[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-22 Thread Russell Faull
Not directly, but I would assume so, as unchecking 'Available to all
users' still works with 3.5.0-25.

I have also tried your suggestion at #60, thanks. It works for me -- but
I have reverted to the simple 'uncheck' as there seems no downside in my
installations and any future fix should be with NM not the init system.

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  Ext4 corruption associated with shutdown of Ubuntu 12.10

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-22 Thread Francisco Reverbel
Thanks Russel. I will upgrade to 3.5.0-25.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-18 Thread Bernd Schubert
Well, network usually does not break by killing dhclient, at least not if the 
lease does not expire just in this second. If we ignore this race, probably 
only modem processes are left. But these are not even considered by the 
add_sendsigs_omissions.patch. The patch only touches nm-dhcp-dhclient.c, 
nm-dhcp-dhcpcd.c, nm-dns-bind.c and nm-dns-dnsmasq.c. Except for the 
lease/shutdown race none of these should be required for anything that is 
already mounted - the kernel nfs client already knows the IP of the server.
If we don't want to ignore the lease race and we don't trust NM to kill 
sub-processes we need a to run killall5 a 2nd time and this time it only must 
ignore fuse processes. However, if the root file system or /etc or /var are on 
NFS, we cannot fix this race at all and have to leave it to the admin to 
provide sufficiently long leases.

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Re: [Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-18 Thread Steve Langasek
On Mon, Feb 18, 2013 at 08:32:14AM -, Bernd Schubert wrote:

 Well, network usually does not break by killing dhclient,

Irrelevant.  The dhclient process is managed by NM, and sendsigs must not
interfere with it.

 If we don't want to ignore the lease race and we don't trust NM to kill
 sub-processes

We *require* NM to clean up its subprocesses.  This is the only sane
architecture.  If NM is not doing so, that's a bug in NM.

 we need a to run killall5 a 2nd time

No.

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Re: [Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-18 Thread Bernd Schubert
On 02/18/2013 10:10 AM, Steve Langasek wrote:
 On Mon, Feb 18, 2013 at 08:32:14AM -, Bernd Schubert wrote:

 Well, network usually does not break by killing dhclient,

 Irrelevant.  The dhclient process is managed by NM, and sendsigs must not
 interfere with it.

 If we don't want to ignore the lease race and we don't trust NM to kill
 sub-processes

 We *require* NM to clean up its subprocesses.  This is the only sane
 architecture.  If NM is not doing so, that's a bug in NM.

Well, do as you like, but from my point of view an init system that does 
not properly kill processes is broken by design.
Relying on something is always wrong, especially if it is system 
critical (I got severe data loss on my btrfs partition due to this bug 
here). killall5 is there to enfore things, not to rely on them... It is 
nice that it speeds up shutdown, but that is only a side effect.
So far I also only see a patch in NM that made it worse than it had been 
before. Properly fixing NM is certainly correct, but that still is no 
enforcement that shutdown properly works.

I know how to fix it on my systems and I'm going to publish that 
information, but other than that I'm giving up on upstream.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-17 Thread Bernd Schubert
I fail to understand why so many people are insisting this is a kernel
bug. It isn't. What basically happens is that the network-manager
process is not killed by killall5. This process also has an open file
descriptor and therefore the root partitions cannot be mounted read-only
before shutdown, as the kernel reports it is busy. Network-manager will
not be killed due to the ubuntu patch add_sendsigs_omissions.patch,
which was added to NM for a similar reason:

From: Mathieu Trudel-Lapierre mathieu.trudel-lapie...@canonical.com
Subject: Move NM's spawns pid files to /run/sendsigs.omit.d.
Bug-Ubuntu: 
https://bugs.launchpad.net/ubuntu/+source/network-manager/+bug/869635

The pidfiles are only used by NM to start and be able to stop the same process,
their actual location doesn't overly matter. In this case, putting them
under /run/sendsigs.omit.d allows shutdown to skip over those as handled by
an upstart job, and in fact they are (although indirectly).

I have no idea what Mathieu actually intended with this patch, but it is 
entirely wrong and made everything worse. Instead of refusing to kill NM, it 
needs to be killed, which is just the other way around than what the patch is 
doing.
The only way to fix this from kernel point of view would be to write a kernel 
patch to allow to mount read-only while there are still file descriptors, which 
have write access. All those FDs would need to be closed from the kernel side 
and propably would cause application crashes.

