[OMPI users] openmpi-1.6.4 mpicc fails to compile hello_c.c

[Limin Gu]

Hi,

I have successfully built openmpi-1.6.3 and many previous openmpi versions
on both RHEL5 and RHEL6, for the new openmpi-1.6.4 I do the same configure,
make and install as before, but the resulting mpicc does not compile
hello_c.c.

I have PATH and LD_LIBRARY_PATH set correctly.

[root@tesla examples]# echo $LD_LIBRARY_PATH
/opt/scyld/openmpi/1.6.4/gnu/lib
[root@tesla examples]# which mpicc
/opt/scyld/openmpi/1.6.4/gnu/bin/mpicc
[root@tesla examples]# mpicc -o hello_c hello_c.c
/tmp/ccuZg1I9.o: In function `main':
hello_c.c:(.text+0x1d): undefined reference to `ompi_mpi_comm_world'
hello_c.c:(.text+0x2b): undefined reference to `ompi_mpi_comm_world'
collect2: ld returned 1 exit status
[root@tesla examples]#

But mpicxx does compile:
[root@tesla examples]# which mpicxx
/opt/scyld/openmpi/1.6.4/gnu/bin/mpicxx
[root@tesla examples]# mpicxx -o hello_cxx hello_cxx.cc
[root@tesla examples]#

Any idea about what is wrong here? I have the same error on both RHEL5 and
RHEL6 systems.

Thank you!

Limin

Re: [OMPI users] openmpi-1.6.4 mpicc fails to compile hello_c.c

[Limin Gu]

Hi Jeff and Reuti, thank you for your responds.

"ldd hello_cxx" gave me some clue, and I found it was linked to some mpich
library which was installed under/usr/lib64. When I removed mpich
libraries, and recompile, everything includes mpicc and mpirun worked fine.

I didn't have that problem with eariler openmpi versions like 1.6.x and
1.5.x. I would like to keep mpich libraries on the system, is there any
confiure option I can use to make 1.6.4 library link the same as 1.6.3?

Thanks again!
Limin

On Thu, Mar 7, 2013 at 9:34 AM, Jeff Squyres (jsquyres)
wrote:

> On Mar 7, 2013, at 9:31 AM, Reuti  wrote:
>
> >> [root@tesla examples]# echo $LD_LIBRARY_PATH
> >> /opt/scyld/openmpi/1.6.4/gnu/lib
> >> [root@tesla examples]# which mpicc
> >> /opt/scyld/openmpi/1.6.4/gnu/bin/mpicc
> >> [root@tesla examples]# mpicc -o hello_c hello_c.c
> >> /tmp/ccuZg1I9.o: In function `main':
> >> hello_c.c:(.text+0x1d): undefined reference to `ompi_mpi_comm_world'
> >> hello_c.c:(.text+0x2b): undefined reference to `ompi_mpi_comm_world'
> >
> > What is the output if you compile in addition with -v (verbose)?
>
> Also, what's the output if you use --showme?  I'd like to see the
> underlying command that is being used.
>
> When you successfully compile/link hello_cxx, what does "ldd hello_cxx"
> show?
>
> --
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
>
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Re: [OMPI users] openmpi-1.6.4 mpicc fails to compile hello_c.c

[Limin Gu]

On Thu, Mar 7, 2013 at 4:01 PM, Jeff Squyres (jsquyres)
wrote:

>
> This doesn't sound right -- I don't think we changed how linking worked in
> 1.6.3 and 1.6.4.
>
> Are you sure that, on that same machine with MPICH installed in
> /usr/lib64, you're also able to compile/link/use 1.6.3 properly?
>

Yes, on the same system, 1.6.3 openmpi works with MPICH installed in
/usr/lib64

>
> A wild guess: you have some kind of linker configuration that is putting
> /usr/lib64 ahead of -L-specified paths on the compiler command line.
>
> On the same system,
with 1.6.3:
[root@tesla examples]# mpicc --showme hello_c.c
gcc hello_c.c -I/opt/scyld/openmpi/1.6.3/gnu/include -pthread
-L/opt/scyld/openmpi/1.6.3/gnu/lib -lmpi -libverbs -ldat -lrt -lnsl -lutil
-lm -ltorque -lm -lnuma -lrt -lnsl -lutil -lm
[root@tesla examples]#

With 1.6.4:
[root@tesla examples]# mpicc --showme hello_c.c
gcc hello_c.c -I/opt/scyld/openmpi/1.6.4/gnu/include -pthread -L/usr/lib64
-Wl,-rpath -Wl,/usr/lib64 -L/opt/scyld/openmpi/1.6.4/gnu/lib -lmpi
-libverbs -ldat -lrt -lnsl -lutil -lm -ltorque -lm -lnuma -lrt -lnsl -lutil
-lm
[root@tesla examples]#

So indeed, for 1.6.4, the linker is putting /usr/lib64 ahead of openmpi
library path, but I don't know why.
I used the same configure options when I did these builds. I didn't change
linker configuration from 1.6.3 to 1.6.4 either, the only difference I can
tell is the openmpi source code.

