[sage-support] Re: Dimensional Analysis or Unit Conversion capability?

2009-06-13 Thread Robert Bradshaw

On Jun 12, 2009, at 3:07 PM, Maurizio wrote:

 Hi

 I'm going to suggest that interested parties just write a new
 package for Sage, after reviewing existing packages, instead
 of trying to bolt one of the existing packages onto Sage.

 I have honestly taken this into account, but there are a couple of
 cons:
 - nobody is volunteering, so the amount of work-time seems very
 limited
 - I don't like to reinvent the wheel, that's why I like SAGE so much
 - I have very limited experience about Python programming (especially
 classes and stuff like that)
 - I would like to take advantage of others' experience about designing
 a package like that


 Unit conversion and dimensions analysis isn't very complicated,
 so it's probably easier to just write it anew.
 The existing packages have various features, so someone
 can just pick and choose the features they want.

Yep, it's not very hard, but it's apparently not very important  
either (relative to other stuff going on).

 By the way, do you think is it convenient to create a new wiki page
 about this topic to summarize all this stuff? I have two questions:
 first of all, I don't know how to do that, even if it seems pretty
 easy to modify an existing page. The second question is: on the wiki
 itself, the developers suggest to create a trac ticket with a wish
 list, instead of creating wiki pages. Nonetheless, there is that SEP
 (SAGE Enhancement Proposal) there, which seems a suitable place to
 write.
 Last doubt: is anybody going to read it? :)

A wiki page has a much more permanent and easy to read than an email  
thread. A wishlist trac ticket is good for smaller, easily defined  
chunks, but not for collaboratively deciding (and recording) what the  
plan of attack is. It also makes it easier to pick up and see what  
the current status of something is. This is more like a SEP (albeit a  
small one) than a ticket.

- Robert


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[sage-support] Re: Interior points of a parametric graph

2009-06-13 Thread William Stein

2009/6/12 Ethan Van Andel evlu...@gmail.com:

 I want to evaluate a function on points in the interior of a
 parametric function. Essentially what I'm trying to do is call
 complex_plot on the interior of a figure. To do this, I need some way
 to check whether a given point is in the figure, or simply generate a
 good list of points that are in. What is the best way to do this?

 It seems like when sage has to do something to the interior of a
 figure (like fill a parametric plot) it uses a polygon which
 presumable knows/can generate points in the interior. However, I cant
 track down, in the documentation, the code that does this. Where
 should I look?

The code that does this is in the matplotlib library, which is a
Python library Sage includes to do plotting.

 -- William


 Thanks to everyone who has answered my questions so far.
 




-- 
William Stein
Associate Professor of Mathematics
University of Washington
http://wstein.org

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[sage-support] Re: Optimization Resources

2009-06-13 Thread William Stein

2009/6/12 evlu...@gmail.com evlu...@gmail.com:

 I'm working on some code that is very computationally intensive. I'm
 pretty sure my algorithm is good, but I know that tiny differences in
 wording in sage can make a huge runtime difference. Is there any site/
 blog/whatever that I could look at to find out what makes for fast
 sage code? I figure this is preferable to constantly spamming sage-
 support with optimization questions.


In my experience, if you want to write really fast code using Sage or
any other software there is no substitute for putting in the work to
deeply understand the algorithms you are using and how they are
implemented.Nothing beats reading the source code, etc.  If foo is
any Sage function one way to get started reading the sources for foo
is to type foo?.

Often code in any math software system is far from optimal, and only
gets (a lot) faster when somebody decides to build something using
that software, and either improves Sage or at the least complains
about parts of the software that are two slow -- e.g., yesterday
somebody complained to me that determinants of sparse matrices over ZZ
in Sage are currently really slow compared to dets of dense matrices,
so I'll likely fix this.

 -- William

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[sage-support] Re: Optimization Resources

2009-06-13 Thread Minh Nguyen

On Sat, Jun 13, 2009 at 5:27 PM, William Steinwst...@gmail.com wrote:

 2009/6/12 evlu...@gmail.com evlu...@gmail.com:

 I'm working on some code that is very computationally intensive. I'm
 pretty sure my algorithm is good, but I know that tiny differences in
 wording in sage can make a huge runtime difference. Is there any site/
 blog/whatever that I could look at to find out what makes for fast
 sage code? I figure this is preferable to constantly spamming sage-
 support with optimization questions.


