had an oldish Sage (closer to 9.0 than to >> 9.1) >> it appears that the build system is totally confused. >> So you most probably need to do distclean. >> >> HTH >> Dima >> >> >> >> On Mon, 25 May 2020, 17:28 Anne Schilling, wrote: >>> >>> Hi Dima, >>> >>> I pulled the changes using git in the master branch and started make (or >>> make distclean). >>> This is running on MacOS 10.12.6 . >>> >>> https://www.math.ucdavis.edu/~anne/config.log >>> https://www.math.ucdavis.edu/~anne/r-3.6.2.p0.log >>> https://www.math.ucdavis.edu/~anne/dochtml.log >>> >>> Thank you! >>> >>> Anne >>> >>> On Monday, May 25, 2020 at 1:29:33 AM UTC-7, Dima Pasechnik wrote: On Mon, May 25, 2020 at 7:44 AM Anne Schilling wrote: > > > > On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe wrote: >> >> Hi Anne, >> >> On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling wrote: >>> >>> Downloading the Sage mirror list >>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax >>> error: error code: 1010 >>> Searching fastest mirror >>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror >>> directly and no proxy set >> >> >> Here's a workaround: >> >> echo '["http://files.sagemath.org/;]' > upstream/mirror_list >> >> >> I hope this helps, >> Matthias > > > Thank you, that got me a lot further. But now it is stuck here: > > [matplotlib-2.2.5] running install_egg_info > [matplotlib-2.2.5] running egg_info > [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO > [matplotlib-2.2.5] writing dependency_links to > lib/matplotlib.egg-info/dependency_links.txt > [matplotlib-2.2.5] writing namespace_packages to > lib/matplotlib.egg-info/namespace_packages.txt > [matplotlib-2.2.5] writing requirements to > lib/matplotlib.egg-info/requires.txt > [matplotlib-2.2.5] writing top-level names to > lib/matplotlib.egg-info/top_level.txt > [matplotlib-2.2.5] reading manifest file > 'lib/matplotlib.egg-info/SOURCES.txt' > [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' > [matplotlib-2.2.5] writing manifest file > 'lib/matplotlib.egg-info/SOURCES.txt' > [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info > [matplotlib-2.2.5] Installing > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7-nspkg.pth > [matplotlib-2.2.5] running install_scripts > [matplotlib-2.2.5] writing list of installed files to > '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-record-rmt5izi9/install-record.txt' > [matplotlib-2.2.5] Running setup.py install for matplotlib: finished > with status 'done' > [matplotlib-2.2.5] Removing source in > /private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-build-l19fxrx8 > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 > [matplotlib-2.2.5] Cleaning up... > [matplotlib-2.2.5] Removed build tracker > '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-tracker-rxz0bq3j' > [matplotlib-2.2.5] > [matplotlib-2.2.5] real6m10.218s > [matplotlib-2.2.5] user0m35.266s > [matplotlib-2.2.5] sys0m4.548s > [matplotlib-2.2.5] Copying package files from temporary location > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst to > /Applications/sage/local > [matplotlib-2.2.5] Successfully
Re: [sage-devel] Re: trouble upgrading to latest stable version
Hi Dima, Thank you! I have run make distclean and now it gets stuck here: https://www.math.ucdavis.edu/~anne/python3-3.7.3.p1.log It looks like there is a problem with openssl. Any idea? Anne On Monday, May 25, 2020 at 10:52:29 AM UTC-7, Dima Pasechnik wrote: > > Hi Anne, > it appears from your config.log that you did not do > > make distclean > > moreover, it says that R is already installed, and should not get > reinstalled. > > Does Sage start? I guess not. > If before the latest git pull you had an oldish Sage (closer to 9.0 than > to 9.1) > it appears that the build system is totally confused. > So you most probably need to do distclean. > > HTH > Dima > > > > On Mon, 25 May 2020, 17:28 Anne Schilling, > wrote: > >> Hi Dima, >> >> I pulled the changes using git in the master branch and started make (or >> make distclean). >> This is running on MacOS 10.12.6 . >> >> https://www.math.ucdavis.edu/~anne/config.log >> https://www.math.ucdavis.edu/~anne/r-3.6.2.p0.log >> https://www.math.ucdavis.edu/~anne/dochtml.log >> >> Thank you! >> >> Anne >> >> On Monday, May 25, 2020 at 1:29:33 AM UTC-7, Dima Pasechnik wrote: >>> >>> On Mon, May 25, 2020 at 7:44 AM Anne Schilling >>> wrote: >>> > >>> > >>> > >>> > On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe wrote: >>> >> >>> >> Hi Anne, >>> >> >>> >> On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling wrote: >>> >>> >>> >>> Downloading the Sage mirror list >>> >>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax >>> error: error code: 1010 >>> >>> Searching fastest mirror >>> >>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror >>> directly and no proxy set >>> >> >>> >> >>> >> Here's a workaround: >>> >> >>> >> echo '["http://files.sagemath.org/;]' > upstream/mirror_list >>> >> >>> >> >>> >> I hope this helps, >>> >> Matthias >>> > >>> > >>> > Thank you, that got me a lot further. But now it is stuck here: >>> > >>> > [matplotlib-2.2.5] running install_egg_info >>> > [matplotlib-2.2.5] running egg_info >>> > [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO >>> > [matplotlib-2.2.5] writing dependency_links to >>> lib/matplotlib.egg-info/dependency_links.txt >>> > [matplotlib-2.2.5] writing namespace_packages to >>> lib/matplotlib.egg-info/namespace_packages.txt >>> > [matplotlib-2.2.5] writing requirements to >>> lib/matplotlib.egg-info/requires.txt >>> > [matplotlib-2.2.5] writing top-level names to >>> lib/matplotlib.egg-info/top_level.txt >>> > [matplotlib-2.2.5] reading manifest file >>> 'lib/matplotlib.egg-info/SOURCES.txt' >>> > [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' >>> > [matplotlib-2.2.5] writing manifest file >>> 'lib/matplotlib.egg-info/SOURCES.txt' >>> > [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to >>> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info >>> >>> >>> > [matplotlib-2.2.5] Installing >>> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7-nspkg.pth >>> >>> >>> > [matplotlib-2.2.5] running install_scripts >>> > [matplotlib-2.2.5] writing list of installed files to >>> '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-record-rmt5izi9/install-record.txt' >>> >>> >>> > [matplotlib-2.2.5] Running setup.py install for matplotlib: >>> finished with status 'done' >>> > [matplotlib-2.2.5] Removing source in >>> /private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-build-l19fxrx8 >>> >>> >>> > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 >>> > [matplotlib-2.2.5] Cleaning up... >>> > [matplotlib-2.2.5] Removed build tracker >>> '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-tracker-rxz0bq3j' >>> >>> >>> > [matplotlib-2.2.5] >>> > [matplotlib-2.2.5] real6m10.218s >>> > [matplotlib-2.2.5] user0m35.266s >>> > [matplotlib-2.2.5] sys0m4.548s >>> > [matplotlib-2.2.5] Copying package files from temporary location >>> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst to >>> /Applications/sage/local >>> > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 >>> > [matplotlib-2.2.5] Deleting temporary build directory >>> > [matplotlib-2.2.5] >>> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5 >>> > [matplotlib-2.2.5] Finished installing matplotlib-2.2.5.spkg >>> > make[2]: *** [all-start] Error 2 >>> > >>> > real48m47.186s >>> > user162m58.074s >>> > sys27m3.413s >>> > *** >>> > Error building Sage. >>> > >>> > The following package(s) may have failed to build (not necessarily >>> > during this run of 'make all-start'): >>> > >>> > * package:
Re: [sage-devel] Re: trouble upgrading to latest stable version
Hi Anne, it appears from your config.log that you did not do make distclean moreover, it says that R is already installed, and should not get reinstalled. Does Sage start? I guess not. If before the latest git pull you had an oldish Sage (closer to 9.0 than to 9.1) it appears that the build system is totally confused. So you most probably need to do distclean. HTH Dima On Mon, 25 May 2020, 17:28 Anne Schilling, wrote: > Hi Dima, > > I pulled the changes using git in the master branch and started make (or > make distclean). > This is running on MacOS 10.12.6 . > > https://www.math.ucdavis.edu/~anne/config.log > https://www.math.ucdavis.edu/~anne/r-3.6.2.p0.log > https://www.math.ucdavis.edu/~anne/dochtml.log > > Thank you! > > Anne > > On Monday, May 25, 2020 at 1:29:33 AM UTC-7, Dima Pasechnik wrote: >> >> On Mon, May 25, 2020 at 7:44 AM Anne Schilling >> wrote: >> > >> > >> > >> > On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe wrote: >> >> >> >> Hi Anne, >> >> >> >> On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling wrote: >> >>> >> >>> Downloading the Sage mirror list >> >>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax >> error: error code: 1010 >> >>> Searching fastest mirror >> >>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror >> directly and no proxy set >> >> >> >> >> >> Here's a workaround: >> >> >> >> echo '["http://files.sagemath.org/;]' > upstream/mirror_list >> >> >> >> >> >> I hope this helps, >> >> Matthias >> > >> > >> > Thank you, that got me a lot further. But now it is stuck here: >> > >> > [matplotlib-2.2.5] running install_egg_info >> > [matplotlib-2.2.5] running egg_info >> > [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO >> > [matplotlib-2.2.5] writing dependency_links to >> lib/matplotlib.egg-info/dependency_links.txt >> > [matplotlib-2.2.5] writing namespace_packages to >> lib/matplotlib.egg-info/namespace_packages.txt >> > [matplotlib-2.2.5] writing requirements to >> lib/matplotlib.egg-info/requires.txt >> > [matplotlib-2.2.5] writing top-level names to >> lib/matplotlib.egg-info/top_level.txt >> > [matplotlib-2.2.5] reading manifest file >> 'lib/matplotlib.egg-info/SOURCES.txt' >> > [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' >> > [matplotlib-2.2.5] writing manifest file >> 'lib/matplotlib.egg-info/SOURCES.txt' >> > [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to >> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info >> >> > [matplotlib-2.2.5] Installing >> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7-nspkg.pth >> >> > [matplotlib-2.2.5] running install_scripts >> > [matplotlib-2.2.5] writing list of installed files to >> '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-record-rmt5izi9/install-record.txt' >> >> > [matplotlib-2.2.5] Running setup.py install for matplotlib: >> finished with status 'done' >> > [matplotlib-2.2.5] Removing source in >> /private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-build-l19fxrx8 >> >> > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 >> > [matplotlib-2.2.5] Cleaning up... >> > [matplotlib-2.2.5] Removed build tracker >> '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-tracker-rxz0bq3j' >> >> > [matplotlib-2.2.5] >> > [matplotlib-2.2.5] real6m10.218s >> > [matplotlib-2.2.5] user0m35.266s >> > [matplotlib-2.2.5] sys0m4.548s >> > [matplotlib-2.2.5] Copying package files from temporary location >> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst to >> /Applications/sage/local >> > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 >> > [matplotlib-2.2.5] Deleting temporary build directory >> > [matplotlib-2.2.5] >> /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5 >> > [matplotlib-2.2.5] Finished installing matplotlib-2.2.5.spkg >> > make[2]: *** [all-start] Error 2 >> > >> > real48m47.186s >> > user162m58.074s >> > sys27m3.413s >> > *** >> > Error building Sage. >> > >> > The following package(s) may have failed to build (not necessarily >> > during this run of 'make all-start'): >> > >> > * package: r-3.6.2.p0 >> > last build time: May 24 23:28 >> > log file:/Applications/sage/logs/pkgs/r-3.6.2.p0.log >> > build directory: >> /Applications/sage/local/var/tmp/sage/build/r-3.6.2.p0 >> > >> > * documentation: dochtml >> > last build time: May 24 22:43 >> > log file:/Applications/sage/logs/pkgs/../dochtml.log >> > >> > It is safe to delete any log files and build directories, but they >> > contain information that is helpful for debugging build problems. >> > WARNING: If you now
Re: [sage-devel] Re: trouble upgrading to latest stable version