Thank you!

Limin


--
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
>
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Re: [OMPI users] openmpi-1.6.4 mpicc fails to compile hello_c.c

[Limin Gu]

Thanks Jeff!
When I was trying to produce clean config.log files, I think I have found
what caused my problem.

Limin

On Thu, Mar 7, 2013 at 5:42 PM, Jeff Squyres (jsquyres)
wrote:

>
> Huh!  This is surprising.
>
> Can you send me the config.log from each of your 1.6.3 and 1.6.4 builds?
>
> --
> Jeff Squyres
> jsquy...@cisco.com
> For corporate legal information go to:
> http://www.cisco.com/web/about/doing_business/legal/cri/
>
>
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[OMPI users] openmpi-1.7 failed to build on Centos 6.4

[Limin Gu]

Hi all,

I downloaded openmpi-1.7, but it failed to build on Centos 6.4 with
following error:

make[10]: Entering directory
`/root/openmpi/openmpi-1.7/ompi/contrib/vt/vt/extlib/otf/tools/otfmerge/mpi'
  CC   otfmerge_mpi-handler.o
  CC   otfmerge_mpi-otfmerge.o
  CCLD otfmerge-mpi
/root/openmpi/openmpi-1.7/ompi/contrib/vt/vt/../../../.libs/libmpi.so:
undefined reference to `opal_memory_linux_malloc_init_hook'
collect2: ld returned 1 exit status
make[10]: *** [otfmerge-mpi] Error 1


And this is my configure options:

 ./configure --with-udapl --with-tm --with-openib --disable-dlopen
--without-slurm --without-mx --without-lsf --without-loadleveler
--without-memory-manager --with-memory-manager=no --with-psm CC=gcc CXX=g++
F77=gfortran FC=gfortran

Thank you!

Limin

Re: [OMPI users] openmpi-1.7 failed to build on Centos 6.4

[Limin Gu]

Thanks Ralph!
After I removed  --without-memory-manager  --with-memory-manager=no, it
built fine.

Limin


On Thu, Apr 4, 2013 at 3:26 PM, Ralph Castain <r...@open-mpi.org> wrote:

> Fix is coming - it is the --without-memory-manager option (which is the
> same thing as --with-memory-manager=no) that is breaking it.
>
>
> On Apr 4, 2013, at 12:19 PM, Limin Gu <l...@penguincomputing.com> wrote:
>
> > Hi all,
> >
> > I downloaded openmpi-1.7, but it failed to build on Centos 6.4 with
> following error:
> >
> > make[10]: Entering directory
> `/root/openmpi/openmpi-1.7/ompi/contrib/vt/vt/extlib/otf/tools/otfmerge/mpi'
> >   CC   otfmerge_mpi-handler.o
> >   CC   otfmerge_mpi-otfmerge.o
> >   CCLD otfmerge-mpi
> > /root/openmpi/openmpi-1.7/ompi/contrib/vt/vt/../../../.libs/libmpi.so:
> undefined reference to `opal_memory_linux_malloc_init_hook'
> > collect2: ld returned 1 exit status
> > make[10]: *** [otfmerge-mpi] Error 1
> >
> >
> > And this is my configure options:
> >
> >  ./configure --with-udapl --with-tm --with-openib --disable-dlopen
> --without-slurm --without-mx --without-lsf --without-loadleveler
> --without-memory-manager --with-memory-manager=no --with-psm CC=gcc CXX=g++
> F77=gfortran FC=gfortran
> >
> > Thank you!
> >
> > Limin
> >
> > ___
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> > us...@open-mpi.org
> > http://www.open-mpi.org/mailman/listinfo.cgi/users
>
>
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[OMPI users] openmpi-2.0.1 build error: multiple definition of `pmi_opcaddy_t_class'

[Limin Gu]

Hi,

I have openmpi-2.0.1 same build error on Centos 6.8 and Centos 7.2,
Any idea what might have caused this problem?

