Re: [Skim-app-users] Embedded notes on a pdf

2012-01-14 Thread Christiaan Hofman

On Jan 14, 2012, at 6:19, Nicole Busch wrote:

 Hi,
 I am a teacher and have been using skim to mark pdf files online.  
 Occasionally I get a PDF file that I can open in skim make my notes, and 
 export as a pdf with embedded notes, but when I open this file with Adobe, I 
 can't see the notes I made.  If I open it in Skim, the notes are still there. 
  It has happened on a few files but for the most part I can export the file 
 with notes and I can see them just fine.  I don't know what I am doing wrong. 
  If you could please help me I would really appreciate it.  
 PS.  I am not very savvy on a Mac yet so I apologize if this is something 
 very stupid that I am doing wrong.
 
 Thanks!
 Nicole

Please read the FAQ on the Wiki.

Christiaan

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Re: [Skim-app-users] Embedded notes on a pdf

2012-01-14 Thread Nicole Busch
Thank you so much Thomas,
I am afraid I am not sure where or how I would put this script in, do you
know how I would do this?  Just to clarify I can usually just click
export and then choose the file type as pdf with embedded notes and
that usually works with the exception of about 3 files I have been sent so
far.  Do you think this script would help this?
Thanks again for your help!
Nicole

On Fri, Jan 13, 2012 at 11:17 PM, Thomas Schneider schne...@mail.nih.govwrote:

 Nicole:

  I am a teacher and have been using skim to mark pdf files online.
  Occasionally I get a PDF file that I can open in skim make my notes,
  and export as a pdf with embedded notes, but when I open this file
  with Adobe, I can't see the notes I made.  If I open it in Skim, the
  notes are still there.  It has happened on a few files but for the
  most part I can export the file with notes and I can see them just
  fine.  I don't know what I am doing wrong.  If you could please help
  me I would really appreciate it.

 Skim keeps its notes in the file system, not in the PDF itself.  I
 think this probably trips up every new user.  What you have to do is
 embed the notes into the actual pdf.  I put a script at:

 http://alum.mit.edu/www/toms/ftp/skimembed

 that you can use.

 Tom

  Thomas D. Schneider, Ph.D.
  National Institutes of Health
  National Cancer Institute
  Gene Regulation and Chromosome Biology Laboratory
  Molecular Information Theory Group
  Frederick, Maryland  21702-1201
  301-846-5581
  http://alum.mit.edu/www/toms (permanent)


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Re: [Skim-app-users] Embedded notes on a pdf

2012-01-14 Thread Christiaan Hofman

On Jan 14, 2012, at 23:35, Nicole Busch wrote:

 Thank you so much Thomas,
 I am afraid I am not sure where or how I would put this script in, do you 
 know how I would do this?  Just to clarify I can usually just click export 
 and then choose the file type as pdf with embedded notes and that usually 
 works with the exception of about 3 files I have been sent so far.  Do you 
 think this script would help this?
 Thanks again for your help!
 Nicole

Probably not. If you can't save with embedded notes, than almost certainly the 
PDF is print protected, which also means it cannot be saved without the owner 
password.

Christiaan

 
 On Fri, Jan 13, 2012 at 11:17 PM, Thomas Schneider schne...@mail.nih.gov 
 wrote:
 Nicole:
 
  I am a teacher and have been using skim to mark pdf files online.
  Occasionally I get a PDF file that I can open in skim make my notes,
  and export as a pdf with embedded notes, but when I open this file
  with Adobe, I can't see the notes I made.  If I open it in Skim, the
  notes are still there.  It has happened on a few files but for the
  most part I can export the file with notes and I can see them just
  fine.  I don't know what I am doing wrong.  If you could please help
  me I would really appreciate it.
 
 Skim keeps its notes in the file system, not in the PDF itself.  I
 think this probably trips up every new user.  What you have to do is
 embed the notes into the actual pdf.  I put a script at:
 
 http://alum.mit.edu/www/toms/ftp/skimembed
 
 that you can use.
 
 Tom
 
  Thomas D. Schneider, Ph.D.
  National Institutes of Health
  National Cancer Institute
  Gene Regulation and Chromosome Biology Laboratory
  Molecular Information Theory Group
  Frederick, Maryland  21702-1201
  301-846-5581
  http://alum.mit.edu/www/toms (permanent)
 
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 RSA(R) Conference 2012
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 Register now!
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 Skim-app-users@lists.sourceforge.net
 https://lists.sourceforge.net/lists/listinfo/skim-app-users
 
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Re: [Skim-app-users] Embedded notes on a pdf

2012-01-14 Thread Thomas Schneider
Nicole:

 I am afraid I am not sure where or how I would put this script in,
 do you know how I would do this?  Just to clarify I can usually just
 click export and then choose the file type as pdf with embedded
 notes and that usually works with the exception of about 3 files I
 have been sent so far.  Do you think this script would help this?

Christiaan pointed out that you may not be able to do it at all.  I've
never seen this problem.

In any case, the script is to be run from the command line of Terminal:

% skimembed your.pdf

If you don't have the script in your path (or don't know what a path
is :) put skimembed in your home directory.  Start a Terminal (from
Utilities).  Make the file readable and executable by typing (after
the '%'):

% chmod u+rx skimembed 

Then type

% ./skimembed 

without a 'return'.  Then drag your PDF icon to the terminal and the
location will be given to skimembed.  You might need to type the
'return' key.  It is likely that this is equivalent to what you are
doing already.  If skimembed is in your path and you are in the right
directory, then the conversion is easier of course.

Tom

  Thomas D. Schneider, Ph.D.
  National Institutes of Health
  National Cancer Institute
  Gene Regulation and Chromosome Biology Laboratory
  Molecular Information Theory Group
  Frederick, Maryland  21702-1201
  301-846-5581
  http://alum.mit.edu/www/toms (permanent)

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