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Re: [Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-17 Thread Steve Langasek
On Sun, Feb 17, 2013 at 09:04:32PM -, Bernd Schubert wrote:

 I have no idea what Mathieu actually intended with this patch, but it is
 entirely wrong and made everything worse.  Instead of refusing to kill NM,
 it needs to be killed, which is just the other way around than what the
 patch is doing.

The intent, which is correct, is that NM itself shuts down these subordinate
processes as part of the network shutdown *after* /etc/init.d/sendsigs is
run, instead of having them killed in an uncontrolled manner by
/etc/init.d/sendsigs and breaking the network.

Perhaps NM is failing to shut down the processes; but the sendsigs handling
itself remains correct.  /etc/init.d/sendsigs should not be allowed to
indiscriminately terminate processes that are needed for the network to run;
these processes need to be ended later, after /etc/init.d/umountnfs.sh has
unmounted all network filesystems.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-16 Thread Ernie 07
This bug also occurs in 64 bit 1304 (Raring) with kernel 3.8.0-6-generic.
Tested Friday 2013-02_16

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-08 Thread Russell Faull
I've just tested newly released kernel 3.5.0-24. It also works with
uncheck 'Available to all users' workaround mentioned above.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-03 Thread Sandor Rozsa
Yes, you are right, Francisco, I didn't uncheck the all users option. I am glad 
it helped. I hope others with this problem will also find this page and solve 
this problem this way. 
I don't know if an update to the kernel or any part of the system config will 
break this. Previously I had root filesystem problems, that was fixed by some 
killall commands ( I don't remeber the site, that suggested it) and I thought 
the problem is gone, but a few days later it started to do home corruptions, so 
I searched for this symptom again, and found this bug. 
Since Linux has a command for everything, I thought there must be one for 
disabling network through Networkmanager. I like Networkmanager, so I didn't 
want to disable it (I travel with my laptop and use wireless connection, so 
this is convenient.), but this command is perfectly does its job.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-02 Thread Sandor Rozsa
Hi Francisco,
I created a script in /etc/init.d (I copied from an existing script actually), 
at the stop part I inserted the command 
nmcli nm enable false and at the start part true.
Then I created a symlink for it S60networkm in /etc/rc2...rc5.d, and also 
K05networkm in /etc/rc0.d and rc6.d.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-02 Thread Francisco Reverbel
Thanks Sandor.  I did something similar, but in /etc/init. (See #60.)
Your comment (at #57) was very helpful!

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-02 Thread Russell Faull
Hi Fransisco' I agree that latest kernel has improved the situation. It
is now possible to simple uncheck 'Available to all users' in NM to get
a clean shutdown. Beware if you create a new network connection, because
it defaults to 'Available to all users' checked. Before the latest
kernel, this solution wouldn't work for me.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-02 Thread Francisco Reverbel
For people who need to live with this bug, it might be good to stress
that Sandor' s suggestion (#57 and #61) and my little hack (#60) rely on
the workaround at #13, which is effective with kernel 3.5.0-23-generic
(the current kernel in Ubuntu 12.10), but not with kernel
3.5.0-22-generic (the previous kernel in Ubuntu 12.10). I believe (but
am not quite sure) that the workaround was also ineffective with kernel
3.5.0-21-generic and that it was effective with the previous Quantal
kernels.

While this bug is not fixed I will think twice before doing a kernel
upgrade on Quantal, as a disk check on every boot makes the system
nearly unusable to me. I am not blaming the kernel, but it appears that
the workaround depends upon the timing of an upstart race condition,
which may change with the kernel version.

When a new kernel version comes out, I would like to know if the new
kernel will not break the workaround again.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-02 Thread Francisco Reverbel
Hi Russel,

With Sandor's hack (see #57 and #61, or, alternatively, #60) you do not
even need to uncheck Available to all users, as the shutdown and
startup scripts take care of disabling and enabling the NM.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-01 Thread Sandor Rozsa
Hi all,
I don't know how much time it may take to find why Networkmanager doesn't 
handle open files properly at shutdown, but since my home was also failing 
every time and manual disable networking through NM solved my problem (and 
shutdown is much faster), I added 
nmcli nm enable false|true 
to my stop and start-up scripts.
I wrote this to help others who may also have this problem and don't want to 
manually disable / enable networking everytime.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-01 Thread Francisco Reverbel
Hi Sandor,

Where exactly did you add the calls to nmcli?