Thank you!

make[2]: Entering directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'

  CC   class/opal_bitmap.lo

  CC   class/opal_free_list.lo

  CC   class/opal_hash_table.lo

  CC   class/opal_hotel.lo

  CC   class/opal_tree.lo

  CC   class/opal_list.lo

  CC   class/opal_graph.lo

  CC   class/opal_object.lo

  CC   class/opal_lifo.lo

  CC   class/opal_fifo.lo

  CC   class/opal_pointer_array.lo

  CC   class/opal_value_array.lo

  CC   class/opal_ring_buffer.lo

  CC   class/opal_rb_tree.lo

  CC   errhandler/opal_errhandler.lo

  CC   memoryhooks/memory.lo

  CC   runtime/opal_progress.lo

  CC   runtime/opal_finalize.lo

  CC   runtime/opal_init.lo

  CC   runtime/opal_params.lo

  CC   runtime/opal_info_support.lo

  CC   runtime/opal_progress_threads.lo

  CC   threads/condition.lo

  CC   threads/mutex.lo

  CC   threads/thread.lo

  CC   threads/wait_sync.lo

  CC   dss/dss_internal_functions.lo

  CC   dss/dss_compare.lo

  CC   dss/dss_copy.lo

  CC   dss/dss_dump.lo

  CC   dss/dss_load_unload.lo

  CC   dss/dss_lookup.lo

  CC   dss/dss_pack.lo

  CC   dss/dss_peek.lo

  CC   dss/dss_print.lo

  CC   dss/dss_register.lo

  CC   dss/dss_unpack.lo

  CC   dss/dss_open_close.lo

  CCLD libopen-pal.la

mca/pmix/s1/.libs/libmca_pmix_s1.a(libmca_pmix_s1_la-pmix_s1.o):(.data.rel+0x0):
multiple definition of `pmi_opcaddy_t_class'

mca/pmix/s2/.libs/libmca_pmix_s2.a(libmca_pmix_s2_la-pmix_s2.o):(.data.rel+0x0):
first defined here

collect2: ld returned 1 exit status

make[2]: *** [libopen-pal.la] Error 1

make[2]: Leaving directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'

make[1]: *** [all-recursive] Error 1

make[1]: Leaving directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'

make: *** [all-recursive] Error 1

error: Bad exit status from /var/tmp/rpm-tmp.EtuXQa (%build)



--

*Limin Gu*  | Software Engineer



*Penguin Computing*
45800 Northport Loop West
Fremont, CA 94 538

*p.*   *415.954.2800 <415.954.2800>*

*e.   *spars...@penguincomputing.com <lcorb...@penguincomputing.com>


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Re: [OMPI users] openmpi-2.0.1 build error: multiple definition of `pmi_opcaddy_t_class'

[Limin Gu]

Thanks Gilles!

I added "static" keyword as you suggested, the build succeeded.

Will this be fixed in later release?

Thanks again!


*Limin Gu*  | Software Engineer



*Penguin Computing*
45800 Northport Loop West
Fremont, CA 94 538

*p.*   *415.954.2800 <415.954.2800>*

*e.   *l...@penguincomputing.com


*Changing the world through technical innovation*


www.penguincomputing.com

www.penguincomputing.iapplicants.com

*Follow us on Twitter: @PenguinHPC*


On Tue, Sep 27, 2016 at 11:51 AM, Gilles Gouaillardet <
gilles.gouaillar...@gmail.com> wrote:

> Hi,
>
> I can see this error happening if you configure with --disable-dlopen
> --with-pmi
>
> In opal/mca/pmix/s?/pmix_s?.c, you can try to add the static keyword
> before
> OBJ_CLASS_INSTANCE(pmi_opcaddy_t, ...)
> Or you can update the files to use unique class name (probably safer...)
>
> Cheers,
>
> Gilles
>
> On Wednesday, September 28, 2016, Limin Gu <l...@penguincomputing.com>
> wrote:
>
>> Hi,
>>
>> I have openmpi-2.0.1 same build error on Centos 6.8 and Centos 7.2,
>> Any idea what might have caused this problem?
>>
>> Thank you!
>>
>> make[2]: Entering directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'
>>
>>   CC   class/opal_bitmap.lo
>>
>>   CC   class/opal_free_list.lo
>>
>>   CC   class/opal_hash_table.lo
>>
>>   CC   class/opal_hotel.lo
>>
>>   CC   class/opal_tree.lo
>>
>>   CC   class/opal_list.lo
>>
>>   CC   class/opal_graph.lo
>>
>>   CC   class/opal_object.lo
>>
>>   CC   class/opal_lifo.lo
>>
>>   CC   class/opal_fifo.lo
>>
>>   CC   class/opal_pointer_array.lo
>>
>>   CC   class/opal_value_array.lo
>>
>>   CC   class/opal_ring_buffer.lo
>>
>>   CC   class/opal_rb_tree.lo
>>
>>   CC   errhandler/opal_errhandler.lo
>>
>>   CC   memoryhooks/memory.lo
>>
>>   CC   runtime/opal_progress.lo
>>
>>   CC   runtime/opal_finalize.lo
>>
>>   CC   runtime/opal_init.lo
>>
>>   CC   runtime/opal_params.lo
>>
>>   CC   runtime/opal_info_support.lo
>>
>>   CC   runtime/opal_progress_threads.lo
>>
>>   CC   threads/condition.lo
>>
>>   CC   threads/mutex.lo
>>
>>   CC   threads/thread.lo
>>
>>   CC   threads/wait_sync.lo
>>
>>   CC   dss/dss_internal_functions.lo
>>
>>   CC   dss/dss_compare.lo
>>
>>   CC   dss/dss_copy.lo
>>
>>   CC   dss/dss_dump.lo
>>
>>   CC   dss/dss_load_unload.lo
>>
>>   CC   dss/dss_lookup.lo
>>
>>   CC   dss/dss_pack.lo
>>
>>   CC   dss/dss_peek.lo
>>
>>   CC   dss/dss_print.lo
>>
>>   CC   dss/dss_register.lo
>>
>>   CC   dss/dss_unpack.lo
>>
>>   CC   dss/dss_open_close.lo
>>
>>   CCLD libopen-pal.la
>>
>> mca/pmix/s1/.libs/libmca_pmix_s1.a(libmca_pmix_s1_la-pmix_s1.o):(.data.rel+0x0):
>> multiple definition of `pmi_opcaddy_t_class'
>>
>> mca/pmix/s2/.libs/libmca_pmix_s2.a(libmca_pmix_s2_la-pmix_s2.o):(.data.rel+0x0):
>> first defined here
>>
>> collect2: ld returned 1 exit status
>>
>> make[2]: *** [libopen-pal.la] Error 1
>>
>> make[2]: Leaving directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'
>>
>> make[1]: *** [all-recursive] Error 1
>>
>> make[1]: Leaving directory `/usr/src/redhat/BUILD/openmpi-2.0.1/opal'
>>
>> make: *** [all-recursive] Error 1
>>
>> error: Bad exit status from /var/tmp/rpm-tmp.EtuXQa (%build)
>>
>>
>>
>> --
>>
>> *Limin Gu*  | Software Engineer
>>
>> 
>>
>> *Penguin Computing*
>> 45800 Northport Loop West
>> Fremont, CA 94 538
>>
>> *p.*   *415.954.2800 <415.954.2800>*
>>
>> *e.   *spars...@penguincomputing.com
>>
>>
>> *Changing the world through technical innovation*
>>
>>
>> www.penguincomputing.com
>>
>> www.penguincomputing.iapplicants.com
>>
>> *Follow us on Twitter: @PenguinHPC*
>>
>
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[OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

[Limin Gu]

Hi All,

I am trying to build openmpi 2.0.1 on a CentOS 7.2 system, and I have
following libpsm2 packages installed:

libpsm2-0.7-4.el7.x86_64
libpsm2-compat-0.7-4.el7.x86_64
libpsm2-compat-devel-0.7-4.el7.x86_64
libpsm2-devel-0.7-4.el7.x86_64

I added --with-psm2 to my configure, but it failed:

--- MCA component mtl:psm2 (m4 configuration macro)
checking for MCA component mtl:psm2 compile mode... static
checking --with-psm2 value... simple ok (unspecified)
checking --with-psm2-libdir value... simple ok (unspecified)
checking psm2.h usability... yes
checking psm2.h presence... yes
checking for psm2.h... yes
looking for library without search path
checking for library containing psm2_mq_irecv2... no
configure: error: PSM2 support requested but not found.  Aborting
error: Bad exit status from /var/tmp/rpm-tmp.TLxu8O (%build)


/usr/lib64/libpsm2.so is on the system though.

What else libraries do I need for psm2?

Thank you!
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Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

[Limin Gu]

Hi MAC,

It seems /usr/lib64/libpsm2.so.2 has no symbols. Can configure check some
other ways?


[root@uranus ~]# rpm -qi libpsm2-0.7-4.el7.x86_64

Name: libpsm2

Version : 0.7

Release : 4.el7

Architecture: x86_64

Install Date: Tue 11 Oct 2016 05:45:59 PM PDT

Group   : System Environment/Libraries

Size: 400282

License : GPLv2 or BSD

Signature   : RSA/SHA256, Wed 25 Nov 2015 07:02:20 AM PST, Key ID
24c6a8a7f4a80eb5

Source RPM  : libpsm2-0.7-4.el7.src.rpm

Build Date  : Fri 20 Nov 2015 08:05:13 AM PST

Build Host  : worker1.bsys.centos.org

Relocations : (not relocatable)

Packager: CentOS BuildSystem <http://bugs.centos.org>

Vendor  : CentOS

URL : http://www.intel.com/

Summary : Intel PSM Libraries

Description :

The PSM Messaging API, or PSM API, is Intel's low-level

user-level communications interface for the Truescale

family of products. PSM users are enabled with mechanisms

necessary to implement higher level communications

interfaces in parallel environments.