 In my experience, if you want to write really fast code using Sage or
 any other software there is no substitute for putting in the work to
 deeply understand the algorithms you are using and how they are
 implemented.    Nothing beats reading the source code, etc.  If foo is
 any Sage function one way to get started reading the sources for foo
 is to type foo?.

Just to add to William's comments, the command

sage: foo?

shows the online documentation of the function foo. To get the source
code for foo, do

sage: foo??

That is, type two question marks after the function name. Both foo?
and foo?? also show the path to the source file in which foo can be
found, so that should be an indication of where to look.

In my experience, a choice of data structure is also important. For
example, searching with a dictionary is usually way faster than
implementing your own search algorithm. One needs to work on a case by
case basis.

-- 
Regards
Minh Van Nguyen

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[sage-support] Re: show(integrate(sin(x^2))) does not format correctly

2009-06-13 Thread William Stein

2009/6/12 jon mr.j.stewart@btinternet.com:

 I have just installed Sage Version 4.0.1 vmware image on windows XP.
 I am using the Sage notebook.
 Browser is firefox 3.0.6 (with the TeX fonts installed for jsMath)
 Typeset is checked in the notebook.

 When I evaluate the fields in the demo page the result for the show
 (integrate(sin(x^2))) does not format correctly. The latex formatted
 result should be as below.

 \frac{{\sqrt{ \pi } \left( {\left( {\sqrt{ 2 } i} + \sqrt{ 2 } \right)
 \text{erf} \left( \frac{{\left( {\sqrt{ 2 } i} + \sqrt{ 2 } \right) x}}
 {2} \right)} + {\left( {\sqrt{ 2 } i} - \sqrt{ 2 } \right) \text{erf}
 \left( \frac{{\left( {\sqrt{ 2 } i} - \sqrt{ 2 } \right) x}}{2}
 \right)} \right)}}{8}

 (This is in the html of the flat demo page included in the install)


 But when I click on evaluate the formatted result changes to this:

 \frac{1}{8} \, {(\left(I - 1\right) \, \sqrt{2} \mbox{\text{erf}}\left
 (\left(\frac{1}{2} I - \frac{1}{2}\right) \, \sqrt{2} x\right) + \left
 (I + 1\right) \, \sqrt{2} \mbox{\text{erf}}\left(\left(\frac{1}{2} I +
 \frac{1}{2}\right) \, \sqrt{2} x\right))} \sqrt{\pi}

 The latex formatting is different and the square root of -1 is being
 returned as I (uppercase) and not as i (lowercase).

 Is there a configuration change I have to make to get my installation
 to behave the same as the installation the demo page was saved on?

No.  The version of Sage in which the sample worksheet was created is
different than the version of Sage that ships with sage-vmware-4.0.1.
 I should just update
the sample worksheet using the new version of Sage.

William

 -- William

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[sage-support] strange behavior

2009-06-13 Thread Florian Beutler

Hay
I am a bit annoyed by sage... I just want to print a function two
times and sage gives me an error... this is the first script

#!/usr/bin/env sage -python
import sys
from sage.all import *

import functions
from functions import *

grav_const = 4.3e-06
pi = 3.14159265358979323846
sat_mass = 20.

print Ok... dann legen wir mal los!\n
print step1: definition of the density profile

r = 0.08

print rho(r),\n

print step3: definition of the integrated mass

print mass(r).n(),\n

print step3: definition of the integrated mass

print mass(r).n(),\n

the function definition is the following

import sys
from sage.all import *

def rho(r):
return  1.32419e+08/(1.+(r/0.81))**3

def mass(r):
pi = 3.14159265358979323846

x=var('x')
assume(x0)
i_term = integral(x**2*rho(x), x, 0, r)

return i_term*4.*pi;

so I just try to plot the mass two times... the error message of sage
is not very helpful (at least to me)
thanks for any help
florian



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[sage-support] Re: Help! Why the polynomial is not generated for Multivariate Polynomial Ring in y0, y1, y2, y3, y4, y5, y6, y7, x0, x1, x2, x3, x4, x5, x6, x7 over Finite Field of size 2

