Re: [sage-release] Re: Sage 9.5.rc1 released

[Matthias Köppe]

Regarding the iml build failure, could you run "otool -lL 
/usr/local/opt/openblas/lib/libopenblas.0.dylib " please


On Sunday, January 16, 2022 at 6:46:59 PM UTC-8 list...@gmail.com wrote:

>
> Yes, of course.
>
> I have restarted the whole process again (modifying and sourcing  
> .homebrew-build-env), and it does not go further than iml:
>
> * package: iml-1.0.4p1.p2
>
>   last build time: Jan 17 03:43
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2
> On Mon, 17 Jan 2022 at 03:24, Matthias Köppe  wrote:
>
>> Did you use ". .homebrew-build-env" before the latest build?
>>
>> On Sunday, January 16, 2022 at 5:30:12 PM UTC-8 list...@gmail.com wrote:
>>
>>>
>>> Here is what I have done.
>>>
>>> $ brew uninstall openblas
>>>
>>> Error: Refusing to uninstall /opt/homebrew/Cellar/openblas/0.3.19
>>>
>>> because it is required by arpack, cbc, cgl, clp, coinutils, igraph, osi, 
>>> r and suite-sparse, which are currently installed.
>>>
>>> You can override this and force removal with:
>>>
>>>   brew uninstall --ignore-dependencies openblas
>>>
>>> $ brew uninstall --ignore-dependencies openblas
>>>
>>> Uninstalling /opt/homebrew/Cellar/openblas/0.3.19... (23 files, 51.9MB)
>>>
>>> $ brew install openblas
>>>
>>> ==> *Auto-updated Homebrew!*
>>>
>>> Updated 1 tap (homebrew/core).
>>>
>>> ==> *Updated Formulae*
>>>
>>> Updated 10 formulae.
>>>
>>> Running `brew update --preinstall`...
>>>
>>>
>>> ==> *Downloading 
>>> https://ghcr.io/v2/homebrew/core/openblas/manifests/0.3.19 
>>> *
>>>
>>> Already downloaded: 
>>> /Users/gms/Library/Caches/Homebrew/downloads/b47e3d834a9c52d0772b21372a675e3496a8480baa2f3e9b72d60def08682c3f--openblas-0.3.19.bottle_manifest.json
>>>
>>> ==> *Downloading 
>>> https://ghcr.io/v2/homebrew/core/openblas/blobs/sha256:33e6385102e69ddd716d8eb818861e2e2e2c08de20e06d189ffd69115131ed03
>>>  
>>> *
>>>
>>> Already downloaded: 
>>> /Users/gms/Library/Caches/Homebrew/downloads/82003eb6c8dd0091f8465e8203b39d67e81d7db4c9e4d790e71f6b2e8445ab3f--openblas--0.3.19.arm64_big_sur.bottle.tar.gz
>>>
>>> ==> *Pouring openblas--0.3.19.arm64_big_sur.bottle.tar.gz*
>>>
>>> ==> *Caveats*
>>>
>>> openblas is keg-only, which means it was not symlinked into 
>>> /opt/homebrew,
>>>
>>> because macOS provides BLAS in Accelerate.framework.
>>>
>>>
>>> For compilers to find openblas you may need to set:
>>>
>>>   export LDFLAGS="-L/opt/homebrew/opt/openblas/lib"
>>>
>>>   export CPPFLAGS="-I/opt/homebrew/opt/openblas/include"
>>>
>>>
>>> For pkg-config to find openblas you may need to set:
>>>
>>>   export PKG_CONFIG_PATH="/opt/homebrew/opt/openblas/lib/pkgconfig"
>>>
>>>
>>> ==> *Summary*
>>>
>>>   /opt/homebrew/Cellar/openblas/0.3.19: 23 files, 51.9MB
>>>
>>> ==> *Running `brew cleanup openblas`...*
>>>
>>> Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP.
>>>
>>> Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
>>>
>>> $ 
>>>
>>> then the modification for .homebrew-build-env, followed by make -k.
>>>
>>> And now the only remaining problem is openblas:
>>>
>>> * package: openblas-0.3.18
>>>
>>>   last build time: Jan 17 02:24
>>>
>>>   log file:
>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log
>>>
>>>   build directory: 
>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18
>>>
>>> Logs attached (sorry for the wrong log before).  The one for openblas is 
>>> zipped as it is too large.
>>>
>>> On Mon, 17 Jan 2022 at 00:34, Matthias Köppe  
>>> wrote:
>>>
 Also worth checking whether "brew install openblas" installs something 
 new
 (see messages at the end of the configure run)

 On Sunday, January 16, 2022 at 2:34:48 PM UTC-8 Matthias Köppe wrote:

> There is no error in the zn_poly log file; but could you post the 
> openblas log file please?
>
> On Sunday, January 16, 2022 at 2:17:38 PM UTC-8 Matthias Köppe wrote:
>
>> Thanks for testing and posting the logs. I'll dissect the logs at 
>> https://trac.sagemath.org/ticket/30592
>>
>>
>> On Sunday, January 16, 2022 at 1:06:58 PM UTC-8 list...@gmail.com 
>> wrote:
>>
>>>
>>> I started afresh (delete sage-9.5.rc1, untar, etc.)
>>>
>>> make -k gives
>>>
>>> The following package(s) may have failed to build (not necessarily
>>>
>>> during this run of 'make tachyon'):
>>>
>>>
>>> * package: primecountpy-0.1.0
>>>
>>>   last build time: Jan 16 21:55
>>>
>>>   log file:
>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/primecountpy-0.1.0.log
>>>
>>>
>>> * package: libhomfly-1.02r6
>>>
>>>   last build time: Jan 

Re: [sage-release] Re: Sage 9.5.rc1 released

[Matthias Köppe]

The latest config.log now shows "will use system package and not install 
SPKG openblas", so there's progress.