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-01 Thread Ernie 07
This bug also occurs in 64 bit 1304 (Raring) with kernel 3.8.0-3-generic.
Tested Friday 2013-02_01

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-02-01 Thread Francisco Reverbel
Today I' ve seen an improvement in Quantal: the workaround suggested at
#13 resumed working after I got a kernel update from 3.5.0-22-generic to
3.5.0-23-generic.

Per Sandor' s suggestion,  I have added to /etc/init two files that
relieve me from the burden of manually disabling/enabling the network
manager.  These two files are shown below.

$ cat /etc/init/hack1-for-nm-bug.conf 
description Hack 1 to circumvent NetworkManager bug in Ubuntu 12.10

start on started gdm

script
  /usr/bin/nmcli nm enable true
end script

$ cat /etc/init/hack2-for-nm-bug.conf 
description Hack 2 to circumvent NetworkManager bug in Ubuntu 12.10

start on runlevel [016]

script
  /usr/bin/nmcli nm enable false
end script

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-31 Thread Russell Faull
Ok, where to next? Is more information needed from users?

It's gone quiet on what seems like an identified problem and narrowing
evidence pointing to two culprits.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-31 Thread Clint Byrum
Russell, the problem in network manager needs to be debugged. No
milestone is set yet, so its not known when it will be resolved, but it
does seem likely that the problem will be easy to fix given how
reproducible it is and how much insight we have into it now.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-31 Thread Bernd Schubert
Stupid question, why should network-manager not be killable? From my point of 
view everything should be killed before a shutdown except of processes, which 
are absolutely required to continue the shutdown/reboot. So for example if you 
are using unionfs-fuse for /, /etc or /var and kill its daemon, shutdown 
cannot continue. But how is that related to the network manager? 
Assuming there is a network file system involved, kill network-manager or 
dhclient should not fail the network connection, at least not unless network 
manager does that. But that would be a in network-manager and should be fixed 
instead. A simply workaround even would be to kill it with SIGTERM to give it 
no chance to do any harm.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-29 Thread Daniel J Blueman
Here, I see init (expected), dhclient, dnsmasq and plymouthd.

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Re: [Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-29 Thread Steve Langasek
On Tue, Jan 29, 2013 at 01:47:47PM -, Daniel J Blueman wrote:
 Here, I see init (expected), dhclient, dnsmasq and plymouthd.

plymouthd is also expected to be running but should not have any files open
for writing.  The other two are clearly associated with network-manager, and
seem to indicate a failure to clean up.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Clint Byrum
We saw issues like this in Ubuntu 11.10 as well, and it was resolved by
figuring out what is left running just before shutdown.

If you can edit /etc/init.d/umountroot and add this, just before the
line starting with 'mount', which on my 12.10 system is line 86:

/usr/sbin/lsof -n  /last-shutdown-lsof

(You may need to sudo apt-get install lsof)

This will record all open files just before root is remounted. Then
after verifying that the FS was detected as dirty (please, stop calling
it corrupt, it is not corrupt, just dirty) and fsck was run, upload the
file /last-shutdown-lsof to this bug and we can take a look at it.

(please check the content of that file. I don't think it will have any
sensitive data in it, but please check before uploading as this bug is
public).

Judging from the reports, I doubt very much that this has anything to do
with the kernel other than Ted T'so's suggestion that the kernel is
simply exposing the dirty filesystem.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Russell Faull
Thanks Clint, I will try and report back soon, but...
For me, lsof is located at /usr/bin/lsof not /usr/sbin/lsof

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Russell Faull
Ok, here are two version of last-shutdown-lsof.

last-shutdown-lsof-available-unchecked is a clean shutdown with network-
manager 'available to all users' unchecked.

last-shutdown-lsof-available-checked is a unclean shutdown with network-
manager 'available to all users' checked.

Hope this helps

** Attachment added: last-shutdown-lsof-available-unchecked
   
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1073433/+attachment/3505115/+files/last-shutdown-lsof-available-unchecked

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Russell Faull
Oops, here the other file.