2009-06-13 Thread Saj

sage: hg_sage.patch('sbox_call_and_rest.patch');
cd /usr/local/bin/sage-3.4.2/devel/sage  hg status
cd /usr/local/bin/sage-3.4.2/devel/sage  hg status
cd /usr/local/bin/sage-3.4.2/devel/sage  hg import   /usr/local/
bin/sbox_call_and_rest.patch
applying /usr/local/bin/sbox_call_and_rest.patch
patching file doc/en/reference/cryptography.rst
Hunk #1 FAILED at 16
1 out of 1 hunks FAILED -- saving rejects to file doc/en/reference/
cryptography.rst.rej
patching file sage/crypto/mq/sbox.py
Hunk #1 FAILED at 0
Hunk #2 FAILED at 45
Hunk #3 FAILED at 105
Hunk #4 FAILED at 115
Hunk #5 FAILED at 126
Hunk #6 FAILED at 134
Hunk #7 FAILED at 163
Hunk #8 FAILED at 191
Hunk #9 FAILED at 204
Hunk #10 FAILED at 246
Hunk #11 FAILED at 262
Hunk #12 FAILED at 270
Hunk #13 FAILED at 287
Hunk #14 FAILED at 301
Hunk #15 FAILED at 319
Hunk #16 FAILED at 329
Hunk #17 FAILED at 349
Hunk #18 FAILED at 375
Hunk #19 FAILED at 392
Hunk #20 FAILED at 401
Hunk #21 FAILED at 420
Hunk #22 FAILED at 432
Hunk #23 FAILED at 468
Hunk #24 FAILED at 487
Hunk #25 FAILED at 499
Hunk #26 FAILED at 522
Hunk #27 FAILED at 550
Hunk #28 FAILED at 590
Hunk #29 FAILED at 598
Hunk #30 FAILED at 682
Hunk #31 FAILED at 713
31 out of 31 hunks FAILED -- saving rejects to file sage/crypto/mq/
sbox.py.rej
abort: patch failed to apply

Still Error!


On May 29, 1:14 am, LBerlioz luisberl...@gmail.com wrote:
 maybe this quick tutorial can be  
 useful:http://www.sagemath.org/doc/developer/producing_patches.html
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[sage-support] Re: Help! Why the polynomial is not generated for Multivariate Polynomial Ring in y0, y1, y2, y3, y4, y5, y6, y7, x0, x1, x2, x3, x4, x5, x6, x7 over Finite Field of size 2

2009-06-13 Thread Minh Nguyen

Hi Saj,

On Sat, Jun 13, 2009 at 9:32 PM, Sajammasa...@gmail.com wrote:

SNIP

First, you should create another copy of the main Sage library. This
is called cloning. Here, I switch to the main Sage repository, then
clone it, naming my clone 6139 to reflect the ticket number that I'm
dealing with:
{{{
[mv...@darkstar sage-4.0]$ ./sage -b main
system messages
[mv...@darkstar sage-4.0]$ ./sage -clone 6139
more system messages
}}}
After cloning, I then switch to the cloned repository and start
applying patches:
{{{
[mv...@darkstar sage-4.0]$ ./sage -br 6139
more system messages
--
| Sage Version 4.0, Release Date: 2009-05-29 |
| Type notebook() for the GUI, and license() for information.|
--
Loading Sage library. Current Mercurial branch is: 6139
sage: 
hg_sage.apply(http://trac.sagemath.org/sage_trac/raw-attachment/ticket/6139/sbox_call_and_rest.patch;)
Attempting to load remote file:
http://trac.sagemath.org/sage_trac/raw-attachment/ticket/6139/sbox_call_and_rest.patch
Loading: [...]
cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg status
cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg status
cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg import
/home/mvngu/.sage/temp/darkstar/6309/tmp_1.patch
applying /home/mvngu/.sage/temp/darkstar/6309/tmp_1.patch
sage: 
hg_sage.apply(http://trac.sagemath.org/sage_trac/raw-attachment/ticket/6139/trac_6139-reviewer.patch;)
Attempting to load remote file:
http://trac.sagemath.org/sage_trac/raw-attachment/ticket/6139/trac_6139-reviewer.patch
Loading: [.]
cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg status
cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg status
cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg import
/home/mvngu/.sage/temp/darkstar/6309/tmp_2.patch
applying /home/mvngu/.sage/temp/darkstar/6309/tmp_2.patch
}}}
Now I quit Sage, start it again using the 6139 branch, and proceed
with working using that branch:
{{{
sage: exit
Exiting SAGE (CPU time 0m0.41s, Wall time 0m44.16s).
[mv...@darkstar sage-4.0]$ ./sage -br 6139
more system messages
--
| Sage Version 4.0, Release Date: 2009-05-29 |
| Type notebook() for the GUI, and license() for information.|
--
Loading Sage library. Current Mercurial branch is: 6139
sage: S = mq.SBox(3, 0, 1, 3, 1, 0, 2, 2)
sage: S(0)
3
sage: S([0,0,0])
[1, 1]
}}}
Anyway, I noticed in previous emails on this thread that you installed
Sage in a system-wide directory, i.e. somewhere under /usr/local.
That's only recommended if other users besides yourself on the system
will be using the Sage installation. You don't need to install Sage in
a system-wide directory. You can install it under your home directory.