I'll take the new version of the iml log to 
https://trac.sagemath.org/ticket/30592
On Sunday, January 16, 2022 at 6:46:59 PM UTC-8 list...@gmail.com wrote:

>
> Yes, of course.
>
> I have restarted the whole process again (modifying and sourcing  
> .homebrew-build-env), and it does not go further than iml:
>
> * package: iml-1.0.4p1.p2
>
>   last build time: Jan 17 03:43
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2
> On Mon, 17 Jan 2022 at 03:24, Matthias Köppe  wrote:
>
>> Did you use ". .homebrew-build-env" before the latest build?
>>
>> On Sunday, January 16, 2022 at 5:30:12 PM UTC-8 list...@gmail.com wrote:
>>
>>>
>>> Here is what I have done.
>>>
>>> $ brew uninstall openblas
>>>
>>> Error: Refusing to uninstall /opt/homebrew/Cellar/openblas/0.3.19
>>>
>>> because it is required by arpack, cbc, cgl, clp, coinutils, igraph, osi, 
>>> r and suite-sparse, which are currently installed.
>>>
>>> You can override this and force removal with:
>>>
>>>   brew uninstall --ignore-dependencies openblas
>>>
>>> $ brew uninstall --ignore-dependencies openblas
>>>
>>> Uninstalling /opt/homebrew/Cellar/openblas/0.3.19... (23 files, 51.9MB)
>>>
>>> $ brew install openblas
>>>
>>> ==> *Auto-updated Homebrew!*
>>>
>>> Updated 1 tap (homebrew/core).
>>>
>>> ==> *Updated Formulae*
>>>
>>> Updated 10 formulae.
>>>
>>> Running `brew update --preinstall`...
>>>
>>>
>>> ==> *Downloading 
>>> https://ghcr.io/v2/homebrew/core/openblas/manifests/0.3.19 
>>> *
>>>
>>> Already downloaded: 
>>> /Users/gms/Library/Caches/Homebrew/downloads/b47e3d834a9c52d0772b21372a675e3496a8480baa2f3e9b72d60def08682c3f--openblas-0.3.19.bottle_manifest.json
>>>
>>> ==> *Downloading 
>>> https://ghcr.io/v2/homebrew/core/openblas/blobs/sha256:33e6385102e69ddd716d8eb818861e2e2e2c08de20e06d189ffd69115131ed03
>>>  
>>> *
>>>
>>> Already downloaded: 
>>> /Users/gms/Library/Caches/Homebrew/downloads/82003eb6c8dd0091f8465e8203b39d67e81d7db4c9e4d790e71f6b2e8445ab3f--openblas--0.3.19.arm64_big_sur.bottle.tar.gz
>>>
>>> ==> *Pouring openblas--0.3.19.arm64_big_sur.bottle.tar.gz*
>>>
>>> ==> *Caveats*
>>>
>>> openblas is keg-only, which means it was not symlinked into 
>>> /opt/homebrew,
>>>
>>> because macOS provides BLAS in Accelerate.framework.
>>>
>>>
>>> For compilers to find openblas you may need to set:
>>>
>>>   export LDFLAGS="-L/opt/homebrew/opt/openblas/lib"
>>>
>>>   export CPPFLAGS="-I/opt/homebrew/opt/openblas/include"
>>>
>>>
>>> For pkg-config to find openblas you may need to set:
>>>
>>>   export PKG_CONFIG_PATH="/opt/homebrew/opt/openblas/lib/pkgconfig"
>>>
>>>
>>> ==> *Summary*
>>>
>>>   /opt/homebrew/Cellar/openblas/0.3.19: 23 files, 51.9MB
>>>
>>> ==> *Running `brew cleanup openblas`...*
>>>
>>> Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP.
>>>
>>> Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
>>>
>>> $ 
>>>
>>> then the modification for .homebrew-build-env, followed by make -k.
>>>
>>> And now the only remaining problem is openblas:
>>>
>>> * package: openblas-0.3.18
>>>
>>>   last build time: Jan 17 02:24
>>>
>>>   log file:
>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log
>>>
>>>   build directory: 
>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18
>>>
>>> Logs attached (sorry for the wrong log before).  The one for openblas is 
>>> zipped as it is too large.
>>>
>>> On Mon, 17 Jan 2022 at 00:34, Matthias Köppe  
>>> wrote:
>>>
 Also worth checking whether "brew install openblas" installs something 
 new
 (see messages at the end of the configure run)

 On Sunday, January 16, 2022 at 2:34:48 PM UTC-8 Matthias Köppe wrote:

> There is no error in the zn_poly log file; but could you post the 
> openblas log file please?
>
> On Sunday, January 16, 2022 at 2:17:38 PM UTC-8 Matthias Köppe wrote:
>
>> Thanks for testing and posting the logs. I'll dissect the logs at 
>> https://trac.sagemath.org/ticket/30592
>>
>>
>> On Sunday, January 16, 2022 at 1:06:58 PM UTC-8 list...@gmail.com 
>> wrote:
>>
>>>
>>> I started afresh (delete sage-9.5.rc1, untar, etc.)
>>>
>>> make -k gives
>>>
>>> The following package(s) may have failed to build (not necessarily
>>>
>>> during this run of 'make tachyon'):
>>>
>>>
>>> * package: primecountpy-0.1.0
>>>
>>>   last build time: Jan 16 21:55
>>>
>>>   log file:
>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/primecountpy-0.1.0.log
>>>
>>>

Re: [sage-release] Re: Sage 9.5.rc1 released

[Matthias Köppe]

Did you use ". .homebrew-build-env" before the latest build?

On Sunday, January 16, 2022 at 5:30:12 PM UTC-8 list...@gmail.com wrote:

>
> Here is what I have done.
>
> $ brew uninstall openblas
>
> Error: Refusing to uninstall /opt/homebrew/Cellar/openblas/0.3.19
>
> because it is required by arpack, cbc, cgl, clp, coinutils, igraph, osi, r 
> and suite-sparse, which are currently installed.
>
> You can override this and force removal with:
>
>   brew uninstall --ignore-dependencies openblas
>
> $ brew uninstall --ignore-dependencies openblas
>
> Uninstalling /opt/homebrew/Cellar/openblas/0.3.19... (23 files, 51.9MB)
>
> $ brew install openblas
>
> ==> *Auto-updated Homebrew!*
>
> Updated 1 tap (homebrew/core).
>
> ==> *Updated Formulae*
>
> Updated 10 formulae.
>
> Running `brew update --preinstall`...
>
>
> ==> *Downloading 
> https://ghcr.io/v2/homebrew/core/openblas/manifests/0.3.19 
> *
>
> Already downloaded: 
> /Users/gms/Library/Caches/Homebrew/downloads/b47e3d834a9c52d0772b21372a675e3496a8480baa2f3e9b72d60def08682c3f--openblas-0.3.19.bottle_manifest.json
>
> ==> *Downloading 
> https://ghcr.io/v2/homebrew/core/openblas/blobs/sha256:33e6385102e69ddd716d8eb818861e2e2e2c08de20e06d189ffd69115131ed03
>  
> *
>
> Already downloaded: 
> /Users/gms/Library/Caches/Homebrew/downloads/82003eb6c8dd0091f8465e8203b39d67e81d7db4c9e4d790e71f6b2e8445ab3f--openblas--0.3.19.arm64_big_sur.bottle.tar.gz
>
> ==> *Pouring openblas--0.3.19.arm64_big_sur.bottle.tar.gz*
>
> ==> *Caveats*
>
> openblas is keg-only, which means it was not symlinked into /opt/homebrew,
>
> because macOS provides BLAS in Accelerate.framework.
>
>
> For compilers to find openblas you may need to set:
>
>   export LDFLAGS="-L/opt/homebrew/opt/openblas/lib"
>
>   export CPPFLAGS="-I/opt/homebrew/opt/openblas/include"
>
>
> For pkg-config to find openblas you may need to set:
>
>   export PKG_CONFIG_PATH="/opt/homebrew/opt/openblas/lib/pkgconfig"
>
>
> ==> *Summary*
>
>   /opt/homebrew/Cellar/openblas/0.3.19: 23 files, 51.9MB
>
> ==> *Running `brew cleanup openblas`...*
>
> Disable this behaviour by setting HOMEBREW_NO_INSTALL_CLEANUP.
>
> Hide these hints with HOMEBREW_NO_ENV_HINTS (see `man brew`).
>
> $ 
>
> then the modification for .homebrew-build-env, followed by make -k.
>
> And now the only remaining problem is openblas:
>
> * package: openblas-0.3.18
>
>   last build time: Jan 17 02:24
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18
>
> Logs attached (sorry for the wrong log before).  The one for openblas is 
> zipped as it is too large.
>
> On Mon, 17 Jan 2022 at 00:34, Matthias Köppe  wrote:
>
>> Also worth checking whether "brew install openblas" installs something new
>> (see messages at the end of the configure run)
>>
>> On Sunday, January 16, 2022 at 2:34:48 PM UTC-8 Matthias Köppe wrote:
>>
>>> There is no error in the zn_poly log file; but could you post the 
>>> openblas log file please?
>>>
>>> On Sunday, January 16, 2022 at 2:17:38 PM UTC-8 Matthias Köppe wrote:
>>>
 Thanks for testing and posting the logs. I'll dissect the logs at 
 https://trac.sagemath.org/ticket/30592


 On Sunday, January 16, 2022 at 1:06:58 PM UTC-8 list...@gmail.com 
 wrote:

>
> I started afresh (delete sage-9.5.rc1, untar, etc.)
>
> make -k gives
>
> The following package(s) may have failed to build (not necessarily
>
> during this run of 'make tachyon'):
>
>
> * package: primecountpy-0.1.0
>
>   last build time: Jan 16 21:55
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/primecountpy-0.1.0.log
>
>
> * package: libhomfly-1.02r6
>
>   last build time: Jan 16 21:55
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/libhomfly-1.02r6.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/libhomfly-1.02r6
>
>
> * package: m4ri-20200115
>
>   last build time: Jan 16 21:55
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/m4ri-20200115.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/m4ri-20200115
>
>
> * package: openblas-0.3.18
>
>   last build time: Jan 16 21:58
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18
>
>
> * package: tachyon-0.98.9.p7
>
>   last build time: Jan 16 21:59
>
>   log file:
> 

Re: [sage-release] Re: Sage 9.5.rc1 released

[Matthias Köppe]

Also worth checking whether "brew install openblas" installs something new
(see messages at the end of the configure run)

On Sunday, January 16, 2022 at 2:34:48 PM UTC-8 Matthias Köppe wrote:

> There is no error in the zn_poly log file; but could you post the openblas 
> log file please?
>
> On Sunday, January 16, 2022 at 2:17:38 PM UTC-8 Matthias Köppe wrote:
>
>> Thanks for testing and posting the logs. I'll dissect the logs at 
>> https://trac.sagemath.org/ticket/30592
>>
>>
>> On Sunday, January 16, 2022 at 1:06:58 PM UTC-8 list...@gmail.com wrote:
>>
>>>
>>> I started afresh (delete sage-9.5.rc1, untar, etc.)
>>>
>>> make -k gives
>>>
>>> The following package(s) may have failed to build (not necessarily
>>>
>>> during this run of 'make tachyon'):
>>>
>>>
>>> * package: primecountpy-0.1.0
>>>
>>>   last build time: Jan 16 21:55
>>>
>>>   log file:
>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/primecountpy-0.1.0.log
>>>
>>>
>>> * package: libhomfly-1.02r6
>>>
>>>   last build time: Jan 16 21:55
>>>
>>>   log file:
>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/libhomfly-1.02r6.log
>>>
>>>   build directory: 
>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/libhomfly-1.02r6
>>>
>>>
>>> * package: m4ri-20200115
>>>
>>>   last build time: Jan 16 21:55
>>>
>>>   log file:
>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/m4ri-20200115.log
>>>
>>>   build directory: 
>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/m4ri-20200115
>>>
>>>
>>> * package: openblas-0.3.18
>>>
>>>   last build time: Jan 16 21:58
>>>
>>>   log file:
>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log
>>>
>>>   build directory: 
>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18
>>>
>>>
>>> * package: tachyon-0.98.9.p7
>>>
>>>   last build time: Jan 16 21:59
>>>
>>>   log file:
>>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/tachyon-0.98.9.p7.log
>>>
>>>   build directory: 
>>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/tachyon-0.98.9.p7
>>>
>>> Logs attached.
>>>
>>> On Sun, 16 Jan 2022 at 18:25, G. M.-S.  wrote:
>>>

 Here it is. Before:

 $ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/*

 -rw-r--r--  1 gms  staff  13933 Jan 16 11:08 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h

 -rw-r--r--  1 gms  staff  14714 Jan 16 11:08 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h

 -rw-r--r--  1 gms  staff   4726 Jan 16 11:08 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h

 -rw-r--r--  1 gms  staff   4947 Jan 16 11:08 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h

 -rw-r--r--  1 gms  staff  10953 Jan 16 11:08 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h

 -rw-r--r--  1 gms  staff  11307 Jan 16 11:08 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h

 -rw-r--r--  1 gms  staff   1373 Jan 16 11:08 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h

 -rw-r--r--  1 gms  staff609 Jan 16 11:08 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h

 $ 
 and after make cddlib-clean cddlib:

 $ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/*

 -rw-r--r--  1 gms  staff  13933 Jan 16 18:21 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h

 -rw-r--r--  1 gms  staff  14714 Jan 16 18:21 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h

 -rw-r--r--  1 gms  staff   4726 Jan 16 18:21 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h

 -rw-r--r--  1 gms  staff   4947 Jan 16 18:21 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h

 -rw-r--r--  1 gms  staff  10953 Jan 16 18:21 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h

 -rw-r--r--  1 gms  staff  11307 Jan 16 18:21 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h

 -rw-r--r--  1 gms  staff   1373 Jan 16 18:21 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h

 -rw-r--r--  1 gms  staff609 Jan 16 18:21 
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h

 $ 

 Logs attached.

 Trying to make again, will report.

 On Sun, 16 Jan 2022 at 18:12, Matthias Köppe  
 wrote:

> From singularlog:
>
> In file included from bbfan.cc:17:
> In file included from ./gfan.h:18:
> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h:26:10: fatal 
> error: 'cdd_f.h' file not found
> #include "cdd_f.h"
>  ^
> 1 error generated.
> make[10]: *** [gfanlib_la-bbfan.lo] Error 1
>
> This is very strange. Could you (1) check what's in 
> local/include/cddlib/ and (2) reinstall cddlib using "make cddlib-clean 
> cddlib"?
>
>
> On Sunday, 

Re: [sage-release] Re: Sage 9.5.rc1 released

[Matthias Köppe]

I have a possible fix for these at https://trac.sagemath.org/ticket/33191; 
to test without git, just make the changes shown 
in 
https://git.sagemath.org/sage.git/diff?id2=f9b2db94f675ff16963ccdefba4f1a3393b3fe0d=aee855a78b42ab4b726995a9e22f23e3bec08b8b
 
to the file .homebrew-build-env and then source this file again

On Sunday, January 16, 2022 at 1:06:58 PM UTC-8 list...@gmail.com wrote:

>
> I started afresh (delete sage-9.5.rc1, untar, etc.)
>
> make -k gives
>
> The following package(s) may have failed to build (not necessarily
>
> during this run of 'make tachyon'):
>
>
> * package: primecountpy-0.1.0
>
>   last build time: Jan 16 21:55
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/primecountpy-0.1.0.log
>
>
> * package: libhomfly-1.02r6
>
>   last build time: Jan 16 21:55
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/libhomfly-1.02r6.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/libhomfly-1.02r6
>
>
> * package: m4ri-20200115
>
>   last build time: Jan 16 21:55
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/m4ri-20200115.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/m4ri-20200115
>
>
> * package: openblas-0.3.18
>
>   last build time: Jan 16 21:58
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18
>
>
> * package: tachyon-0.98.9.p7
>
>   last build time: Jan 16 21:59
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/tachyon-0.98.9.p7.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/tachyon-0.98.9.p7
>
> Logs attached.
>
> On Sun, 16 Jan 2022 at 18:25, G. M.-S.  wrote:
>
>>
>> Here it is. Before:
>>
>> $ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/*
>>
>> -rw-r--r--  1 gms  staff  13933 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h
>>
>> -rw-r--r--  1 gms  staff  14714 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h
>>
>> -rw-r--r--  1 gms  staff   4726 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h
>>
>> -rw-r--r--  1 gms  staff   4947 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h
>>
>> -rw-r--r--  1 gms  staff  10953 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h
>>
>> -rw-r--r--  1 gms  staff  11307 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h
>>
>> -rw-r--r--  1 gms  staff   1373 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h
>>
>> -rw-r--r--  1 gms  staff609 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h
>>
>> $ 
>> and after make cddlib-clean cddlib:
>>
>> $ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/*
>>
>> -rw-r--r--  1 gms  staff  13933 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h
>>
>> -rw-r--r--  1 gms  staff  14714 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h
>>
>> -rw-r--r--  1 gms  staff   4726 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h
>>
>> -rw-r--r--  1 gms  staff   4947 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h
>>
>> -rw-r--r--  1 gms  staff  10953 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h
>>
>> -rw-r--r--  1 gms  staff  11307 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h
>>
>> -rw-r--r--  1 gms  staff   1373 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h
>>
>> -rw-r--r--  1 gms  staff609 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h
>>
>> $ 
>>
>> Logs attached.
>>
>> Trying to make again, will report.
>>
>> On Sun, 16 Jan 2022 at 18:12, Matthias Köppe  
>> wrote:
>>
>>> From singularlog:
>>>
>>> In file included from bbfan.cc:17:
>>> In file included from ./gfan.h:18:
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h:26:10: fatal 
>>> error: 'cdd_f.h' file not found
>>> #include "cdd_f.h"
>>>  ^
>>> 1 error generated.
>>> make[10]: *** [gfanlib_la-bbfan.lo] Error 1
>>>
>>> This is very strange. Could you (1) check what's in 
>>> local/include/cddlib/ and (2) reinstall cddlib using "make cddlib-clean 
>>> cddlib"?
>>>
>>>
>>> On Sunday, January 16, 2022 at 2:17:58 AM UTC-8 list...@gmail.com wrote:
>>>

 There was no /usr/local/opt.
 I eliminated all references to /usr/local/opt in .bash_profile.
 Uninstalled homebrew and reinstalled it.

 I get

 make[2]: *** [all-start] Error 2


 real 4m27.295s

 user 12m14.754s

 sys 3m20.702s

 ***

 Error building Sage.