Hi Dima, I pulled the changes using git in the master branch and started make (or make distclean). This is running on MacOS 10.12.6 . https://www.math.ucdavis.edu/~anne/config.log https://www.math.ucdavis.edu/~anne/r-3.6.2.p0.log https://www.math.ucdavis.edu/~anne/dochtml.log Thank you! Anne On Monday, May 25, 2020 at 1:29:33 AM UTC-7, Dima Pasechnik wrote: > > On Mon, May 25, 2020 at 7:44 AM Anne Schilling > > wrote: > > > > > > > > On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe wrote: > >> > >> Hi Anne, > >> > >> On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling wrote: > >>> > >>> Downloading the Sage mirror list > >>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax > error: error code: 1010 > >>> Searching fastest mirror > >>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror > directly and no proxy set > >> > >> > >> Here's a workaround: > >> > >> echo '["http://files.sagemath.org/;]' > upstream/mirror_list > >> > >> > >> I hope this helps, > >> Matthias > > > > > > Thank you, that got me a lot further. But now it is stuck here: > > > > [matplotlib-2.2.5] running install_egg_info > > [matplotlib-2.2.5] running egg_info > > [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO > > [matplotlib-2.2.5] writing dependency_links to > lib/matplotlib.egg-info/dependency_links.txt > > [matplotlib-2.2.5] writing namespace_packages to > lib/matplotlib.egg-info/namespace_packages.txt > > [matplotlib-2.2.5] writing requirements to > lib/matplotlib.egg-info/requires.txt > > [matplotlib-2.2.5] writing top-level names to > lib/matplotlib.egg-info/top_level.txt > > [matplotlib-2.2.5] reading manifest file > 'lib/matplotlib.egg-info/SOURCES.txt' > > [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' > > [matplotlib-2.2.5] writing manifest file > 'lib/matplotlib.egg-info/SOURCES.txt' > > [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info > > > > [matplotlib-2.2.5] Installing > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7-nspkg.pth > > > > [matplotlib-2.2.5] running install_scripts > > [matplotlib-2.2.5] writing list of installed files to > '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-record-rmt5izi9/install-record.txt' > > > > [matplotlib-2.2.5] Running setup.py install for matplotlib: finished > with status 'done' > > [matplotlib-2.2.5] Removing source in > /private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-build-l19fxrx8 > > > > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 > > [matplotlib-2.2.5] Cleaning up... > > [matplotlib-2.2.5] Removed build tracker > '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-tracker-rxz0bq3j' > > > > [matplotlib-2.2.5] > > [matplotlib-2.2.5] real6m10.218s > > [matplotlib-2.2.5] user0m35.266s > > [matplotlib-2.2.5] sys0m4.548s > > [matplotlib-2.2.5] Copying package files from temporary location > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst to > /Applications/sage/local > > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 > > [matplotlib-2.2.5] Deleting temporary build directory > > [matplotlib-2.2.5] > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5 > > [matplotlib-2.2.5] Finished installing matplotlib-2.2.5.spkg > > make[2]: *** [all-start] Error 2 > > > > real48m47.186s > > user162m58.074s > > sys27m3.413s > > *** > > Error building Sage. > > > > The following package(s) may have failed to build (not necessarily > > during this run of 'make all-start'): > > > > * package: r-3.6.2.p0 > > last build time: May 24 23:28 > > log file:/Applications/sage/logs/pkgs/r-3.6.2.p0.log > > build directory: > /Applications/sage/local/var/tmp/sage/build/r-3.6.2.p0 > > > > * documentation: dochtml > > last build time: May 24 22:43 > > log file:/Applications/sage/logs/pkgs/../dochtml.log > > > > It is safe to delete any log files and build directories, but they > > contain information that is helpful for debugging build problems. > > WARNING: If you now run 'make' again, the build directory of the > > same version of the package will, by default, be deleted. Set the > > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. > > > > make[1]: *** [all-start] Error 1 > > make: *** [all] Error 2 > > > > I can provide the log files if necessary. > > > > Are you building from scratch? > What is your setup? (Sage nowadays supports building with Homebrew > packages) > > Yes,
Re: [sage-devel] Re: trouble upgrading to latest stable version