Hope the tips help.

-- 
Regards
Minh Van Nguyen

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[sage-support] Re: Help! Why the polynomial is not generated for Multivariate Polynomial Ring in y0, y1, y2, y3, y4, y5, y6, y7, x0, x1, x2, x3, x4, x5, x6, x7 over Finite Field of size 2

2009-06-13 Thread Saj

Thanks Minh Nguyen.

It worked great!

On Jun 13, 5:17 pm, Minh Nguyen nguyenmi...@gmail.com wrote:
 Hi Saj,

 On Sat, Jun 13, 2009 at 9:32 PM, Sajammasa...@gmail.com wrote:

 SNIP

 First, you should create another copy of the main Sage library. This
 is called cloning. Here, I switch to the main Sage repository, then
 clone it, naming my clone 6139 to reflect the ticket number that I'm
 dealing with:
 {{{
 [mv...@darkstar sage-4.0]$ ./sage -b main
 system messages
 [mv...@darkstar sage-4.0]$ ./sage -clone 6139
 more system messages}}}

 After cloning, I then switch to the cloned repository and start
 applying patches:
 {{{
 [mv...@darkstar sage-4.0]$ ./sage -br 6139
 more system messages
 --
 | Sage Version 4.0, Release Date: 2009-05-29                         |
 | Type notebook() for the GUI, and license() for information.        |
 --
 Loading Sage library. Current Mercurial branch is: 6139
 sage: 
 hg_sage.apply(http://trac.sagemath.org/sage_trac/raw-attachment/ticket/6139/sbox_ca...;)
 Attempting to load remote 
 file:http://trac.sagemath.org/sage_trac/raw-attachment/ticket/6139/sbox_ca...
 Loading: [...]
 cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg status
 cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg status
 cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg import
 /home/mvngu/.sage/temp/darkstar/6309/tmp_1.patch
 applying /home/mvngu/.sage/temp/darkstar/6309/tmp_1.patch
 sage: 
 hg_sage.apply(http://trac.sagemath.org/sage_trac/raw-attachment/ticket/6139/trac_61...;)
 Attempting to load remote 
 file:http://trac.sagemath.org/sage_trac/raw-attachment/ticket/6139/trac_61...
 Loading: [.]
 cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg status
 cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg status
 cd /home/mvngu/usr/bin/sage-4.0/devel/sage  hg import
 /home/mvngu/.sage/temp/darkstar/6309/tmp_2.patch
 applying /home/mvngu/.sage/temp/darkstar/6309/tmp_2.patch}}}

 Now I quit Sage, start it again using the 6139 branch, and proceed
 with working using that branch:
 {{{
 sage: exit
 Exiting SAGE (CPU time 0m0.41s, Wall time 0m44.16s).
 [mv...@darkstar sage-4.0]$ ./sage -br 6139
 more system messages
 --
 | Sage Version 4.0, Release Date: 2009-05-29                         |
 | Type notebook() for the GUI, and license() for information.        |
 --
 Loading Sage library. Current Mercurial branch is: 6139
 sage: S = mq.SBox(3, 0, 1, 3, 1, 0, 2, 2)
 sage: S(0)
 3
 sage: S([0,0,0])
 [1, 1]}}}

 Anyway, I noticed in previous emails on this thread that you installed
 Sage in a system-wide directory, i.e. somewhere under /usr/local.
 That's only recommended if other users besides yourself on the system
 will be using the Sage installation. You don't need to install Sage in
 a system-wide directory. You can install it under your home directory.

 Hope the tips help.

