Re: [votca] Re: Installing VOTCA on Centos
Hmm, I have not tested fftw 3.3, it must be super new.
Can you post the part of your CMakeError.log, which contains the
actual error message?
Cheers,
Christoph
2011/8/19 Valentina valentina_erast...@yahoo.co.uk:
Ok, the first part works:) but now I am stuck a little further
I have fftw3, shared, version 3.3, just freshly installed
[root@xena fftw-3.3]# find /usr -name '*fftw3*.so' -print
/usr/local/lib/libfftw3.so
/usr/local/lib/libfftw3f.so
/usr/local/lib/libfftw3f_threads.so
I try to compile against it (even giving a path)
[root@xena src]# ./build.sh --dev -DEXTERNAL_BOOST=OFF -
DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so --prefix ${prefix} tools
csg
But it seems not to like my fftw and complains:
cmake -DCMAKE_INSTALL_PREFIX=/opt/votca -DEXTERNAL_BOOST=OFF -
DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so -
DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .
-- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE)
txt2tags not found, help cmake to find it by setting
TXT2TAGS_EXECUTABLE
-- checking for module 'fftw3'
-- package 'fftw3' not found
-- Found FFTW3: /usr/local/lib/libfftw3.so
CMake Error at CMakeModules/FindFFTW3.cmake:43 (message):
Could not find fftw_plan_r2r_1d in /usr/local/lib/libfftw3.so, take
a look
at the error message in /opt/votca/src/tools/CMakeFiles/
CMakeError.log to
find out what was going wrong. If you don't have pkg-config
installed you
will most likely have to set FFTW3_LIBRARY by hand (i.e.
-DFFTW3_LIBRARY='/path/to/libfftw3.so') !
Call Stack (most recent call first):
src/libtools/CMakeLists.txt:11 (find_package)
-- Configuring incomplete, errors occurred!
Is there some trick?
Thank you very much for your continuous help.
V
On Aug 18, 9:39 pm, Valentina valentina_erast...@yahoo.co.uk wrote:
Great, thanks!
I will try it tomorrow:)
V
On Aug 18, 8:10 pm, Christoph Junghans jungh...@votca.org wrote:
Hi Valentina,
it seems you are a bug hunter ;-)
I just found the problem in build.sh, just run ./build.sh --selfupdate
'./build.sh --dev XXX' builds the development version
while './build.sh XXX' builds the stable version.
Cheers,
Christoph
2011/8/18 Valentina valentina_erast...@yahoo.co.uk:
Hello again,
I am currently trying to install VOTCA onto Centos 5.4,
I have mercurial installed cmake.
When running I get the following:
./build.sh --prefix ${prefix} tools csg
This is VOTCA build.sh, version 1.7.1
prefix is '/opt/votca'
Using 5 jobs for make
Working on tools
Doing checkout for tools fromhttps://tools.votca.googlecode.com/hg/
(CTRL-C to stop) 5 4 3 2 1
warning: certificate for tools.votca.googlecode.com can't be verified
(Python too old)
requesting all changes
adding changesets
adding manifests
adding file changes
added 477 changesets with 2608 changes to 1678 files
updating to branch default
1460 files updated, 0 files merged, 0 files removed, 0 files
unresolved
abort: no repository found in '/opt/votca/src' (.hg not found)!
No stable branch found, skipping switching!
We build the stable version of tools, but we are on branch default and
not 'stable'. Please checkout the stable branch with 'hg update
stable' or add --dev option (disable this check with the --no-
branchcheck option)
I also tried putting --no-branchcheck or --dev but it didn't seem to
help.
Thank you very much for your help,
Valentina
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Re: [votca] Re: Installing VOTCA on Centos
I just tested Votca with fftw 3.3 and it works here.
It looks strange to me that in your CMakeError.log it says:
Determining if the function fftw_plan_r2r_1d exists in the /usr/local/
lib/libfftw3f.so failed with the following output:
'libfftw3f.so' is the single precision version of fftw, which we do
not support, Konstantin is working on that:
http://code.google.com/p/votca/issues/detail?id=105
Possible solutions:
-build fftw again (make sure you build the double precision version,
which is actually the default)
$make clean; ./configure --prefix=XXX --enable-shared --disable-float;
make; make install
-disable fftw support with -DWITH_FFTW=OFF, if you do so csg_boltzmann
will lose the ability to calculate autocorrelations.