** Attachment added: last-shutdown-lsof-available-checked
   
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1073433/+attachment/3505116/+files/last-shutdown-lsof-available-checked

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  Ext4 corruption associated with shutdown of Ubuntu 12.10

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Steve Langasek
Russell,

Your log shows dhclient holding a file open.  It also shows that Network
Manager itself is no longer running.  Can you confirm that Network
Manager is the only way dhclient is run on your system?

If this dhclient is from NM, then it seems that NM is failing to
correctly reap the dhclient at shutdown.  Opening a task for NM.

** Changed in: network-manager (Ubuntu)
   Status: Invalid = Triaged

** Changed in: network-manager (Ubuntu)
   Importance: Undecided = High

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  Ext4 corruption associated with shutdown of Ubuntu 12.10

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Russell Faull
Steve, as far as I can tell, NM is the only way that dhclient is
started/run. Is there a way to confirm this?

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Russell Faull
Further to #45, if I check 'Available to all user' (usually causing an
unclean filesystem at shutdown) and then do 'sudo service network-
manager stop' and then 'killall dhclient' the filesystem will then go
down cleanly.

Steve, I'm guessing that answers your question at #44.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Francisco Reverbel
Clint,

Here is the file last-shutdown-lsof I obtained per your instructions. It
was generated on Quantal, with Enable Networking unchecked before
shutdown.

My list of open files looks different from Russell's one.  I do not have
entries for dhcp, but I do have entries for modem-manager.

** Attachment added: last-shutdown-lsof
   
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1073433/+attachment/3505260/+files/last-shutdown-lsof

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  Ext4 corruption associated with shutdown of Ubuntu 12.10

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Clint Byrum
I wonder if somehow dhclient is being added to omitpids.

If you edit /etc/init.d/sendsigs, and uncomment the '#report_unkillable'
on line 132,  then reproduce agian. Then look in /var/crash for apport
reports mentioning dhclient. If there are some, then its being added to
the list of pids the system is not allowed to kill, but whatever has
added it has not managed it properly.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Russell Faull
Clint, I have tried what you suggested (uncomment line 132 at
/etc/init.d/sendsig), and caused an unclean shutdown by checking
'Available to all users' for current NM connection. On reboot, there was
no mention of dhclient in /var/crash.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread jim warner
I use wireless exclusively and tried the following combinations but
NEVER achieved a clean shutdown.

   available to all (3 users) ---
1. autoconnect, connected @ shutdown

   available to single user -
2. autoconnect, connected @ shutdown
3. autoconnect, disconnected before shut
4. manually connected, disconnected before shut
5. networking + wireless enabled, but never connected
6. disabled networking, never connected
7. disabled wireless+networking, never connected

My lsof log #1 mentions dhclient as others have. My logs #5 - 7 contain
no suspect programs.  But my logs #1 - 4 also implicate dnsmasq.

I've included the logs from attempt #4 and 7 for what they're worth.


** Attachment added: disconnect wireless before shutdown
   
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1073433/+attachment/3505332/+files/last-shutdown-lsof.4

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread jim warner
and here's # 7...


** Attachment added: everything disabled, never connected and still unclean 
shutdown
   
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1073433/+attachment/3505333/+files/last-shutdown-lsof.7

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread Russell Faull
@Jim Warner, does your suggestion at #10 still work for you. It works
for me, if I unckeck all connections, wired, wireless and mobile.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-28 Thread jim warner
@Russell Faull, sadly no.  That hasn't worked for me since the problem
recurred (a few weeks ago, as I recall).

Fedora (spherical cow) is looking better and better...

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-27 Thread Ernie 07
This bug STILL occurs in 64 bit 1304 (Raring) with kernel 3.8.0-2-generic.
Downloaded and tested today 2013-01_27

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-27 Thread Francisco Reverbel
The thing actually got worse in Quantal, as the workaround become ineffective 
after a recently update. Now fsck runs on each and every boot, even if Enable 
Networking is unchecked before shutdown.
 
Is anybody else seeing this behavior?