[root@uranus ~]# objdump -p /usr/lib64/libpsm2.so.2 |grep SONAME

  *SONAME*   libpsm2.so.2

[root@uranus ~]# nm /usr/lib64/libpsm2.so.2

nm: /usr/lib64/libpsm2.so.2: no symbols

[root@uranus ~]#


Thanks!
Limin


On Tue, Oct 11, 2016 at 7:00 PM, Cabral, Matias A <matias.a.cab...@intel.com
> wrote:

> Hi  Limin,
>
>
>
> psm2_mq_irecv2 should be in libpsm2.so.  I’m not quite sure how CentOS
> packs it so I would like a little more info about the version being used.
> Some things to share:
>
>
>
> >rpm -qi libpsm2-0.7-4.el7.x86_64
>
> > objdump –p /usr/lib64/libpsm2.so |grep SONAME
>
> >nm /usr/lib64/libpsm2.so |grep psm2_mq_irecv2 (will not work if the lib
> Stripped)
>
>
>
>
>
> Thanks,
>
> _MAC
>
>
>
> *From:* users [mailto:users-boun...@lists.open-mpi.org] *On Behalf Of *Limin
> Gu
> *Sent:* Tuesday, October 11, 2016 2:58 PM
> *To:* Open MPI Users <users@lists.open-mpi.org>
> *Subject:* [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS
> 7.2
>
>
>
> Hi All,
>
> I am trying to build openmpi 2.0.1 on a CentOS 7.2 system, and I have
> following libpsm2 packages installed:
>
> libpsm2-0.7-4.el7.x86_64
> libpsm2-compat-0.7-4.el7.x86_64
> libpsm2-compat-devel-0.7-4.el7.x86_64
> libpsm2-devel-0.7-4.el7.x86_64
>
> I added --with-psm2 to my configure, but it failed:
>
> --- MCA component mtl:psm2 (m4 configuration macro)
> checking for MCA component mtl:psm2 compile mode... static
> checking --with-psm2 value... simple ok (unspecified)
> checking --with-psm2-libdir value... simple ok (unspecified)
> checking psm2.h usability... yes
> checking psm2.h presence... yes
> checking for psm2.h... yes
> looking for library without search path
> checking for library containing psm2_mq_irecv2... no
> configure: error: PSM2 support requested but not found.  Aborting
> error: Bad exit status from /var/tmp/rpm-tmp.TLxu8O (%build)
>
>
>
>
>
> /usr/lib64/libpsm2.so is on the system though.
>
>
>
> What else libraries do I need for psm2?
>
>
>
> Thank you!
>
>
>
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Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

[Limin Gu]

Thank you very much, MAC!

Limin




On Tue, Oct 11, 2016 at 10:15 PM, Cabral, Matias A <
matias.a.cab...@intel.com> wrote:

> Building psm2 should not be complicated (in case you cannot find a newer
> binary):
>
>
>
> https://github.com/01org/opa-psm2
>
>
>
> Note that newer rpm are named hfi1-psm*
>
>
>
>
>
> _MAC
>
>
>
> *From:* users [mailto:users-boun...@lists.open-mpi.org] *On Behalf Of *Limin
> Gu
> *Sent:* Tuesday, October 11, 2016 6:44 PM
> *To:* Open MPI Users <users@lists.open-mpi.org>
> *Subject:* Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on
> CentOS 7.2
>
>
>
> Thanks Gilles!
>
>
>
> Limin
>
>
>
> On Tue, Oct 11, 2016 at 9:33 PM, Gilles Gouaillardet <gil...@rist.or.jp>
> wrote:
>
> Limin,
>
>
>
> It seems libpsm2 provided by Centos 7 is a bit too old
>
> all symbols are prefixed with psm_, and Open MPI expect they are prefixed
> with psm2_
>
>
> i am afraid your only option is to manually install the latest libpsm2 and
> then configure again with your psm2 install dir
>
>
> Cheers,
>
> Gilles
>
>
>
> On 10/12/2016 9:57 AM, Limin Gu wrote:
>
> Hi MAC,
>
>
>
> It seems /usr/lib64/libpsm2.so.2 has no symbols. Can configure check some
> other ways?
>
>
>
>
>
> [root@uranus ~]# rpm -qi libpsm2-0.7-4.el7.x86_64
>
> Name: libpsm2
>
> Version : 0.7
>
> Release : 4.el7
>
> Architecture: x86_64
>
> Install Date: Tue 11 Oct 2016 05:45:59 PM PDT
>
> Group   : System Environment/Libraries
>
> Size: 400282
>
> License : GPLv2 or BSD
>
> Signature   : RSA/SHA256, Wed 25 Nov 2015 07:02:20 AM PST, Key ID
> 24c6a8a7f4a80eb5
>
> Source RPM  : libpsm2-0.7-4.el7.src.rpm
>
> Build Date  : Fri 20 Nov 2015 08:05:13 AM PST
>
> Build Host  : worker1.bsys.centos.org
>
> Relocations : (not relocatable)
>
> Packager: CentOS BuildSystem <http://bugs.centos.org>
>
> Vendor  : CentOS
>
> URL : http://www.intel.com/
>
> Summary : Intel PSM Libraries
>
> Description :
>
> The PSM Messaging API, or PSM API, is Intel's low-level
>
> user-level communications interface for the Truescale
>
> family of products. PSM users are enabled with mechanisms
>
> necessary to implement higher level communications
>
> interfaces in parallel environments.
>
> [root@uranus ~]# objdump -p /usr/lib64/libpsm2.so.2 |grep SONAME
>
>   *SONAME*   libpsm2.so.2
>
> [root@uranus ~]# nm /usr/lib64/libpsm2.so.2
>
> nm: /usr/lib64/libpsm2.so.2: no symbols
>
> [root@uranus ~]#
>
>
>
>
>
> Thanks!
>
> Limin
>
>
>
>
>
> On Tue, Oct 11, 2016 at 7:00 PM, Cabral, Matias A <
> matias.a.cab...@intel.com> wrote:
>
> Hi  Limin,
>
>
>
> psm2_mq_irecv2 should be in libpsm2.so.  I’m not quite sure how CentOS
> packs it so I would like a little more info about the version being used.
> Some things to share:
>
>
>
> >rpm -qi libpsm2-0.7-4.el7.x86_64
>
> > objdump –p /usr/lib64/libpsm2.so |grep SONAME
>
> >nm /usr/lib64/libpsm2.so |grep psm2_mq_irecv2 (will not work if the lib
> Stripped)
>
>
>
>
>
> Thanks,
>
> _MAC
>
>
>
> *From:* users [mailto:users-boun...@lists.open-mpi.org] *On Behalf Of *Limin
> Gu
> *Sent:* Tuesday, October 11, 2016 2:58 PM
> *To:* Open MPI Users <users@lists.open-mpi.org>
> *Subject:* [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS
> 7.2
>
>
>
> Hi All,
>
> I am trying to build openmpi 2.0.1 on a CentOS 7.2 system, and I have
> following libpsm2 packages installed:
>
> libpsm2-0.7-4.el7.x86_64
> libpsm2-compat-0.7-4.el7.x86_64
> libpsm2-compat-devel-0.7-4.el7.x86_64
> libpsm2-devel-0.7-4.el7.x86_64
>
> I added --with-psm2 to my configure, but it failed:
>
> --- MCA component mtl:psm2 (m4 configuration macro)
> checking for MCA component mtl:psm2 compile mode... static
> checking --with-psm2 value... simple ok (unspecified)
> checking --with-psm2-libdir value... simple ok (unspecified)
> checking psm2.h usability... yes
> checking psm2.h presence... yes
> checking for psm2.h... yes
> looking for library without search path
> checking for library containing psm2_mq_irecv2... no
> configure: error: PSM2 support requested but not found.  Aborting
> error: Bad exit status from /var/tmp/rpm-tmp.TLxu8O (%build)
>
>
>
>
>
> /usr/lib64/libpsm2.so is on the system though.
>
>
>
> What else libraries do I need for psm2?
>
>
>
> Thank you!
>
>
>
>
> __

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

[Limin Gu]

Thanks Gilles!


Limin

On Tue, Oct 11, 2016 at 9:33 PM, Gilles Gouaillardet <gil...@rist.or.jp>
wrote:

> Limin,
>
>
> It seems libpsm2 provided by Centos 7 is a bit too old
>
> all symbols are prefixed with psm_, and Open MPI expect they are prefixed
> with psm2_
>
> i am afraid your only option is to manually install the latest libpsm2 and
> then configure again with your psm2 install dir
>
>
> Cheers,
>
> Gilles
>
>
> On 10/12/2016 9:57 AM, Limin Gu wrote:
>
> Hi MAC,
>
> It seems /usr/lib64/libpsm2.so.2 has no symbols. Can configure check some
> other ways?
>
>
> [root@uranus ~]# rpm -qi libpsm2-0.7-4.el7.x86_64
>
> Name: libpsm2
>
> Version : 0.7
>
> Release : 4.el7
>
> Architecture: x86_64
>
> Install Date: Tue 11 Oct 2016 05:45:59 PM PDT
>
> Group   : System Environment/Libraries
>
> Size: 400282
>
> License : GPLv2 or BSD
>
> Signature   : RSA/SHA256, Wed 25 Nov 2015 07:02:20 AM PST, Key ID
> 24c6a8a7f4a80eb5
>
> Source RPM  : libpsm2-0.7-4.el7.src.rpm
>
> Build Date  : Fri 20 Nov 2015 08:05:13 AM PST
>
> Build Host  : worker1.bsys.centos.org
>
> Relocations : (not relocatable)
>
> Packager: CentOS BuildSystem <http://bugs.centos.org>
>
> Vendor  : CentOS
>
> URL : http://www.intel.com/
>
> Summary : Intel PSM Libraries
>
> Description :
>
> The PSM Messaging API, or PSM API, is Intel's low-level
>
> user-level communications interface for the Truescale
>
> family of products. PSM users are enabled with mechanisms
>
> necessary to implement higher level communications
>
> interfaces in parallel environments.
>
> [root@uranus ~]# objdump -p /usr/lib64/libpsm2.so.2 |grep SONAME
>
>   *SONAME*   libpsm2.so.2
>
> [root@uranus ~]# nm /usr/lib64/libpsm2.so.2
>
> nm: /usr/lib64/libpsm2.so.2: no symbols
>
> [root@uranus ~]#
>
>
> Thanks!
> Limin
>
>
> On Tue, Oct 11, 2016 at 7:00 PM, Cabral, Matias A <
> matias.a.cab...@intel.com> wrote:
>
>> Hi  Limin,
>>
>>
>>
>> psm2_mq_irecv2 should be in libpsm2.so.  I’m not quite sure how CentOS
>> packs it so I would like a little more info about the version being used.
>> Some things to share:
>>
>>
>>
>> >rpm -qi libpsm2-0.7-4.el7.x86_64
>>
>> > objdump –p /usr/lib64/libpsm2.so |grep SONAME
>>
>> >nm /usr/lib64/libpsm2.so |grep psm2_mq_irecv2 (will not work if the lib
>> Stripped)
>>
>>
>>
>>
>>
>> Thanks,
>>
>> _MAC
>>
>>
>>
>> *From:* users [mailto:users-boun...@lists.open-mpi.org] *On Behalf Of *Limin
>> Gu
>> *Sent:* Tuesday, October 11, 2016 2:58 PM
>> *To:* Open MPI Users <users@lists.open-mpi.org>
>> *Subject:* [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS
>> 7.2
>>
>>
>>
>> Hi All,
>>
>> I am trying to build openmpi 2.0.1 on a CentOS 7.2 system, and I have
>> following libpsm2 packages installed:
>>
>> libpsm2-0.7-4.el7.x86_64
>> libpsm2-compat-0.7-4.el7.x86_64
>> libpsm2-compat-devel-0.7-4.el7.x86_64
>> libpsm2-devel-0.7-4.el7.x86_64
>>
>> I added --with-psm2 to my configure, but it failed:
>>
>> --- MCA component mtl:psm2 (m4 configuration macro)
>> checking for MCA component mtl:psm2 compile mode... static
>> checking --with-psm2 value... simple ok (unspecified)
>> checking --with-psm2-libdir value... simple ok (unspecified)
>> checking psm2.h usability... yes
>> checking psm2.h presence... yes
>> checking for psm2.h... yes
>> looking for library without search path
>> checking for library containing psm2_mq_irecv2... no
>> configure: error: PSM2 support requested but not found.  Aborting
>> error: Bad exit status from /var/tmp/rpm-tmp.TLxu8O (%build)
>>
>>
>>
>>
>>
>> /usr/lib64/libpsm2.so is on the system though.
>>
>>
>>
>> What else libraries do I need for psm2?
>>
>>
>>
>> Thank you!
>>
>>
>>
>> ___
>> users mailing list
>> users@lists.open-mpi.org
>> https://rfd.newmexicoconsortium.org/mailman/listinfo/users
>>
>
>
>
> ___
> users mailing 
> listus...@lists.open-mpi.orghttps://rfd.newmexicoconsortium.org/mailman/listinfo/users
>
>
>
> ___
> users mailing list
> users@lists.open-mpi.org
> https://rfd.newmexicoconsortium.org/mailman/listinfo/users
>
___
users mailing list
users@lists.open-mpi.org
https://rfd.newmexicoconsortium.org/mailman/listinfo/users

Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS 7.2

[Limin Gu]

Wonderful, thank you so much MAC!

Limin

On Wed, Oct 12, 2016 at 12:50 PM, Cabral, Matias A <
matias.a.cab...@intel.com> wrote:

> Hi Limin,
>
>
>
> One more detail. I advise to use a stable release:
>
>
>
> https://github.com/01org/opa-psm2/releases
>
>
>
> Regards,
>
>
>
> _MAC
>
>
>
> *From:* users [mailto:users-boun...@lists.open-mpi.org] *On Behalf Of *Limin
> Gu
> *Sent:* Tuesday, October 11, 2016 7:33 PM
>
> *To:* Open MPI Users <users@lists.open-mpi.org>
> *Subject:* Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on
> CentOS 7.2
>
>
>
> Thank you very much, MAC!
>
>
>
> Limin
>
>
>
>
>
>
>
> On Tue, Oct 11, 2016 at 10:15 PM, Cabral, Matias A <
> matias.a.cab...@intel.com> wrote:
>
> Building psm2 should not be complicated (in case you cannot find a newer
> binary):
>
>
>
> https://github.com/01org/opa-psm2
>
>
>
> Note that newer rpm are named hfi1-psm*
>
>
>
>
>
> _MAC
>
>
>
> *From:* users [mailto:users-boun...@lists.open-mpi.org] *On Behalf Of *Limin
> Gu
> *Sent:* Tuesday, October 11, 2016 6:44 PM
> *To:* Open MPI Users <users@lists.open-mpi.org>
> *Subject:* Re: [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on
> CentOS 7.2
>
>
>
> Thanks Gilles!
>
>
>
> Limin
>
>
>
> On Tue, Oct 11, 2016 at 9:33 PM, Gilles Gouaillardet <gil...@rist.or.jp>
> wrote:
>
> Limin,
>
>
>
> It seems libpsm2 provided by Centos 7 is a bit too old
>
> all symbols are prefixed with psm_, and Open MPI expect they are prefixed
> with psm2_
>
>
> i am afraid your only option is to manually install the latest libpsm2 and
> then configure again with your psm2 install dir
>
>
> Cheers,
>
> Gilles
>
>
>
> On 10/12/2016 9:57 AM, Limin Gu wrote:
>
> Hi MAC,
>
>
>
> It seems /usr/lib64/libpsm2.so.2 has no symbols. Can configure check some
> other ways?
>
>
>
>
>
> [root@uranus ~]# rpm -qi libpsm2-0.7-4.el7.x86_64
>
> Name: libpsm2
>
> Version : 0.7
>
> Release : 4.el7
>
> Architecture: x86_64
>
> Install Date: Tue 11 Oct 2016 05:45:59 PM PDT
>
> Group   : System Environment/Libraries
>
> Size: 400282
>
> License : GPLv2 or BSD
>
> Signature   : RSA/SHA256, Wed 25 Nov 2015 07:02:20 AM PST, Key ID
> 24c6a8a7f4a80eb5
>
> Source RPM  : libpsm2-0.7-4.el7.src.rpm
>
> Build Date  : Fri 20 Nov 2015 08:05:13 AM PST
>
> Build Host  : worker1.bsys.centos.org
>
> Relocations : (not relocatable)
>
> Packager: CentOS BuildSystem <http://bugs.centos.org>
>
> Vendor  : CentOS
>
> URL : http://www.intel.com/
>
> Summary : Intel PSM Libraries
>
> Description :
>
> The PSM Messaging API, or PSM API, is Intel's low-level
>
> user-level communications interface for the Truescale
>
> family of products. PSM users are enabled with mechanisms
>
> necessary to implement higher level communications
>
> interfaces in parallel environments.
>
> [root@uranus ~]# objdump -p /usr/lib64/libpsm2.so.2 |grep SONAME
>
>   *SONAME*   libpsm2.so.2
>
> [root@uranus ~]# nm /usr/lib64/libpsm2.so.2
>
> nm: /usr/lib64/libpsm2.so.2: no symbols
>
> [root@uranus ~]#
>
>
>
>
>
> Thanks!
>
> Limin
>
>
>
>
>
> On Tue, Oct 11, 2016 at 7:00 PM, Cabral, Matias A <
> matias.a.cab...@intel.com> wrote:
>
> Hi  Limin,
>
>
>
> psm2_mq_irecv2 should be in libpsm2.so.  I’m not quite sure how CentOS
> packs it so I would like a little more info about the version being used.
> Some things to share:
>
>
>
> >rpm -qi libpsm2-0.7-4.el7.x86_64
>
> > objdump –p /usr/lib64/libpsm2.so |grep SONAME
>
> >nm /usr/lib64/libpsm2.so |grep psm2_mq_irecv2 (will not work if the lib
> Stripped)
>
>
>
>
>
> Thanks,
>
> _MAC
>
>
>
> *From:* users [mailto:users-boun...@lists.open-mpi.org] *On Behalf Of *Limin
> Gu
> *Sent:* Tuesday, October 11, 2016 2:58 PM
> *To:* Open MPI Users <users@lists.open-mpi.org>
> *Subject:* [OMPI users] Openmpi 2.0.1 build --with-psm2 failed on CentOS
> 7.2
>
>
>
> Hi All,
>
> I am trying to build openmpi 2.0.1 on a CentOS 7.2 system, and I have
> following libpsm2 packages installed:
>
> libpsm2-0.7-4.el7.x86_64
> libpsm2-compat-0.7-4.el7.x86_64
> libpsm2-compat-devel-0.7-4.el7.x86_64
> libpsm2-devel-0.7-4.el7.x86_64
>
> I added --with-psm2 to my configure, but it failed:
>
> --- MCA component mtl:psm2 (m4 configuration macro)
> c