-have a look at CMakeCache.txt to tweak other options related to fftw.
Cheers,
Christoph
2011/8/19 Valentina valentina_erast...@yahoo.co.uk:
Thank you:
[root@xena src]# more /opt/votca/src/tools/CMakeFiles/CMakeError.log
Determining if the function pthread_create exists in the pthreads
failed with the following output:
Change Dir: /opt/votca/src/tools/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/gmake cmTryCompileExec/fast
/usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make
CMakeFiles/cmTryCompileExec.dir/build
gmake[1]: Entering directory `/opt/votca/src/tools/CMakeFiles/
CMakeTmp'
/usr/local/bin/cmake -E cmake_progress_report /opt/votca/src/tools/
CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec.dir/
CheckFunctionExists.c.o
/usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/
cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/
cmake-2.8/Modul
es/CheckFunctionExists.c
Linking C executable cmTryCompileExec
/usr/local/bin/cmake -E cmake_link_script CMakeFiles/
cmTryCompileExec.dir/link.txt --verbose=1
/usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/
cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec -
rdynamic -lpthr
eads
/usr/bin/ld: cannot find -lpthreads
collect2: ld returned 1 exit status
gmake[1]: *** [cmTryCompileExec] Error 1
gmake[1]: Leaving directory `/opt/votca/src/tools/CMakeFiles/CMakeTmp'
gmake: *** [cmTryCompileExec/fast] Error 2
Determining if the function fftw_plan_r2r_1d exists in the /usr/local/
lib/libfftw3f.so failed with the following output:
Change Dir: /opt/votca/src/tools/CMakeFiles/CMakeTmp
Run Build Command:/usr/bin/gmake cmTryCompileExec/fast
/usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make
CMakeFiles/cmTryCompileExec.dir/build
gmake[1]: Entering directory `/opt/votca/src/tools/CMakeFiles/
CMakeTmp'
/usr/local/bin/cmake -E cmake_progress_report /opt/votca/src/tools/
CMakeFiles/CMakeTmp/CMakeFiles 1
Building C object CMakeFiles/cmTryCompileExec.dir/
CheckFunctionExists.c.o
/usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o
CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/
local/share/cmake-2.8/Mod
ules/CheckFunctionExists.c
Linking C executable cmTryCompileExec
/usr/local/bin/cmake -E cmake_link_script CMakeFiles/
cmTryCompileExec.dir/link.txt --verbose=1
/usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d
CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o
cmTryCompileExec -rdynamic /usr
/local/lib/libfftw3f.so -Wl,-rpath,/usr/local/lib
CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o: In function
`main':
CheckFunctionExists.c:(.text+0x15): undefined reference to
`fftw_plan_r2r_1d'
collect2: ld returned 1 exit status
gmake[1]: *** [cmTryCompileExec] Error 1
gmake[1]: Leaving directory `/opt/votca/src/tools/CMakeFiles/CMakeTmp'
gmake: *** [cmTryCompileExec/fast] Error 2
On Aug 19, 1:47 pm, Christoph Junghans jungh...@votca.org wrote:
Hmm, I have not tested fftw 3.3, it must be super new.
Can you post the part of your CMakeError.log, which contains the
actual error message?
Cheers,
Christoph
2011/8/19 Valentina valentina_erast...@yahoo.co.uk:
Ok, the first part works:) but now I am stuck a little further
I have fftw3, shared, version 3.3, just freshly installed
[root@xena fftw-3.3]# find /usr -name '*fftw3*.so' -print
/usr/local/lib/libfftw3.so
/usr/local/lib/libfftw3f.so
/usr/local/lib/libfftw3f_threads.so
I try to compile against it (even giving a path)
[root@xena src]# ./build.sh --dev -DEXTERNAL_BOOST=OFF -
DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so --prefix ${prefix} tools
csg
But it seems not to like my fftw and complains:
cmake -DCMAKE_INSTALL_PREFIX=/opt/votca -DEXTERNAL_BOOST=OFF -
DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so -
DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON .
-- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE)
txt2tags not found, help cmake to find it by setting
TXT2TAGS_EXECUTABLE
-- checking for module 'fftw3'
-- package 'fftw3' not found
-- Found FFTW3: /usr/local/lib/libfftw3.so
CMake Error at CMakeModules/FindFFTW3.cmake:43