Re: [sage-release] Re: Sage 9.5.rc1 released

[Matthias Köppe]

There is no error in the zn_poly log file; but could you post the openblas 
log file please?

On Sunday, January 16, 2022 at 2:17:38 PM UTC-8 Matthias Köppe wrote:

> Thanks for testing and posting the logs. I'll dissect the logs at 
> https://trac.sagemath.org/ticket/30592
>
>
> On Sunday, January 16, 2022 at 1:06:58 PM UTC-8 list...@gmail.com wrote:
>
>>
>> I started afresh (delete sage-9.5.rc1, untar, etc.)
>>
>> make -k gives
>>
>> The following package(s) may have failed to build (not necessarily
>>
>> during this run of 'make tachyon'):
>>
>>
>> * package: primecountpy-0.1.0
>>
>>   last build time: Jan 16 21:55
>>
>>   log file:
>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/primecountpy-0.1.0.log
>>
>>
>> * package: libhomfly-1.02r6
>>
>>   last build time: Jan 16 21:55
>>
>>   log file:
>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/libhomfly-1.02r6.log
>>
>>   build directory: 
>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/libhomfly-1.02r6
>>
>>
>> * package: m4ri-20200115
>>
>>   last build time: Jan 16 21:55
>>
>>   log file:
>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/m4ri-20200115.log
>>
>>   build directory: 
>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/m4ri-20200115
>>
>>
>> * package: openblas-0.3.18
>>
>>   last build time: Jan 16 21:58
>>
>>   log file:
>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log
>>
>>   build directory: 
>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18
>>
>>
>> * package: tachyon-0.98.9.p7
>>
>>   last build time: Jan 16 21:59
>>
>>   log file:
>> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/tachyon-0.98.9.p7.log
>>
>>   build directory: 
>> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/tachyon-0.98.9.p7
>>
>> Logs attached.
>>
>> On Sun, 16 Jan 2022 at 18:25, G. M.-S.  wrote:
>>
>>>
>>> Here it is. Before:
>>>
>>> $ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/*
>>>
>>> -rw-r--r--  1 gms  staff  13933 Jan 16 11:08 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h
>>>
>>> -rw-r--r--  1 gms  staff  14714 Jan 16 11:08 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h
>>>
>>> -rw-r--r--  1 gms  staff   4726 Jan 16 11:08 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h
>>>
>>> -rw-r--r--  1 gms  staff   4947 Jan 16 11:08 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h
>>>
>>> -rw-r--r--  1 gms  staff  10953 Jan 16 11:08 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h
>>>
>>> -rw-r--r--  1 gms  staff  11307 Jan 16 11:08 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h
>>>
>>> -rw-r--r--  1 gms  staff   1373 Jan 16 11:08 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h
>>>
>>> -rw-r--r--  1 gms  staff609 Jan 16 11:08 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h
>>>
>>> $ 
>>> and after make cddlib-clean cddlib:
>>>
>>> $ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/*
>>>
>>> -rw-r--r--  1 gms  staff  13933 Jan 16 18:21 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h
>>>
>>> -rw-r--r--  1 gms  staff  14714 Jan 16 18:21 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h
>>>
>>> -rw-r--r--  1 gms  staff   4726 Jan 16 18:21 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h
>>>
>>> -rw-r--r--  1 gms  staff   4947 Jan 16 18:21 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h
>>>
>>> -rw-r--r--  1 gms  staff  10953 Jan 16 18:21 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h
>>>
>>> -rw-r--r--  1 gms  staff  11307 Jan 16 18:21 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h
>>>
>>> -rw-r--r--  1 gms  staff   1373 Jan 16 18:21 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h
>>>
>>> -rw-r--r--  1 gms  staff609 Jan 16 18:21 
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h
>>>
>>> $ 
>>>
>>> Logs attached.
>>>
>>> Trying to make again, will report.
>>>
>>> On Sun, 16 Jan 2022 at 18:12, Matthias Köppe  
>>> wrote:
>>>
 From singularlog:

 In file included from bbfan.cc:17:
 In file included from ./gfan.h:18:
 /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h:26:10: fatal 
 error: 'cdd_f.h' file not found
 #include "cdd_f.h"
  ^
 1 error generated.
 make[10]: *** [gfanlib_la-bbfan.lo] Error 1

 This is very strange. Could you (1) check what's in 
 local/include/cddlib/ and (2) reinstall cddlib using "make cddlib-clean 
 cddlib"?


 On Sunday, January 16, 2022 at 2:17:58 AM UTC-8 list...@gmail.com 
 wrote:

>
> There was no /usr/local/opt.
> I eliminated all references to /usr/local/opt in .bash_profile.
> Uninstalled homebrew and reinstalled it.
>
> I get
>
> make[2]: *** [all-start] Error 2
>
>
> real 4m27.295s
>
> user 12m14.754s

Re: [sage-release] Re: Sage 9.5.rc1 released

[Matthias Köppe]

Thanks for testing and posting the logs. I'll dissect the logs 
at https://trac.sagemath.org/ticket/30592


On Sunday, January 16, 2022 at 1:06:58 PM UTC-8 list...@gmail.com wrote:

>
> I started afresh (delete sage-9.5.rc1, untar, etc.)
>
> make -k gives
>
> The following package(s) may have failed to build (not necessarily
>
> during this run of 'make tachyon'):
>
>
> * package: primecountpy-0.1.0
>
>   last build time: Jan 16 21:55
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/primecountpy-0.1.0.log
>
>
> * package: libhomfly-1.02r6
>
>   last build time: Jan 16 21:55
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/libhomfly-1.02r6.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/libhomfly-1.02r6
>
>
> * package: m4ri-20200115
>
>   last build time: Jan 16 21:55
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/m4ri-20200115.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/m4ri-20200115
>
>
> * package: openblas-0.3.18
>
>   last build time: Jan 16 21:58
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/openblas-0.3.18.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/openblas-0.3.18
>
>
> * package: tachyon-0.98.9.p7
>
>   last build time: Jan 16 21:59
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/tachyon-0.98.9.p7.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/tachyon-0.98.9.p7
>
> Logs attached.
>
> On Sun, 16 Jan 2022 at 18:25, G. M.-S.  wrote:
>
>>
>> Here it is. Before:
>>
>> $ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/*
>>
>> -rw-r--r--  1 gms  staff  13933 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h
>>
>> -rw-r--r--  1 gms  staff  14714 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h
>>
>> -rw-r--r--  1 gms  staff   4726 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h
>>
>> -rw-r--r--  1 gms  staff   4947 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h
>>
>> -rw-r--r--  1 gms  staff  10953 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h
>>
>> -rw-r--r--  1 gms  staff  11307 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h
>>
>> -rw-r--r--  1 gms  staff   1373 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h
>>
>> -rw-r--r--  1 gms  staff609 Jan 16 11:08 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h
>>
>> $ 
>> and after make cddlib-clean cddlib:
>>
>> $ ls -al ~/sage/sage-9.5.rc1/local/include/cddlib/*
>>
>> -rw-r--r--  1 gms  staff  13933 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h
>>
>> -rw-r--r--  1 gms  staff  14714 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd_f.h
>>
>> -rw-r--r--  1 gms  staff   4726 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp.h
>>
>> -rw-r--r--  1 gms  staff   4947 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddmp_f.h
>>
>> -rw-r--r--  1 gms  staff  10953 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes.h
>>
>> -rw-r--r--  1 gms  staff  11307 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cddtypes_f.h
>>
>> -rw-r--r--  1 gms  staff   1373 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/setoper.h
>>
>> -rw-r--r--  1 gms  staff609 Jan 16 18:21 
>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/splitmix64.h
>>
>> $ 
>>
>> Logs attached.
>>
>> Trying to make again, will report.
>>
>> On Sun, 16 Jan 2022 at 18:12, Matthias Köppe  
>> wrote:
>>
>>> From singularlog:
>>>
>>> In file included from bbfan.cc:17:
>>> In file included from ./gfan.h:18:
>>> /Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h:26:10: fatal 
>>> error: 'cdd_f.h' file not found
>>> #include "cdd_f.h"
>>>  ^
>>> 1 error generated.
>>> make[10]: *** [gfanlib_la-bbfan.lo] Error 1
>>>
>>> This is very strange. Could you (1) check what's in 
>>> local/include/cddlib/ and (2) reinstall cddlib using "make cddlib-clean 
>>> cddlib"?
>>>
>>>
>>> On Sunday, January 16, 2022 at 2:17:58 AM UTC-8 list...@gmail.com wrote:
>>>

 There was no /usr/local/opt.
 I eliminated all references to /usr/local/opt in .bash_profile.
 Uninstalled homebrew and reinstalled it.

 I get

 make[2]: *** [all-start] Error 2


 real 4m27.295s

 user 12m14.754s

 sys 3m20.702s

 ***

 Error building Sage.


 The following package(s) may have failed to build (not necessarily

 during this run of 'make all-start'):


 * package: iml-1.0.4p1.p2

   last build time: Jan 16 

[sage-release] Re: Sage 9.5.rc2 release

[Matthias Köppe]

The sqlite doctest failure is tracked 
at https://trac.sagemath.org/ticket/29092

On Sunday, January 16, 2022 at 1:42:06 PM UTC-8 jonatha...@googlemail.com 
wrote:

> Thanks Volker for preparing the release.
>
> All tests pass on debian buster, except
>
> sage -t --long --random-seed=146168601452887490256495561253701871534 
> src/sage/tests/cmdline.py  # 3 doctests failed 
>
> as squlite executable is not available.
>
> Volker Braun schrieb am Sonntag, 16. Januar 2022 um 18:17:36 UTC+1:
>
>> As always, you can get the latest beta version from the "develop" git 
>> branch. Alternatively, the self-contained source tarball is at 
>> http://www.sagemath.org/download-latest.html
>>
>> f9b2db94f6 (tag: 9.5.rc2, trac/develop) Updated SageMath version to 
>> 9.5.rc2
>> 7a9347dbc0 Trac #33155: Broken install using system pythons < 3.10 from 
>> python.org macOS packages
>> fe634f8613 Trac #33162: Fix installation of cryptominisat and pycryptosat
>> 9ceaaea7a7 Trac #33153: opensuse-tumbleweed: sagelib build fails
>> 3da1b22c25 (tag: 9.5.rc1) Updated SageMath version to 9.5.rc1
>>
>

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[sage-release] Re: Sage 9.5.rc2 release

['jonatha...@googlemail.com' via sage-release]

Thanks Volker for preparing the release.

All tests pass on debian buster, except

sage -t --long --random-seed=146168601452887490256495561253701871534 
src/sage/tests/cmdline.py  # 3 doctests failed 
   
as squlite executable is not available.

Volker Braun schrieb am Sonntag, 16. Januar 2022 um 18:17:36 UTC+1:

> As always, you can get the latest beta version from the "develop" git 
> branch. Alternatively, the self-contained source tarball is at 
> http://www.sagemath.org/download-latest.html
>
> f9b2db94f6 (tag: 9.5.rc2, trac/develop) Updated SageMath version to 9.5.rc2
> 7a9347dbc0 Trac #33155: Broken install using system pythons < 3.10 from 
> python.org macOS packages
> fe634f8613 Trac #33162: Fix installation of cryptominisat and pycryptosat
> 9ceaaea7a7 Trac #33153: opensuse-tumbleweed: sagelib build fails
> 3da1b22c25 (tag: 9.5.rc1) Updated SageMath version to 9.5.rc1
>

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Re: [sage-release] Re: Sage 9.5.rc1 released

['axio...@yahoo.de' via sage-release]

The findstat fixes (all trivial) are ready at 
https://trac.sagemath.org/ticket/33190.

