Thank you Natalie and Luis - following your advice and using yesterday
release things are working fine now.
Cheers,
Oded
On Nov 17, 8:38 pm, Luis Mendoza [EMAIL PROTECTED]
wrote:
Hello,
2) Thank you for reporting the tandem/mzML issue. We'll take a look.
Ah yes, this is a new change (mzML support in Tandem) that Petunia was not
ready for; it still thinks in mzXML terms. Sorry about that.
For a quick fix, please open the file C:\Inetpub\tpp-bin\tpp_gui.pl in
Wordpad (or Notepad, etc) and change line number 2494 from:
$out_file =~ s/\.mzXML$/\.tandem/i;
to:
$out_file =~ s/\.mz[X]?ML$/\.tandem/i;
(add square brackets around the X, followed by a question mark).
Save the file, and please try again.
We'll include a fix in the next release.
Thanks for reporting this!
--Luis
On Mon, Nov 17, 2008 at 5:29 AM, Oded [EMAIL PROTECTED] wrote:
Hi all,
[...]
In addition, if I use mzXL (that was created using TPP 4.1 ver0), for
X!Tandem search the results file overwrite the input file and appear
under that same name without the .tandem
For example the search results of Seq16480_orbi.mzXL will have the
name of Seq16480_orbi.mzXL and not the name Seq16480_orbi.tandem
or something similar. This output file seems to be OK if the .tandem
is added in the end.
Cheers,
Oded
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