On Mon, May 25, 2020 at 7:44 AM Anne Schilling wrote: > > > > On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe wrote: >> >> Hi Anne, >> >> On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling wrote: >>> >>> Downloading the Sage mirror list >>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax error: >>> error code: 1010 >>> Searching fastest mirror >>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror directly >>> and no proxy set >> >> >> Here's a workaround: >> >> echo '["http://files.sagemath.org/;]' > upstream/mirror_list >> >> >> I hope this helps, >> Matthias > > > Thank you, that got me a lot further. But now it is stuck here: > > [matplotlib-2.2.5] running install_egg_info > [matplotlib-2.2.5] running egg_info > [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO > [matplotlib-2.2.5] writing dependency_links to > lib/matplotlib.egg-info/dependency_links.txt > [matplotlib-2.2.5] writing namespace_packages to > lib/matplotlib.egg-info/namespace_packages.txt > [matplotlib-2.2.5] writing requirements to > lib/matplotlib.egg-info/requires.txt > [matplotlib-2.2.5] writing top-level names to > lib/matplotlib.egg-info/top_level.txt > [matplotlib-2.2.5] reading manifest file > 'lib/matplotlib.egg-info/SOURCES.txt' > [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' > [matplotlib-2.2.5] writing manifest file > 'lib/matplotlib.egg-info/SOURCES.txt' > [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info > [matplotlib-2.2.5] Installing > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7-nspkg.pth > [matplotlib-2.2.5] running install_scripts > [matplotlib-2.2.5] writing list of installed files to > '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-record-rmt5izi9/install-record.txt' > [matplotlib-2.2.5] Running setup.py install for matplotlib: finished with > status 'done' > [matplotlib-2.2.5] Removing source in > /private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-build-l19fxrx8 > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 > [matplotlib-2.2.5] Cleaning up... > [matplotlib-2.2.5] Removed build tracker > '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-tracker-rxz0bq3j' > [matplotlib-2.2.5] > [matplotlib-2.2.5] real6m10.218s > [matplotlib-2.2.5] user0m35.266s > [matplotlib-2.2.5] sys0m4.548s > [matplotlib-2.2.5] Copying package files from temporary location > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst to > /Applications/sage/local > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 > [matplotlib-2.2.5] Deleting temporary build directory > [matplotlib-2.2.5] > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5 > [matplotlib-2.2.5] Finished installing matplotlib-2.2.5.spkg > make[2]: *** [all-start] Error 2 > > real48m47.186s > user162m58.074s > sys27m3.413s > *** > Error building Sage. > > The following package(s) may have failed to build (not necessarily > during this run of 'make all-start'): > > * package: r-3.6.2.p0 > last build time: May 24 23:28 > log file:/Applications/sage/logs/pkgs/r-3.6.2.p0.log > build directory: /Applications/sage/local/var/tmp/sage/build/r-3.6.2.p0 > > * documentation: dochtml > last build time: May 24 22:43 > log file:/Applications/sage/logs/pkgs/../dochtml.log > > It is safe to delete any log files and build directories, but they > contain information that is helpful for debugging build problems. > WARNING: If you now run 'make' again, the build directory of the > same version of the package will, by default, be deleted. Set the > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. > > make[1]: *** [all-start] Error 1 > make: *** [all] Error 2 > > I can provide the log files if necessary. > Are you building from scratch? What is your setup? (Sage nowadays supports building with Homebrew packages) Yes, naturally, without the log files for R and dochtml one cannot say what went wrong. Also, the top-level config.log woud be useful. Best Dima > Best, > > Anne > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-devel/9c5525a4-9486-41f9-80f9-8c064fc3be5d%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this
Re: [sage-devel] Re: trouble upgrading to latest stable version