On Saturday, 15 January 2022 at 08:09:30 UTC+1 Samuel Lelievre wrote:

> 2022-01-14 21:49 UTC, Sébastien Labbé:
> >
> > The failures with the following files are new and are copied below:
> >
> > SEED=115792415560373440200802359516411195501
> > alias sagetest="./sage -t --long --random-seed=$SEED"
> > sagetest src/sage/databases/findstat.py # 12 doctests failed
> > sagetest src/sage/databases/oeis.py # 1 doctest failed
> > sagetest src/sage/interfaces/mathematica.py # 1 doctest failed
>
> These might be a fallout of #32938, merged in Sage 9.5.rc0.
>
> - Sage Trac ticket #32938
> deactivation of the u-prefix doctest handler
> https://trac.sagemath.org/ticket/32938
>

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Re: [sage-release] Sage 9.5.rc1 released

[Matthias Köppe]

Many of the failures shown in test.log come from runtime use of compilers 
via the "cython" function.
This is tracked in https://trac.sagemath.org/ticket/31348

On Sunday, January 16, 2022 at 3:39:18 AM UTC-8 Kenji Iohara wrote:

> After building sage 9.5.rc1, I didmake test: here is the result
>
> --
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 src/sage/env.py  # 1 
> doctest failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/misc/superseded.py  # 6 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/misc/cython.py  # 18 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/misc/cachefunc.pyx  # 54 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/misc/session.pyx  # 2 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/misc/inherit_comparison.pyx  # 5 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/misc/sagedoc.py  # 2 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/misc/nested_class.pyx  # 6 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/misc/lazy_attribute.pyx  # 3 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/misc/sageinspect.py  # 35 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/parallel/decorate.py  # 2 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/ext/memory_allocator.pxd  # 6 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/ext/memory_allocator.pyx  # 9 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/features/__init__.py  # 2 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/tests/cmdline.py  # 4 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/repl/ipython_extension.py  # 2 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/repl/load.py  # 2 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/docs/instancedoc.pyx  # 4 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/arith/long.pxd  # 14 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/cpython/wrapperdescr.pxd  # 6 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/cpython/string.pyx  # 1 doctest failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/cpython/cython_metaclass.pyx  # 4 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/cpython/getattr.pyx  # 4 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/rings/integer_fake.pxd  # 1 doctest failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/rings/tate_algebra_ideal.pyx  # 6 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/rings/polynomial/ore_polynomial_element.pyx  # 6 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/graphs/connectivity.pyx  # 2 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/graphs/graph_decompositions/fast_digraph.pyx  # 5 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/symbolic/pynac.pxi  # 1 doctest failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/structure/element.pyx  # 37 doctests failed
> sage -t --warn-long 92.2 
> --random-seed=248274298638072512956919107891022172471 
> src/sage/structure/factory.pyx  # 8 doctests failed
> --
> Total time for all tests: 7761.5 seconds
> cpu time: 5776.9 seconds
> cumulative wall time: 7464.5 seconds
> Features detected for doctesting: 
> 

[sage-release] Sage 9.5.rc2 release

[Volker Braun]

As always, you can get the latest beta version from the "develop" git 
branch. Alternatively, the self-contained source tarball is at 
http://www.sagemath.org/download-latest.html

f9b2db94f6 (tag: 9.5.rc2, trac/develop) Updated SageMath version to 9.5.rc2
7a9347dbc0 Trac #33155: Broken install using system pythons < 3.10 from 
python.org macOS packages
fe634f8613 Trac #33162: Fix installation of cryptominisat and pycryptosat
9ceaaea7a7 Trac #33153: opensuse-tumbleweed: sagelib build fails
3da1b22c25 (tag: 9.5.rc1) Updated SageMath version to 9.5.rc1

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Re: [sage-release] Re: Sage 9.5.rc1 released

[Matthias Köppe]

>From singularlog:

In file included from bbfan.cc:17:
In file included from ./gfan.h:18:
/Users/gms/sage/sage-9.5.rc1/local/include/cddlib/cdd.h:26:10: fatal error: 
'cdd_f.h' file not found
#include "cdd_f.h"
 ^
1 error generated.
make[10]: *** [gfanlib_la-bbfan.lo] Error 1

This is very strange. Could you (1) check what's in local/include/cddlib/ 
and (2) reinstall cddlib using "make cddlib-clean cddlib"?


On Sunday, January 16, 2022 at 2:17:58 AM UTC-8 list...@gmail.com wrote:

>
> There was no /usr/local/opt.
> I eliminated all references to /usr/local/opt in .bash_profile.
> Uninstalled homebrew and reinstalled it.
>
> I get
>
> make[2]: *** [all-start] Error 2
>
>
> real 4m27.295s
>
> user 12m14.754s
>
> sys 3m20.702s
>
> ***
>
> Error building Sage.
>
>
> The following package(s) may have failed to build (not necessarily
>
> during this run of 'make all-start'):
>
>
> * package: iml-1.0.4p1.p2
>
>   last build time: Jan 16 00:17
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2
>
>
> * package: singular-4.2.1p3
>
>   last build time: Jan 16 00:18
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/singular-4.2.1p3.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/singular-4.2.1p3
>
>
> * package: tachyon-0.98.9.p7
>
>   last build time: Jan 16 11:08
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/tachyon-0.98.9.p7.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/tachyon-0.98.9.p7
>
>
> [...]
>
>
> make[1]: *** [all-start] Error 1
>
> make: *** [all] Error 2
>
> Logs attached.
>
> On Sun, 16 Jan 2022 at 01:38, Matthias Köppe  wrote:
>
>> It looks like you have homebrew installed both for x86_64 (in /usr/local) 
>> and for arm64 (in /opt/homebrew). Could you check if moving /usr/local out 
>> of the way fixes the build errors?
>>
>> On Saturday, January 15, 2022 at 4:25:49 PM UTC-8 list...@gmail.com 
>> wrote:
>>
>>>
>>> Here it is.
>>>
>>> On Sun, 16 Jan 2022 at 01:23, Matthias Köppe  
>>> wrote:
>>>
 config.log please

 On Saturday, January 15, 2022 at 3:24:58 PM UTC-8 list...@gmail.com 
 wrote:

>
> Trying to build on an M1 Mac under macOS 11.6.2, I get
>
> make[2]: *** [all-start] Error 2
>
>
> real 3m36.733s
>
> user 4m58.426s
>
> sys 1m2.949s
>
> ***
>
> Error building Sage.
>
>
> The following package(s) may have failed to build (not necessarily
>
> during this run of 'make all-start'):
>
>
> * package: zn_poly-0.9.2
>
>   last build time: Jan 16 00:17
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/zn_poly-0.9.2.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/zn_poly-0.9.2
>
>
> * package: ratpoints-2.1.3.p5
>
>   last build time: Jan 16 00:17
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/ratpoints-2.1.3.p5.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/ratpoints-2.1.3.p5
>
>
> * package: iml-1.0.4p1.p2
>
>   last build time: Jan 16 00:17
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2
>
>
> * package: singular-4.2.1p3
>
>   last build time: Jan 16 00:18
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/singular-4.2.1p3.log
>
>   build directory: 
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/singular-4.2.1p3
>
>
> [...]
>
>
> make[1]: *** [all-start] Error 1
>
> make: *** [all] Error 2
>
> Logs attached.
>
> HTH
>
> Guillermo
>
> On Sat, 15 Jan 2022 at 22:01, Matthias Köppe  
> wrote:
>
>> Based on the runs on GH Actions, I have updated the summary of 
>> platform support in 
>> https://wiki.sagemath.org/ReleaseTours/sage-9.5#Sources
>>
>> TL;DR: It's all good now on all platforms tested on GH Actions, 
>> including Cygwin.
>> But I would urge that 9.5 still merge the positively reviews tickets 
>> marked "critical"/"blocker", such as 
>> https://trac.sagemath.org/ticket/29285 (which fixes the build in the 
>> presence of pyenv).
>> Also *note we have absolutely no automatic testing for the Apple 
>> Silicon (M1) platform.* So it would be good if users/developers who 
>> have access to this platform test the release 

Re: [sage-release] Re: Sage 9.5.rc1 released

[G. M.-S.]

I should add that this failed:

$ brew install apaffenholz/polymake/polymake

[...]

==> *./configure --prefix=/opt/homebrew/Cellar/polymake/4.5 --without-bliss
--without-java --without-scip --without-soplex --without-singular
--with-brew=bottle*

Last 15 lines from /Users/gms/Library/Logs/Homebrew/polymake/219.configure:

2022-01-16 10:22:51 +


./configure

--prefix=/opt/homebrew/Cellar/polymake/4.5

--without-bliss

--without-java

--without-scip

--without-soplex

--without-singular

--with-brew=bottle


checking C++ compiler ... ok (clang++ is Apple CLANG (roughly 10.0) from
Xcode 13.0.0)

checking C++ library ... ok (libc++ 12000, C++ 201402)

checking for package manager ... Homebrew installation seems corrupt: no
shared libraries found in /usr/local/lib


If reporting this issue please do so at (not Homebrew/brew or
Homebrew/core):

  https://github.com/apaffenholz/homebrew-polymake/issues


These open issues may also help:

Brewing polymake on Apple Silicon / M1 / arm
https://github.com/apaffenholz/homebrew-polymake/issues/2

and I could not find anything relevant about this.

On Sun, 16 Jan 2022 at 11:17, G. M.-S.  wrote:

>
> There was no /usr/local/opt.
> I eliminated all references to /usr/local/opt in .bash_profile.
> Uninstalled homebrew and reinstalled it.
>
> I get
>
> make[2]: *** [all-start] Error 2
>
>
> real 4m27.295s
>
> user 12m14.754s
>
> sys 3m20.702s
>
> ***
>
> Error building Sage.
>
>
> The following package(s) may have failed to build (not necessarily
>
> during this run of 'make all-start'):
>
>
> * package: iml-1.0.4p1.p2
>
>   last build time: Jan 16 00:17
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log
>
>   build directory:
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2
>
>
> * package: singular-4.2.1p3
>
>   last build time: Jan 16 00:18
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/singular-4.2.1p3.log
>
>   build directory:
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/singular-4.2.1p3
>
>
> * package: tachyon-0.98.9.p7
>
>   last build time: Jan 16 11:08
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/tachyon-0.98.9.p7.log
>
>   build directory:
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/tachyon-0.98.9.p7
>
>
> [...]
>
>
> make[1]: *** [all-start] Error 1
>
> make: *** [all] Error 2
>
> Logs attached.
>
> On Sun, 16 Jan 2022 at 01:38, Matthias Köppe 
> wrote:
>
>> It looks like you have homebrew installed both for x86_64 (in /usr/local)
>> and for arm64 (in /opt/homebrew). Could you check if moving /usr/local out
>> of the way fixes the build errors?
>>
>> On Saturday, January 15, 2022 at 4:25:49 PM UTC-8 list...@gmail.com
>> wrote:
>>
>>>
>>> Here it is.
>>>
>>> On Sun, 16 Jan 2022 at 01:23, Matthias Köppe 
>>> wrote:
>>>
 config.log please

 On Saturday, January 15, 2022 at 3:24:58 PM UTC-8 list...@gmail.com
 wrote:

>
> Trying to build on an M1 Mac under macOS 11.6.2, I get
>
> make[2]: *** [all-start] Error 2
>
>
> real 3m36.733s
>
> user 4m58.426s
>
> sys 1m2.949s
>
> ***
>
> Error building Sage.
>
>
> The following package(s) may have failed to build (not necessarily
>
> during this run of 'make all-start'):
>
>
> * package: zn_poly-0.9.2
>
>   last build time: Jan 16 00:17
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/zn_poly-0.9.2.log
>
>   build directory:
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/zn_poly-0.9.2
>
>
> * package: ratpoints-2.1.3.p5
>
>   last build time: Jan 16 00:17
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/ratpoints-2.1.3.p5.log
>
>   build directory:
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/ratpoints-2.1.3.p5
>
>
> * package: iml-1.0.4p1.p2
>
>   last build time: Jan 16 00:17
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/iml-1.0.4p1.p2.log
>
>   build directory:
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/iml-1.0.4p1.p2
>
>
> * package: singular-4.2.1p3
>
>   last build time: Jan 16 00:18
>
>   log file:
> /Users/gms/sage/sage-9.5.rc1/logs/pkgs/singular-4.2.1p3.log
>
>   build directory:
> /Users/gms/sage/sage-9.5.rc1/local/var/tmp/sage/build/singular-4.2.1p3
>
>
> [...]
>
>
> make[1]: *** [all-start] Error 1
>
> make: *** [all] Error 2
>
> Logs attached.
>
> HTH
>
> Guillermo
>
> On Sat, 15 Jan 2022 at 22:01, Matthias Köppe 
> wrote:
>
>> Based on the runs on GH Actions, I have updated the summary of
>> platform support in
>>