I just tested Votca with fftw 3.3 and it works here. It looks strange to me that in your CMakeError.log it says: "Determining if the function fftw_plan_r2r_1d exists in the /usr/local/ lib/libfftw3f.so failed with the following output:"
'libfftw3f.so' is the single precision version of fftw, which we do not support, Konstantin is working on that: <http://code.google.com/p/votca/issues/detail?id=105> Possible solutions: -build fftw again (make sure you build the double precision version, which is actually the default) $make clean; ./configure --prefix=XXX --enable-shared --disable-float; make; make install -disable fftw support with -DWITH_FFTW=OFF, if you do so csg_boltzmann will lose the ability to calculate autocorrelations. -have a look at CMakeCache.txt to tweak other options related to fftw. Cheers, Christoph 2011/8/19 Valentina <[email protected]>: > Thank you: > > [root@xena src]# more /opt/votca/src/tools/CMakeFiles/CMakeError.log > Determining if the function pthread_create exists in the pthreads > failed with the following output: > Change Dir: /opt/votca/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast" > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make > CMakeFiles/cmTryCompileExec.dir/build > gmake[1]: Entering directory `/opt/votca/src/tools/CMakeFiles/ > CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /opt/votca/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create -o CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/local/share/ > cmake-2.8/Modul > es/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=pthread_create CMakeFiles/ > cmTryCompileExec.dir/CheckFunctionExists.c.o -o cmTryCompileExec - > rdynamic -lpthr > eads > /usr/bin/ld: cannot find -lpthreads > collect2: ld returned 1 exit status > gmake[1]: *** [cmTryCompileExec] Error 1 > gmake[1]: Leaving directory `/opt/votca/src/tools/CMakeFiles/CMakeTmp' > gmake: *** [cmTryCompileExec/fast] Error 2 > > > Determining if the function fftw_plan_r2r_1d exists in the /usr/local/ > lib/libfftw3f.so failed with the following output: > Change Dir: /opt/votca/src/tools/CMakeFiles/CMakeTmp > > Run Build Command:/usr/bin/gmake "cmTryCompileExec/fast" > /usr/bin/gmake -f CMakeFiles/cmTryCompileExec.dir/build.make > CMakeFiles/cmTryCompileExec.dir/build > gmake[1]: Entering directory `/opt/votca/src/tools/CMakeFiles/ > CMakeTmp' > /usr/local/bin/cmake -E cmake_progress_report /opt/votca/src/tools/ > CMakeFiles/CMakeTmp/CMakeFiles 1 > Building C object CMakeFiles/cmTryCompileExec.dir/ > CheckFunctionExists.c.o > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d -o > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -c /usr/ > local/share/cmake-2.8/Mod > ules/CheckFunctionExists.c > Linking C executable cmTryCompileExec > /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ > cmTryCompileExec.dir/link.txt --verbose=1 > /usr/bin/gcc -DCHECK_FUNCTION_EXISTS=fftw_plan_r2r_1d > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o -o > cmTryCompileExec -rdynamic /usr > /local/lib/libfftw3f.so -Wl,-rpath,/usr/local/lib > CMakeFiles/cmTryCompileExec.dir/CheckFunctionExists.c.o: In function > `main': > CheckFunctionExists.c:(.text+0x15): undefined reference to > `fftw_plan_r2r_1d' > collect2: ld returned 1 exit status > gmake[1]: *** [cmTryCompileExec] Error 1 > gmake[1]: Leaving directory `/opt/votca/src/tools/CMakeFiles/CMakeTmp' > gmake: *** [cmTryCompileExec/fast] Error 2 > > > > > > On Aug 19, 1:47 pm, Christoph Junghans <[email protected]> wrote: >> Hmm, I have not tested fftw 3.3, it must be super new. >> Can you post the part of your CMakeError.log, which contains the >> actual error message? >> >> Cheers, >> >> Christoph >> >> 2011/8/19 Valentina <[email protected]>: >> >> >> >> > Ok, the first part works:) but now I am stuck a little further >> >> > I have fftw3, shared, version 3.3, just freshly installed >> > [root@xena fftw-3.3]# find /usr -name '*fftw3*.so' -print >> > /usr/local/lib/libfftw3.so >> > /usr/local/lib/libfftw3f.so >> > /usr/local/lib/libfftw3f_threads.so >> >> > I try to compile against it (even giving a path) >> > [root@xena src]# ./build.sh --dev -DEXTERNAL_BOOST=OFF - >> > DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so --prefix ${prefix} tools >> > csg >> >> > But it seems not to like my fftw and complains: >> >> > cmake -DCMAKE_INSTALL_PREFIX=/opt/votca -DEXTERNAL_BOOST=OFF - >> > DFFTW3_LIBRARY=/usr/local/lib/libfftw3.so - >> > DCMAKE_INSTALL_RPATH_USE_LINK_PATH=ON . >> > -- Could NOT find TXT2TAGS (missing: TXT2TAGS_EXECUTABLE) >> > txt2tags not found, help cmake to find it by setting >> > TXT2TAGS_EXECUTABLE >> > -- checking for module 'fftw3' >> > -- package 'fftw3' not found >> > -- Found FFTW3: /usr/local/lib/libfftw3.so >> > CMake Error at CMakeModules/FindFFTW3.cmake:43 (message): >> > Could not find fftw_plan_r2r_1d in /usr/local/lib/libfftw3.so, take >> > a look >> > at the error message in /opt/votca/src/tools/CMakeFiles/ >> > CMakeError.log to >> > find out what was going wrong. If you don't have pkg-config >> > installed you >> > will most likely have to set FFTW3_LIBRARY by hand (i.e. >> > -DFFTW3_LIBRARY='/path/to/libfftw3.so') ! >> > Call Stack (most recent call first): >> > src/libtools/CMakeLists.txt:11 (find_package) >> >> > -- Configuring incomplete, errors occurred! >> >> > Is there some trick? >> >> > Thank you very much for your continuous help. >> > V >> >> > On Aug 18, 9:39 pm, Valentina <[email protected]> wrote: >> >> Great, thanks! >> >> >> I will try it tomorrow:) >> >> >> V >> >> >> On Aug 18, 8:10 pm, Christoph Junghans <[email protected]> wrote: >> >> >> > Hi Valentina, >> >> >> > it seems you are a bug hunter ;-) >> >> > I just found the problem in build.sh, just run ./build.sh --selfupdate >> >> >> > './build.sh --dev XXX' builds the development version >> >> > while './build.sh XXX' builds the stable version. >> >> >> > Cheers, >> >> >> > Christoph >> >> >> > 2011/8/18 Valentina <[email protected]>: >> >> >> > > Hello again, >> >> >> > > I am currently trying to install VOTCA onto Centos 5.4, >> >> >> > > I have mercurial installed & cmake. >> >> >> > > When running I get the following: >> >> >> > > ./build.sh --prefix ${prefix} tools csg >> >> > > This is VOTCA build.sh, version 1.7.1 >> >> > > prefix is '/opt/votca' >> >> > > Using 5 jobs for make >> >> > > Working on tools >> >> > > Doing checkout for tools fromhttps://tools.votca.googlecode.com/hg/ >> >> > > (CTRL-C to stop) 5 4 3 2 1 >> >> > > warning: certificate for tools.votca.googlecode.com can't be verified >> >> > > (Python too old) >> >> > > requesting all changes >> >> > > adding changesets >> >> > > adding manifests >> >> > > adding file changes >> >> > > added 477 changesets with 2608 changes to 1678 files >> >> > > updating to branch default >> >> > > 1460 files updated, 0 files merged, 0 files removed, 0 files >> >> > > unresolved >> >> > > abort: no repository found in '/opt/votca/src' (.hg not found)! >> >> > > No stable branch found, skipping switching! >> >> > > We build the stable version of tools, but we are on branch default and >> >> > > not 'stable'. Please checkout the stable branch with 'hg update >> >> > > stable' or add --dev option (disable this check with the --no- >> >> > > branchcheck option) >> >> >> > > I also tried putting --no-branchcheck or --dev but it didn't seem to >> >> > > help. >> >> >> > > Thank you very much for your help, >> >> > > Valentina >> >> >> > > -- >> >> > > You received this message because you are subscribed to the Google >> >> > > Groups "votca" group. >> >> > > To post to this group, send email to [email protected]. >> >> > > To unsubscribe from this group, send email to >> >> > > [email protected]. >> >> > > For more options, visit this group >> >> > > athttp://groups.google.com/group/votca?hl=en. >> >> >> > -- >> >> > Dr. Christoph Junghans >> >> > Votca Core Developer >> >> >> > Web:http://www.votca.org >> >> > -- >> > You received this message because you are subscribed to the Google Groups >> > "votca" group. >> > To post to this group, send email to [email protected]. >> > To unsubscribe from this group, send email to >> > [email protected]. >> > For more options, visit this group >> > athttp://groups.google.com/group/votca?hl=en. >> >> -- >> Dr. Christoph Junghans >> Votca Core Developer >> >> Web:http://www.votca.org > > -- > You received this message because you are subscribed to the Google Groups > "votca" group. > To post to this group, send email to [email protected]. > To unsubscribe from this group, send email to > [email protected]. > For more options, visit this group at > http://groups.google.com/group/votca?hl=en. > > -- Dr. Christoph Junghans Votca Core Developer Web: http://www.votca.org -- You received this message because you are subscribed to the Google Groups "votca" group. To post to this group, send email to [email protected]. To unsubscribe from this group, send email to [email protected]. For more options, visit this group at http://groups.google.com/group/votca?hl=en.