This is the Quantal kernel I am currently running:

$ uname -a
Linux skinny 3.5.0-22-generic #34-Ubuntu SMP Tue Jan 8 21:47:00 UTC 2013 x86_64 
x86_64 x86_64 GNU/Linux

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-27 Thread Russell Faull
Does anyone else see two lines about 'hub_port_status failed error
(-110)'  just before shutdown and immediately following 'mount: / is
busy'? These errors always occur on several computers using different
filesystems. (None of the workarounds mentioned above or in bug #1061639
resolve the problem of fsck/log replay on next boot.)

Is there a way to kill all usb processes before shutdown to try and
determine if the usb system is interfering with the clean unmount of the
filesystem?

I'm using kernel 3.5.0-23-generic #35-Ubuntu SMP Thu Jan 24 13:05:29 UTC
2013 i686 i686 i686 GNU/Linux

This may need a separate bug report, if the usb system is a possible
cause and other filesystems also run fsck/log replay.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-27 Thread jim warner
I agree that this has gotten worse recently and occurs on every boot.

That, along with the apparent lack of 'interest in/progress on' a
solution has really affected my opinion of Ubuntu and confidence in
quantal.

My kernel:
3.5.0-22-generic #34-Ubuntu SMP Tue Jan 8 21:47:00 UTC 2013 x86_64 x86_64 
x86_64 GNU/Linux

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-27 Thread Ernie 07
Considering the published intention to have some form of 13.04 running
on a Nexus7, I would say that it is FANTASY to expect much to be fixed
in 12.10 with the exception of fixes to 13.04 that can be directly
backported to 12.10.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-19 Thread Russell Faull
This bug should be generalised to other file systems. It occurs using
xfs and jfs, as well as ext4. In my experience the fs is not relevant,
except some recover from an unclean shutdown better than others. (It's
easy to try different file systems using fsarchiver, don't forget to
change fstab to the new fs before reboot.)

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-18 Thread Richard Samson
Since one week this issue have occured again.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-18 Thread Ernie 07
Richard,

This bug exists in 12.10 and 13.04.

In order to avoid file system corruption while using 12.10 or 13.04, you
MUST disable networking before:

1. A system crash (if you have Nvidia hardware, this will be IMPOSSIBLE due to 
extremely poor drivers).
2. An orderly shutdown/restart.

Another option is to boycott 12.10 and 13.04 until the problem is
resolved.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-15 Thread Ernie 07
This bug STILL occurs in 64 bit 1304 (Raring) with kernel 3.8.0-0-generic.
Downloaded and tested yesterday 2013-01_14

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-08 Thread Richard Samson
Issue have disappeared since one month on a new installation of Raring
13.04.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-04 Thread Joseph Salisbury
Add upstart task for Ubuntu.

** Also affects: upstart (Ubuntu)
   Importance: Undecided
   Status: New

** Changed in: upstart (Ubuntu)
   Importance: Undecided = High

** Changed in: linux (Ubuntu)
   Status: Confirmed = Incomplete

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-04 Thread Joseph Salisbury
Has anyone affected by this bug had a chance to test 13.04(Raring)?  It
would be good to know if this issue exists there as well, or if it is
limited to 12.10.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2013-01-04 Thread Launchpad Bug Tracker
Status changed to 'Confirmed' because the bug affects multiple users.

** Changed in: upstart (Ubuntu)
   Status: New = Confirmed

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-12-26 Thread Daniel J Blueman
@Joseph

I've tested with various v3.6 and v3.7 mainline kernel, along with
Ubuntu kernels, all with defaults mount options; I still observe unclean
filesystem messages:

$ dmesg
...
EXT4-fs (sda2): INFO: recovery required on readonly filesystem
EXT4-fs (sda2): write access will be enabled during recovery
...
EXT4-fs (sda2): recovery complete

Users users likely mis-correlate NetworkManager as the issue, since it
changes the upstart race condition timing; most likely, this is an
upstart issue, as I believe the kernel has the correct behaviour, thus
it would be inappropriate to add the kernel-bug-exists-upstream tag.

What's next?

** Changed in: linux (Ubuntu)
   Status: Incomplete = Confirmed

** Tags removed: needs-upstream-testing

** Also affects: upstart
   Importance: Undecided
   Status: New

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-12-26 Thread Daniel J Blueman
We need to remove the network-manager project association, as it is just
circumstantial.

