[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-11-11 Thread Mathew Hodson
** Changed in: akonadi (Ubuntu)
Milestone: ubuntu-15.04 => None

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-10-23 Thread Piotr Kęplicz
I've had similar problems. It seems to me that the default Akonadi
options for MySQL include a table_cache parameter, but it's been
deprecated since 5.1 and in 5.6 prevents a start of the database.
Removing this options did the trick for me.

In MariaDB documentation there's a remark that "all versions of MariaDB
are based on MySQL 5.1 and greater, thus the table_cache option is
deprecated in favor of table_open_cache."

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-05-03 Thread O. Sinclair
# 22 works perfectly for me on 14.10 and makes all KDEPIM snappier:

I have another solution:
- 1st i run update:
sudo aptitude update
when it is done then:
sudo aptitude purge mysql-server-core-5.6 mysql-client-core-5.6
aptitute will tell it has many dependencies, many packages will be removed ... 
so it asks if i accept that solution - choose no (n)
then it will propose installing:

1) mariadb-client-core-10.0 [10.0.17-0ubuntu1 (vivid)]
2) mariadb-common [10.0.17-0ubuntu1 (vivid)]
3) mariadb-server-core-10.0 [10.0.17-0ubuntu1 (vivid)]

- if you accept this - mysql will be removed, mariadb (fork of mysql)
will be installed, and akonadi will start without any issues.

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-05-02 Thread Mikael Bergqvist
Last part of my comment disappeared:

Removing the two files made it possible to restart akonadi and get Kmail
(and other) working again.

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-05-02 Thread Mikael Bergqvist
Did as Viktor Rasmussen suggested above. and removed the two files: 
~/.local/share/akonadi/db_data/ib_logfile0
and ~/.local/share/akonadi/db_data/ib_logfile1

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-29 Thread Angel
Finally the workaround proposed by #10 (delete ~/.local/share/akonadi)
solved the problem for me. Everything is OK now with akonadi, Kontact
and MySql.

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-28 Thread Félim Whiteley
I can confirm the fix worked for me was to change from mysql to maria DB
as per

https://bugs.launchpad.net/ubuntu/+source/akonadi/+bug/1445383/comments/3

Everything started up correctly after it installed mariadb. Thanks
folks.

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-26 Thread Angel
1. Initially mysqld-akonadi  could not start because of an error
described as:

   TIMESTAMP with implicit DEFAULT value is deprecated. Please
use --explicit_defaults_for_timestamp server option

2. In order to prevent that error,  I  modified the MySQL server
configuration, adding the next lines to the file /etc/akonadi/mysql-
global.conf:

   explicit_defaults_for_timestamp=1

3. After that, MySQL server starts correctly , but the problem is still
there: the Akonadi server does not start up and the control process is
not registered at D-Bus (errors in tests 10 and 11)

4. In fact, the akonadi server could not startup because of the next
error:

Sql error: Table 'akonadi.schemaversiontable' doesn't exist QMYSQL: 
Unable to execute query
Query: ALTER TABLE SchemaVersionTable ADD COLUMN version INTEGER NOT 
NULL DEFAULT 0 
Unable to initialize database. 

5. Solutions #11 and #20 do not solve the problem for me.

6. Below you will find the Akonadi Server Self-Test Report:

Akonadi Server Self-Test Report
===

Test 1:  SUCCESS


Database driver found.
Details: The QtSQL driver 'QMYSQL' is required by your current Akonadi server 
configuration and was found on your system.

File content of '/home/angel/.config/akonadi/akonadiserverrc':
[%General]
Driver=QMYSQL

[QMYSQL]
Name=akonadi
Host=
Options=UNIX_SOCKET=/tmp/akonadi-angel.D28OlA/mysql.socket
ServerPath=/usr/sbin/mysqld-akonadi
StartServer=true

[Debug]
Tracer=null


Test 2:  SUCCESS


Akonadi is not running as root
Details: Akonadi is not running as a root/administrator user, which is the 
recommended setup for a secure system.

Test 3:  SUCCESS


MySQL server found.
Details: You have currently configured Akonadi to use the MySQL server 
'/usr/sbin/mysqld-akonadi'.
Make sure you have the MySQL server installed, set the correct path and ensure 
you have the necessary read and execution rights on the server executable. The 
server executable is typically called 'mysqld'; its location varies depending 
on the distribution.

Test 4:  SUCCESS


MySQL server is executable.
Details: MySQL server found: /usr/sbin/mysqld  Ver 5.6.24-0ubuntu2 for 
debian-linux-gnu on i686 ((Ubuntu))


Test 5:  SUCCESS


No current MySQL error log found.
Details: The MySQL server did not report any errors during this startup. The 
log can be found in '/home/angel/.local/share/akonadi/db_data/mysql.err'.