Dear Anne, I tried to compile the source code on Windows Subsystem for Linux (Ubuntu) and could not go through the compilation process. Then I installed Fedora 32 as a separate OS. I installed all the packages listed on the following website: https://doc.sagemath.org/html/en/installation/source.html#prerequisites Then I let my computer compile the source code at night, when I woke up it was compiled successfully. Hope this might help. Best wishes, Furkan. On Mon, May 25, 2020 at 9:44 AM Anne Schilling wrote: > > > On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe wrote: >> >> Hi Anne, >> >> On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling wrote: >>> >>> Downloading the Sage mirror list >>> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax >>> error: error code: 1010 >>> Searching fastest mirror >>> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror >>> directly and no proxy set >>> >> >> Here's a workaround: >> >> echo '["http://files.sagemath.org/;]' > upstream/mirror_list >> >> >> I hope this helps, >> Matthias >> > > Thank you, that got me a lot further. But now it is stuck here: > > [matplotlib-2.2.5] running install_egg_info > [matplotlib-2.2.5] running egg_info > [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO > [matplotlib-2.2.5] writing dependency_links to > lib/matplotlib.egg-info/dependency_links.txt > [matplotlib-2.2.5] writing namespace_packages to > lib/matplotlib.egg-info/namespace_packages.txt > [matplotlib-2.2.5] writing requirements to > lib/matplotlib.egg-info/requires.txt > [matplotlib-2.2.5] writing top-level names to > lib/matplotlib.egg-info/top_level.txt > [matplotlib-2.2.5] reading manifest file > 'lib/matplotlib.egg-info/SOURCES.txt' > [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' > [matplotlib-2.2.5] writing manifest file > 'lib/matplotlib.egg-info/SOURCES.txt' > [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info > [matplotlib-2.2.5] Installing > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7-nspkg.pth > [matplotlib-2.2.5] running install_scripts > [matplotlib-2.2.5] writing list of installed files to > '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-record-rmt5izi9/install-record.txt' > [matplotlib-2.2.5] Running setup.py install for matplotlib: finished > with status 'done' > [matplotlib-2.2.5] Removing source in > /private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-build-l19fxrx8 > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 > [matplotlib-2.2.5] Cleaning up... > [matplotlib-2.2.5] Removed build tracker > '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-tracker-rxz0bq3j' > [matplotlib-2.2.5] > [matplotlib-2.2.5] real6m10.218s > [matplotlib-2.2.5] user0m35.266s > [matplotlib-2.2.5] sys0m4.548s > [matplotlib-2.2.5] Copying package files from temporary location > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst to > /Applications/sage/local > [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 > [matplotlib-2.2.5] Deleting temporary build directory > [matplotlib-2.2.5] > /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5 > [matplotlib-2.2.5] Finished installing matplotlib-2.2.5.spkg > make[2]: *** [all-start] Error 2 > > real48m47.186s > user162m58.074s > sys27m3.413s > *** > Error building Sage. > > The following package(s) may have failed to build (not necessarily > during this run of 'make all-start'): > > * package: r-3.6.2.p0 > last build time: May 24 23:28 > log file:/Applications/sage/logs/pkgs/r-3.6.2.p0.log > build directory: /Applications/sage/local/var/tmp/sage/build/r-3.6.2.p0 > > * documentation: dochtml > last build time: May 24 22:43 > log file:/Applications/sage/logs/pkgs/../dochtml.log > > It is safe to delete any log files and build directories, but they > contain information that is helpful for debugging build problems. > WARNING: If you now run 'make' again, the build directory of the > same version of the package will, by default, be deleted. Set the > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. > > make[1]: *** [all-start] Error 1 > make: *** [all] Error 2 > > I can provide the log files if necessary. > > Best, > > Anne > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-devel+unsubscr...@googlegroups.com. > To view this discussion on the web visit >
[sage-devel] Re: trouble upgrading to latest stable version
