[QE-users] speed up the phonon calculation of large cells

2020-02-21 Thread sha.liu

Dear experts and developers,

I am calculating the phonon DOS of several large cells (30~90 atoms per 
unit cell). I found the calculation took too much time and if there is 
anything wrong, I need to wait at least I got some results. Could you 
give me some advice on how to speed up the calculation? Also, I found 
for most cases, the phonon calculation can not reach the convergence. 
One of my scf input and ph input is like this:



title = 'Mg2Zn11',
prefix = 'Mg2Zn11',
calculation = 'vc-relax',
restart_mode = 'from_scratch',
pseudo_dir = '../',
outdir = './tmp',
forc_conv_thr = 1d-5,
nstep = 300,
/

ecutwfc = 80.0,
ibrav = 1,
celldm(1) = 16.1581354,
nat = 39,
ntyp = 2,
occupations = 'smearing',
smearing = 'gaussian',
degauss = 0.011,
use_all_frac = .true.
/

/

/

/
ATOMIC_SPECIES
 Mg  24.305  Mg.pbe-spnl-rrkjus_psl.1.0.0.UPF
 Zn  65.409  Zn.pbe-dnl-rrkjus_psl.1.0.0.UPF

ATOMIC_POSITIONS crystal
  Mg0.302470  0.00  0.50
  Mg0.50  0.302470  0.00
  Mg0.00  0.50  0.302470
  Mg0.50  0.697530  0.00
  Mg0.00  0.50  0.697530
  Mg0.697530  0.00  0.50
  Zn0.50  0.50  0.50
  Zn0.229963  0.00  0.00
  Zn0.00  0.229963  0.00
  Zn0.00  0.00  0.229963
  Zn0.00  0.770037  0.00
  Zn0.00  0.00  0.770037
  Zn0.770037  0.00  0.00
  Zn0.159837  0.50  0.00
  Zn0.00  0.159837  0.50
  Zn0.50  0.00  0.159837
  Zn0.00  0.840163  0.50
  Zn0.50  0.00  0.840163
  Zn0.840163  0.50  0.00
  Zn0.218205  0.218205  0.218205
  Zn0.781795  0.781795  0.218205
  Zn0.218205  0.781795  0.781795
  Zn0.218205  0.781795  0.781795
  Zn0.781795  0.218205  0.781795
  Zn0.781795  0.781795  0.781795
  Zn0.218205  0.218205  0.781795
  Zn0.781795  0.218205  0.218205
  Zn0.218205  0.781795  0.218205
  Zn0.50  0.235252  0.341765
  Zn0.341765  0.50  0.235252
  Zn0.235252  0.341765  0.50
  Zn0.764748  0.658235  0.50
  Zn0.341765  0.50  0.764748
  Zn0.764748  0.341765  0.50
  Zn0.658235  0.50  0.235252
  Zn0.658235  0.50  0.764748
  Zn0.235252  0.658235  0.50
  Zn0.50  0.764748  0.658235
  Zn0.50  0.235252  0.658235
  Zn0.50  0.764748  0.341765

K_POINTS automatic
  8 8 8 1 1 1



  tr2_ph=1.0d-16,
  prefix='Mg2Zn11',
  amass(1)= 24.305,
  amass(1)= 65.409,
  outdir='./tmp',
  fildyn='Mg2Zn11.dyn',
  ldisp=.true.,
  nq1=4, nq2=4, nq3=4,
 /


Regards,
Sha Liu
IMDEA Materials Institute
C/Eric Kandel 2, Getafe 28906-Madrid, Spain


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[QE-users] error from fqha.x

2020-01-26 Thread sha.liu

Dear developers and users,

I am using QE to calculate the thermodynamic properties. I already 
calculated the phonon dos. Now I want to used the dos to calculated the 
vibrational entropy. The program seems to be fqha.x. While, I don't know 
what is the input file of fqha.x. The dos file only containing frequency 
and total dos? I use this as the input data, and write the input file 
like:



fqha.phdos # this is dos file
0  # these are temperature
250
500
750
1000



and run like: fqha.x -in *in > qha.out. It stopped and the screen output 
is:


At line 22 of file fqha.f90 (unit = 5, file = 'stdin')
Fortran runtime error: End of file

Error termination. Backtrace:
At line 22 of file fqha.f90 (unit = 5, file = 'stdin')
Fortran runtime error: End of file

Error termination. Backtrace:
At line 22 of file fqha.f90 (unit = 5, file = 'stdin')
Fortran runtime error: End of file

Error termination. Backtrace:
#0  0x7f23872652da in ???
#1  0x7f2387265ec5 in ???
#2  0x7f238726668d in ???
#3  0x7f23873dca33 in ???
#4  0x7f23873dd01a in ???
#5  0x7f23873d9bff in ???
#6  0x7f23873de52c in ???
#7  0x7f23873df4bc in ???
#8  0x55f8ebd6ad95 in fqha
at /home/liusha/Downloads/q-e-qe-6.3/PHonon/PH/fqha.f90:22
#9  0x55f8ebd6ab6e in main
at /home/liusha/Downloads/q-e-qe-6.3/PHonon/PH/fqha.f90:85
--
Primary job  terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
--
At line 22 of file fqha.f90 (unit = 5, file = 'stdin')
Fortran runtime error: End of file

Error termination. Backtrace:
#0  0x7efff13c82da in ???
#1  0x7efff13c8ec5 in ???
#2  0x7efff13c968d in ???
#3  0x7efff153fa33 in ???
#4  0x7efff154001a in ???
#5  0x7efff153cbff in ???
#6  0x7efff154152c in ???
#7  0x7efff15424bc in ???
#8  0x55b18ff93d95 in fqha
at /home/liusha/Downloads/q-e-qe-6.3/PHonon/PH/fqha.f90:22
#9  0x55b18ff93b6e in main
at /home/liusha/Downloads/q-e-qe-6.3/PHonon/PH/fqha.f90:85


The qha.out is :

File containing the dos >>> File containing the dos >>> File containing 
the dos >>> File containing the dos >>>



Could help me?

Best regards,
Sha
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[QE-users] vc-relax not converge and the energy cycles

2019-03-01 Thread sha.liu

Dear Sir,

I am running vc-relax using pw.x. But now, some structures are still not 
converged. The energy and enthalpy are cycling in some values. Please 
tell me why this happen? And how to solve it? Thank you~



 number of scf cycles=  28
 number of bfgs steps=  24

 enthalpy old=-264.9902566026 Ry
 enthalpy new=-264.9902565846 Ry

!total energy  =-264.99025637 Ry
 Harris-Foulkes estimate   =-264.99025637 Ry
 estimated scf accuracy<  1.2E-09 Ry


 number of scf cycles=  29
 number of bfgs steps=  24

 enthalpy old=-264.9902566026 Ry
 enthalpy new=-264.9902563710 Ry

!total energy  =-264.99025656 Ry
 Harris-Foulkes estimate   =-264.99025657 Ry
 estimated scf accuracy<  3.7E-09 Ry

 number of scf cycles=  30
 number of bfgs steps=  24

 enthalpy old=-264.9902566026 Ry
 enthalpy new=-264.9902565625 Ry

!total energy  =-264.99025639 Ry
 Harris-Foulkes estimate   =-264.99025640 Ry
 estimated scf accuracy<  7.5E-09 Ry

 number of scf cycles=  31
 number of bfgs steps=  24

 enthalpy old=-264.9902566026 Ry
 enthalpy new=-264.9902563914 Ry

!total energy  =-264.99025656 Ry
 Harris-Foulkes estimate   =-264.99025656 Ry
 estimated scf accuracy<  3.8E-09 Ry

 number of scf cycles=  32
 number of bfgs steps=  24

 enthalpy old=-264.9902566026 Ry
 enthalpy new=-264.9902565602 Ry

!total energy  =-264.99025640 Ry
 Harris-Foulkes estimate   =-264.99025640 Ry
 estimated scf accuracy<  2.1E-09 Ry

Regards,
Sha
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