Test 6:  SUCCESS


MySQL server default configuration found.
Details: The default configuration for the MySQL server was found and is 
readable at a 
href='/etc/akonadi/mysql-global.conf'/etc/akonadi/mysql-global.conf/a.

File content of '/etc/akonadi/mysql-global.conf':
#
# Global Akonadi MySQL server settings,
# These settings can be adjusted using $HOME/.config/akonadi/mysql-local.conf
#
# Based on advice by Kris Köhntopp k...@mysql.com
#
[mysqld]

# strict query parsing/interpretation
# TODO: make Akonadi work with those settings enabled
# 
sql_mode=strict_trans_tables,strict_all_tables,strict_error_for_division_by_zero,no_auto_create_user,no_auto_value_on_zero,no_engine_substitution,no_zero_date,no_zero_in_date,only_full_group_by,pipes_as_concat
# sql_mode=strict_trans_tables

#agregado por mi:
explicit_defaults_for_timestamp=1

# DEBUGGING:
# log all queries, useful for debugging but generates an enormous amount of data
# log=mysql.full
# log queries slower than n seconds, log file name relative to datadir (for 
debugging only)
# log_slow_queries=mysql.slow
# long_query_time=1
# log queries not using indices, debug only, disable for production use
# log_queries_not_using_indexes=1
#
# mesure database size and adjust innodb_buffer_pool_size
# SELECT sum(data_length) as bla, sum(index_length) as blub FROM 
information_schema.tables WHERE table_schema not in (mysql, 
information_schema);

# NOTES:
# Keep Innob_log_waits and keep Innodb_buffer_pool_wait_free small (see show 
global status like inno%, show global variables)

#expire_logs_days=3

#sync_bin_log=0

# Use UTF-8 encoding for tables
character_set_server=utf8
collation_server=utf8_general_ci

# use InnoDB for transactions and better crash recovery
default_storage_engine=innodb

# memory pool InnoDB uses to store data dictionary information and other 
internal data structures (default:1M)
# Deprecated in MySQL = 5.6.3
innodb_additional_mem_pool_size=1M

# memory buffer InnoDB uses to cache data and indexes of its tables 
(default:128M)
# Larger values means less I/O
innodb_buffer_pool_size=80M

# Create a .ibd file for each table (default:0)
innodb_file_per_table=1

# Write out the log buffer to the log file at each commit (default:1)
innodb_flush_log_at_trx_commit=2

# Buffer size used to write to the log files on disk (default:1M for builtin, 
8M for plugin)
# larger values means less I/O
innodb_log_buffer_size=1M

# Size of each log file in a log group (default:5M) larger means less I/O but 
more time 

[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-24 Thread Johnny
I solved this issue.

This is what I did. 
- I deleted from folder .local/share/akonadi/
  - socket-(computername)
  - mysql.conf
- Start Akonadi server. 

= problem solved. Akonadi server started normal

Maybe this helps solving the problem.

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-24 Thread Christoph Rüßler
Comment #11 solved the problem for me, too. I ran into the bug
performing the following steps:

1. I upgraded Kubuntu from 14.10 to 15.04 using `sudo do-release-upgrade`.
2. I rebooted using `sudo reboot now` instead of using the K menu due to a bug 
that prevented me from rebooting via menu. According to the attached excerpt of 
mysql.err, mysqld was shutdown properly.
3. After rebooting, the crash appeared.

** Attachment added: mysql.err
   
https://bugs.launchpad.net/ubuntu/+source/mysql-5.6/+bug/1437846/+attachment/4383086/+files/mysql.err

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-23 Thread Launchpad Bug Tracker
Status changed to 'Confirmed' because the bug affects multiple users.

** Changed in: akonadi (Ubuntu)
   Status: New = Confirmed

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-22 Thread Jonathan Riddell
** Changed in: akonadi (Ubuntu)
Milestone: None = ubuntu-15.04

** Tags added: kubuntu

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-22 Thread Kai Michael Hamich
For me this does not solve the problem ...

Attached is my Akonadi-Log

** Attachment added: akonadi_err.txt
   
https://bugs.launchpad.net/ubuntu/+source/mysql-5.6/+bug/1437846/+attachment/4381482/+files/akonadi_err.txt

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-21 Thread Robie Basak
Seems to me that it's akonadi that is failing to shut mysqld down
properly when it is running 5.5 that is causing the issue - possibly
with lack of database migration to 5.6?

There's a separate crash bug in mysqld that should be fixed (it
shouldn't segfault no matter what really), but I'll add a task back for
akonadi as it is the akonadi package that needs to keep affairs in
~/.local/share/akonadi/ in order.