** Changed in: network-manager (Ubuntu)
   Status: Confirmed = Invalid

** Changed in: upstart
   Status: New = Confirmed

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-12-14 Thread Ernie 07
The workaround of disabling networking becomes unavailable EACH time
POORLY maintained Nvidia drivers randomly cause 12.10 to crash requiring
a power cycle to recover.

Will this BUG be fixed before 13.04 or should I AVOID 12.10 and continue
to use 12.04?

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-20 Thread xavier vilajosana
I'm facing the same problem. Then I've read that by disabling networking
before turning off the computer the problem disappears, however, after
two days of turning turning off networking service and everything
working fine, I've ran in the same issue, even having disabled
networking.

I am using gnome-shell and I don't have a button to disable networking but I 
switch the service off instead 
sudo service networking stop
right before shutting down the system.

several errors appear when I stop the networking service:

1-gnome-shell crashes and I lose the window borders including buttons to close 
them.
2-Also the top bar disappears and hence I need to stop the machine by
sudo shutdown now.

this process fails when trying to stop services and logs me in into a root 
terminal.
to stop the machine I have to

reboot now

and turn off the machine manually when in starts.

It is becoming urgent to solve that issue as every 2 days I need to boot
with a usb drive and force a superblock correction using that tutorial.

http://www.cyberciti.biz/faq/recover-bad-superblock-from-corrupted-
partition/

I've been using Ubuntu since 7.04 and I am at one step to completely
switch to another O.S. I cannot work with so much problems.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-16 Thread Launchpad Bug Tracker
Status changed to 'Confirmed' because the bug affects multiple users.

** Changed in: network-manager (Ubuntu)
   Status: New = Confirmed

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-14 Thread Francisco Reverbel
I ran into this bug and confirm it that the suggested workaround is
effective. The problem does not show up if I uncheck Enable Networking
before shutting the system down.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-13 Thread Joseph Salisbury
** Also affects: network-manager (Ubuntu)
   Importance: Undecided
   Status: New

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-05 Thread misiu_mp
To clarify as it is not completely apparent from the above discussion:
The repairs reported by fsck are not caused by corruption, but are harmless and 
purely cosmetic fixes. The reason is that to avoid performance bottlenecks, 
ext4 does not update the superblock after each inode or block (de)allocation. 
This is done on (clean) unmount instead and only to make it look good. The 
filesystem does not rely on this information.
The real bug is of course ubuntu not shutting down cleanly, and thus not 
performing the umount.

Then again if this is not an error in the fs, then maybe fsck shouldn't
prevent the system from cleanly booting.

Theodore Ts'o take on it:
https://plus.google.com/117091380454742934025/posts/JmpczpdwgrQ

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-05 Thread misiu_mp
Hmm, somehow I missed that the actual Theodore Ts'o already commented on
this here. Oops.

Still though , if this is not an error in the fs, then fsck shouldn't
prevent the system from cleanly booting.

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  Ext4 corruption associated with shutdown of Ubuntu 12.10

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-05 Thread Ernie 07
I have attempted to focus on a repeatable error condition.  Essentially,
a fsck via an alternate copy of Ubuntu would ALWAYS produce errors
following simple behavior.  Boot, logon, shutdown.

If I keep the Enable Network option unchecked, the error NEVER occurs.
Therefore it seems reasonable to conclude that networking functionally
is broken.

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  Ext4 corruption associated with shutdown of Ubuntu 12.10

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-02 Thread Luis Alvarado
Might this have to do with anything relating to NetworkManager not
connecting automatically or not detecting any connections until I
disable the Enable Networking option, wait a couple of seconds and
enable it again. Same for Wireless.

Tested just in case it has something to do with it with Intel LAN Wired
connections (Motherboards Intel DP35DP and Intel DZ68DB) and with
Linksys WMP300N, Linksys WMP600 and Realtek Gigalan (Forgot model). All
of them I need to reset the network like I mentioned above.

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  Ext4 corruption associated with shutdown of Ubuntu 12.10

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-01 Thread Joseph Salisbury
** Changed in: linux (Ubuntu)
   Importance: Critical = High

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  Ext4 corruption associated with shutdown of Ubuntu 12.10

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-01 Thread Bernd Schubert
Ernie, I see a lot of log files here, but somehow e2fsck logs seem to be 
missing. Any chance you have captured e2fsck messages or could recreate those? 
And I entirely agree with you, in my opionion just updating a recent stable 
kernel  to a development version is not a real solution.