 --
 Regards
 Minh Van Nguyen
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[sage-support] Re: Mac OS X 10.4 32bit G4 Support

2009-06-13 Thread paramaniac

 I think it is about time to do a serious audit of the Sage
 distribution and figure out precisely why it has got so large.I'm
 puzzled though by the 680MB compressed, since the binaries here are
 much smaller than that:

 http://sagemath.org/bin/apple_osx/intel/index.html

 Did you use sage -bdist 4.0.1-OSX10.4-PowerPC to make the binary?
 If not, then you've made one that would be too big.

Well, I downloaded the source code
http://www.sagemath.org/src/sage-4.0.1.tar
and typed make. Afterwards, I created the .dmg file with Disk
Utility command FileNewCreate Image from Folder. There's only one
compression grade. XCode version is 2.5 on Mac OS X 10.4.11 (my
machine is too old for OS X 10.5).
Hope this helps.

Regards,
Lukas
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[sage-support] Re: Mac OS X 10.4 32bit G4 Support

2009-06-13 Thread William Stein

2009/6/13 paramaniac luka...@student.ethz.ch:

 I think it is about time to do a serious audit of the Sage
 distribution and figure out precisely why it has got so large.    I'm
 puzzled though by the 680MB compressed, since the binaries here are
 much smaller than that:

 http://sagemath.org/bin/apple_osx/intel/index.html

 Did you use sage -bdist 4.0.1-OSX10.4-PowerPC to make the binary?
 If not, then you've made one that would be too big.

 Well, I downloaded the source code
 http://www.sagemath.org/src/sage-4.0.1.tar
 and typed make. Afterwards, I created the .dmg file with Disk
 Utility command FileNewCreate Image from Folder. There's only one
 compression grade. XCode version is 2.5 on Mac OS X 10.4.11 (my
 machine is too old for OS X 10.5).
 Hope this helps.

That's definitely the wrong thing to do.  You should make the dmg by typing

  ./sage -bdist 4.0.1-OSX10.4-PowerPC

and then wait 15 minutes and look in the SAGE_ROOT/dist directory.

William

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[sage-support] Re: strange behavior

2009-06-13 Thread William Stein

2009/6/13 Florian Beutler florian.beut...@gmx.de:

 Hay
 I am a bit annoyed by sage... I just want to print a function two
 times and sage gives me an error... this is the first script
 
 #!/usr/bin/env sage -python
 import sys
 from sage.all import *

 import functions
 from functions import *

 grav_const = 4.3e-06
 pi = 3.14159265358979323846
 sat_mass = 20.

 print Ok... dann legen wir mal los!\n
 print step1: definition of the density profile

 r = 0.08

 print rho(r),\n

 print step3: definition of the integrated mass

 print mass(r).n(),\n

 print step3: definition of the integrated mass

 print mass(r).n(),\n
 
 the function definition is the following
 
 import sys
 from sage.all import *

 def rho(r):
    return  1.32419e+08/(1.+(r/0.81))**3

 def mass(r):
    pi = 3.14159265358979323846

    x=var('x')
    assume(x0)
    i_term = integral(x**2*rho(x), x, 0, r)

    return i_term*4.*pi;
 
 so I just try to plot the mass two times... the error message of sage
 is not very helpful (at least to me)
 thanks for any help
 florian

The error message might be helpful to somebody besides you, so perhaps
you could post the error message here?

William

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[sage-support] Re: notebook doesn't open

2009-06-13 Thread rcrowno...@sbcglobal.net

Did you ever get a reply?  This is my problem also.

On Apr 24, 9:58 pm, Yo-Yo yohannes...@gmail.com wrote:
 Hello all. hope all is well w/ all of u. anywho, when ever i try to
 use the sage program by writing note as it instructs me to do so, it
 doesn't appear to work. i am getting an error which states,
 sh: cannot createnotebook.log: Permission denied echo: write erro:
 Broken pipe

 Does any one kno how to fix this problem.

 your help is dearly appreciated. Thank you all...

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[sage-support] Dimensional Analysis or Unit Conversion capability?

2009-06-13 Thread Maurizio
I created the wiki page for this in SEP:

http://wiki.sagemath.org/SEP

Unfortunately, it seems I don't have the rights to modify the page I
created. I attach here that page, can somebody upload it?

Any comment is greatly appreciated.

Maurizio

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Unit of Measurement.wiki
Description: Binary data