** Also affects: akonadi (Ubuntu)
   Importance: Undecided
   Status: New

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-21 Thread Robie Basak
To fix the crash bug in mysql-5.6 we need a minimal failure case (steps
to reproduce) really, so leaving that as Incomplete. The aknoadi
management of ~/.local/share/akonadi might be able to make progress
though if somebody who looks after akonadi packaging can look into that.

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-21 Thread Philip Muškovac
The Shutdown procedure is:

- run mysqladmin shutdown, wait 3 seconds (if mysqladmin exists, which on 
kubuntu isn't true by default as we only install mysql-client-core, not 
mysql-client)
- if server still runs, send SIGTERM to the server, wait another 3 seconds
- if server *still* runs, send SIGKILL

this is ofc. only true if the user properly logs out...

Regarding the database upgrade, mysql_upgrade is installed by default,
so that *should* work, as long as mysql takes care of that (akonadi
doesn't)

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-21 Thread Vasco Alves
Can confirm the above fix by Viktor works! Thanks a bunch!

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  akonadi mysql 5.6 crash with signal 11

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Re: [Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-21 Thread Robie Basak
On Tue, Apr 21, 2015 at 10:45:03AM -, Philip Muškovac wrote:
 Regarding the database upgrade, mysql_upgrade is installed by default,
 so that *should* work, as long as mysql takes care of that (akonadi
 doesn't)

AFAIK, mysql packaging will only touch /var/lib/mysql. If you have a
custom started daemon with a database elsewhere (which is what akonadi
appears to do), mysql packaging won't touch it. akonadi packaging will
need to take care of this.

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-20 Thread Viktor Rasmussen
So I have the same problem after an innocent apt-get dist-upgrade  today.

Have we lost all our emails in KMail because of this, or can something
be done to get it working again?

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-20 Thread Viktor Rasmussen
I removed the two files
~/.local/share/akonadi/db_data/ib_logfile0
and ~/.local/share/akonadi/db_data/ib_logfile1

Now Akonadi starts. And it seems no mails are lost

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-20 Thread Norvald H. Ryeng
In both error logs, I see this sequence (with varying timestamps and seq
numbers, of course):

2015-03-29 15:03:37 2265 [Note] InnoDB: The log sequence numbers 10740390801 
and 10740390801 in ibdata files do not match the log sequence number 
11404279789 in the ib_logfiles!
2015-03-29 15:03:37 2265 [Note] InnoDB: Database was not shutdown normally!
2015-03-29 15:03:37 2265 [Note] InnoDB: Starting crash recovery.

I think that's the core of the problem. 5.5 was not shut down properly
before upgrading, so it's left to 5.6 to try to recover. For some reason
it can't, and it crashes.

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-18 Thread Ray-Ven
workaround: delete ~/.local/share/akonadi
But do this which caution: your database will be lost. In my case all my 
kontact-related settings and accounts stayed, but all my email is being 
downloaded from imap again.

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-18 Thread Ray-Ven
I  have to add, that akonadi works on a fresh created user. But I'd love
to not have to recreate my whole akonadi settings (and, I don't know if
that will work too).

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-17 Thread Robie Basak
Thank you for taking the time to report this bug and helping to make
Ubuntu better.

I can't reproduce this. I tried installing akonadi-server and akonadi-
mysql-backend but that doesn't seem to cause anything to start. I am not
familiar with akonadi. Can someone please provide exact steps to
reproduce this issue on a fresh Vivid cloud instance?

** Changed in: mysql-5.6 (Ubuntu)
   Status: Confirmed = Incomplete

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-17 Thread themroc
Same here with mysqld 5.6.24-0ubuntu1

** Attachment added: mysql.err
   
https://bugs.launchpad.net/ubuntu/+source/mysql-5.6/+bug/1437846/+attachment/4378252/+files/mysql.err

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Title:
  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-17 Thread René Fritz
I can't say why, but it works again for me.

akonadi-backend-mysql is version 1.13.0-2ubuntu4
mysql* is 5.6.24-0ubuntu1

I had a second error which was caused by a wrong configuration (may was set by 
a package?)
/usr/sbin/mysqld-akonadi has to be used as mysql executable.
Check with akonadi console ServerConfigure Server

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  akonadi mysql 5.6 crash with signal 11

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[Bug 1437846] Re: akonadi mysql 5.6 crash with signal 11

2015-04-02 Thread Philip Muškovac
** Package changed: akonadi (Ubuntu) = mysql-5.6 (Ubuntu)

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Title:
  akonadi mysql 5.6 crash with signal 11

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