Thanks,
Bernd

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-01 Thread Ernie 07
When I checked /var/log/fsck, the two files appear unchanged from the
original distribution on both the 12.10 and 12.04 OS's.  I have attached
a screenshot of the fsck output in case that would be helpful

** Attachment added: Screenshot of fsck output
   
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/1073433/+attachment/3420896/+files/FSCK_Output_2012-11-01%2011%3A15%3A21.png

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-01 Thread Christian Niemeyer
Filesystem corruption after shutdown with a clean standard installation.
100% confirmation. 100% reproducable.

But I guess it's not ext4 related. It's a dbus/networking problem with
the shutdown scripts. However nobody fixed it. Though it was still
reported. Busy filesystem, busy scripts, unclean shutdown. Everytime.

My system: AMD64, wired Networking (forcedeth). Again, I think it's a
dbus/networking/shutdown/upstart/initscripts problem. It get's triggered
for some people. And it doesn't get triggered for others. That's the
strange part about it.

References:
https://bugs.launchpad.net/ubuntu/+source/ifupdown/+bug/1061639
https://bugs.launchpad.net/ubuntu/+source/network-manager/+bug/1058987 (it say 
'Fix released', but I doubt it honestly.)

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-01 Thread Christian Niemeyer
Shutdown filesystem corruption in 12.10 stops for me after doing:  sudo
apt-get remove --purge dnsmasq-base resolvconf wpasupplicant isc-dhcp-
client isc-dhcp-common libnm-glib-vpn1 libnm-glib4 libnm-gtk-common
libnm-gtk0 libnm-util2 network-manager network-manager-gnome ubuntu-
minimal ntp plymouth-label plymouth-theme-lubuntu-logo plymouth-theme-
lubuntu-text plymouth-theme-ubuntu-text mobile-broadband-provider-info
blueman bluez lubuntu-core lubuntu-desktop modemmanager obex-data-server
ppp pppconfig pppoeconf rfkill wvdial mlocate

(I guess mandatory are dnsmasq-base, resolconf, isc-dhcp-*, network-
manager-*)

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-01 Thread jim warner
I too have had this problem since upgrading (not fresh installing)
12.10.

Under my wireless connection, when I uncheck available to all users,
for each of several users, I am able to shutdown cleanly.

Of course, upon reboot the available, not connected and then
connected messages are a bit anoying.

I hope my experience may provide additional clues to this bugs ultimate
demise.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-01 Thread Daniel J Blueman
This looks to be the same issue as I was experiencing during 12.10
development:

http://old.nabble.com/ext4-recovery-deleted-orphans-on-
reboot...-td34475175.html

Journal recovery occurs 100% of the time; list of orhpan inodes
presumably depends on the amount of unlinking in the last 5 seconds
before shutdown. Oddly enough, I don't observe this on my work desktop
running Ubuntu 12.10, but I do see this on three laptops - also with
Ubuntu 12.04. I'll double-check this.

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  Ext4 corruption associated with shutdown of Ubuntu 12.10

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-01 Thread Theodore Ts'o
Those specific fsck corrections --- fixing the number of free blocks and
the number of free inodes --- is completely normal and is purely a
cosmetic issue.   There is nothing to worry about here.

What is going on is that ext4 no longer updates the superblock after
every block and inode allocation; that causes a wasteful write cycle to
the superblock at every single journal commit, and it also is a SMP
scalability bottleneck for larger servers (i.e., with 32 or 64 CPU's).
To fix this, we no longer update these values in the superblock at every
commit.  Instead, we only update these values when we unmount the file
system, mainly for cosmetic purposes so that dumpe2fs shoes the correct
number of free inodes and blocks, and at mount time we calculate the
total number of free blocks and inodes in the file system by summing the
the free blocks/inodes statistics for each block group.  So in fact,
ext4 does not depend on the correctness of the values in the superblock,
but it does try to update them on a clean unmount.