On Sunday, May 24, 2020 at 10:27:19 PM UTC-7, Matthias Koeppe wrote: > > Hi Anne, > > On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling wrote: >> >> Downloading the Sage mirror list >> CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax error: >> error code: 1010 >> Searching fastest mirror >> ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror >> directly and no proxy set >> > > Here's a workaround: > > echo '["http://files.sagemath.org/;]' > upstream/mirror_list > > > I hope this helps, > Matthias > Thank you, that got me a lot further. But now it is stuck here: [matplotlib-2.2.5] running install_egg_info [matplotlib-2.2.5] running egg_info [matplotlib-2.2.5] writing lib/matplotlib.egg-info/PKG-INFO [matplotlib-2.2.5] writing dependency_links to lib/matplotlib.egg-info/dependency_links.txt [matplotlib-2.2.5] writing namespace_packages to lib/matplotlib.egg-info/namespace_packages.txt [matplotlib-2.2.5] writing requirements to lib/matplotlib.egg-info/requires.txt [matplotlib-2.2.5] writing top-level names to lib/matplotlib.egg-info/top_level.txt [matplotlib-2.2.5] reading manifest file 'lib/matplotlib.egg-info/SOURCES.txt' [matplotlib-2.2.5] reading manifest template 'MANIFEST.in' [matplotlib-2.2.5] writing manifest file 'lib/matplotlib.egg-info/SOURCES.txt' [matplotlib-2.2.5] Copying lib/matplotlib.egg-info to /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7.egg-info [matplotlib-2.2.5] Installing /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst/Applications/sage/local/lib/python3.7/site-packages/matplotlib-2.2.5-py3.7-nspkg.pth [matplotlib-2.2.5] running install_scripts [matplotlib-2.2.5] writing list of installed files to '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-record-rmt5izi9/install-record.txt' [matplotlib-2.2.5] Running setup.py install for matplotlib: finished with status 'done' [matplotlib-2.2.5] Removing source in /private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-build-l19fxrx8 [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 [matplotlib-2.2.5] Cleaning up... [matplotlib-2.2.5] Removed build tracker '/private/var/folders/sq/gx2hlzhj315g48j_8r39s8p8gp/T/pip-req-tracker-rxz0bq3j' [matplotlib-2.2.5] [matplotlib-2.2.5] real6m10.218s [matplotlib-2.2.5] user0m35.266s [matplotlib-2.2.5] sys0m4.548s [matplotlib-2.2.5] Copying package files from temporary location /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5/inst to /Applications/sage/local [matplotlib-2.2.5] Successfully installed matplotlib-2.2.5 [matplotlib-2.2.5] Deleting temporary build directory [matplotlib-2.2.5] /Applications/sage/local/var/tmp/sage/build/matplotlib-2.2.5 [matplotlib-2.2.5] Finished installing matplotlib-2.2.5.spkg make[2]: *** [all-start] Error 2 real48m47.186s user162m58.074s sys27m3.413s *** Error building Sage. The following package(s) may have failed to build (not necessarily during this run of 'make all-start'): * package: r-3.6.2.p0 last build time: May 24 23:28 log file:/Applications/sage/logs/pkgs/r-3.6.2.p0.log build directory: /Applications/sage/local/var/tmp/sage/build/r-3.6.2.p0 * documentation: dochtml last build time: May 24 22:43 log file:/Applications/sage/logs/pkgs/../dochtml.log It is safe to delete any log files and build directories, but they contain information that is helpful for debugging build problems. WARNING: If you now run 'make' again, the build directory of the same version of the package will, by default, be deleted. Set the environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. make[1]: *** [all-start] Error 1 make: *** [all] Error 2 I can provide the log files if necessary. Best, Anne -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/9c5525a4-9486-41f9-80f9-8c064fc3be5d%40googlegroups.com.
[sage-devel] Re: trouble upgrading to latest stable version
Hi Anne, On Sunday, May 24, 2020 at 9:40:42 PM UTC-7, Anne Schilling wrote: > > Downloading the Sage mirror list > CRITICAL [mirror_list|_load:91]: Downloaded mirror list has syntax error: > error code: 1010 > Searching fastest mirror > ERROR [mirror_list|_rank_mirrors:145]: Could not reach any mirror directly > and no proxy set > Here's a workaround: echo '["http://files.sagemath.org/;]' > upstream/mirror_list I hope this helps, Matthias -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/7c3cde30-5dbd-4f03-b611-b3eb46119f80%40googlegroups.com.