In e2fsprogs commit id 2788cc879bbe6, which is in e2fsprogs 1.42. 3 and
newer, we changed things so that e2fsck -n would not display this as
something wrong.   However, we still do show this as something that we
fix when running e2fsck -y or -p, since in fact it is a change to the
file systems.   See:
http://git.kernel.org/?p=fs/ext2/e2fsprogs.git;a=commit;h=2788cc879bbe667d28277e1d660b7e56514e5b30

No one else has complained or noticed up until now,  because other
distro's apparently are capable of doing a clean shutdown allowing the
file system to be unmounted cleanly.  Ubuntu, unfortunately, is
incapable of reliably doing a clean shutdown even when users request it,
which is why Ubuntu users are seeing this behavior much more frequently,
and apparently some people have panicked as a result.   Sigh

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-01 Thread Ernie 07
For my environment (Ethernet DSL to Internet) a temporary workaround
follows:

1. UNCHECK Enable Networking
2. Wait until after the disconnected message goes away
3. Restart and Shutdown
4. Fsck from an alternate installation will NOT throw any errors.

Apparently Unchecking Enable Networking does something that a simple
restart or shutdown does NOT in terms of preparing for a SAFE shutdown.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-11-01 Thread Daniel J Blueman
Ok, I found this also on older desktops with rotational disks (all the
four ones mentioned have SSDs) running Ubuntu 12.04.1.

As Ted points out, it looks like Ubuntu (Upstart?) has issues with
shutdown, but could there be a race exposed by the superb speed that
Upstart is executing the umount/remount-ro, disk-cache-flush and kernel-
reboot vector sequence?

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  Ext4 corruption associated with shutdown of Ubuntu 12.10

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-10-31 Thread Brad Figg
** Changed in: linux (Ubuntu)
   Status: New = Confirmed

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-10-31 Thread Joseph Salisbury
Would it be possible for you to test the latest upstream kernel?  Refer
to https://wiki.ubuntu.com/KernelMainlineBuilds . Please test the latest
v3.7 kernel[0] (Not a kernel in the daily directory) and install both
the linux-image and linux-image-extra .deb packages.

Once you've tested the upstream kernel, please remove the 'needs-
upstream-testing' tag.  Please only remove that one tag and leave the
other tags. This can be done by clicking on the yellow pencil icon next
to the tag located at the bottom of the bug description and deleting the
'needs-upstream-testing' text.

If this bug is fixed in the mainline kernel, please add the following
tag 'kernel-fixed-upstream'.

If the mainline kernel does not fix this bug, please add the tag:
'kernel-bug-exists-upstream'.

If you are unable to test the mainline kernel, for example it will not boot, 
please add the tag: 'kernel-unable-to-test-upstream'.  
Once testing of the upstream kernel is complete, please mark this bug as 
Confirmed.


Thanks in advance.

[0] http://kernel.ubuntu.com/~kernel-ppa/mainline/v3.7-rc2-raring/


** Changed in: linux (Ubuntu)
   Importance: Undecided = High

** Changed in: linux (Ubuntu)
   Status: Confirmed = Incomplete

** Changed in: linux (Ubuntu)
   Importance: High = Critical

** Tags added: kernel-da-key needs-upstream-testing

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-10-31 Thread Joseph Salisbury
Set importance to critical due to possible corruption.

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-10-31 Thread Joseph Salisbury
Are you using any Non-default mount options?

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[Bug 1073433] Re: Ext4 corruption associated with shutdown of Ubuntu 12.10

2012-10-31 Thread Ernie 07
In an effort to KISS and minimize regression testing, I reported a 100%
repeatable bug.  In my haste, I failed to indicate that the source iso
used burn the LiveCD was the 64-bit version of Ubuntu 12.10 which was
recently released to the public. After running the installation under
the Try Ubuntu path, I performed a shutdown followed by a reboot of an
alternate version (12.04) of Ubuntu. A fsck -vf of the recently
installed (12.10) indicated problems and I followed the prompts to
repair the Ext4 file system.

Acronis True Image Home 2013 was used to create an image which could be
restored quickly.

To create the problem, I booted (12.10), logged in, waited a while
(sometimes a few minutes) and then performed a shutdown followed by a
reboot of an alternate version (12.04) of Ubuntu. A fsck -vf of the
recently installed (12.10) indicated problems and I followed the prompts
to repair the Ext4 file system.

It would seem to me that critical data can be obtained from a 100%
repeatable problem in a known environment.  The symptoms might be
masked in a different version of the kernel although the problem still
exists.

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