Re: [Yade-users] [Question #686178]: Compilation Issues on Centos 7
Question #686178 on Yade changed: https://answers.launchpad.net/yade/+question/686178 Status: Open => Solved Daniel Kiracofe confirmed that the question is solved: sorry accidentally posted twice. closing one of them. -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
[Yade-users] [Question #686179]: How to use PSD
New question #686179 on Yade: https://answers.launchpad.net/yade/+question/686179 Hi, I'm trying to generate an assembly with PSD like Fig. 9 in [1] or Fig. 1 in [2]. Firstly, I set distributeMass = True, then, I pick up several point (xi,yi) from Fig. 9 in [1] or Fig. 1 in [2] and make psdSizes=[x1,x2,x3,x4],psdCumm=[0,y2,y3,1]. I am not sure if above mentioned way is correct, especially in terms of the following issues. 1. Should I set distributeMass = True or False. 2. In TriaxialStressController engine during triaxial test simulation[3], internalCompaction is set as True to reach confining pressure by growing particles. I wonder if all the particles are scaled up with the same scalar? Like the scale up in Fig. 1 in [2]? 3. By the way, I'm very curious about how it is achieved in Fig. 9 in [1], the numerical PSD is almostly agreed with experimental PSD, is there no particle growing during the isotropic compaction phase? Thanks a lot. Leonard [1]https://link.springer.com/article/10.1007%2Fs10035-016-0687-0 [2]https://link.springer.com/article/10.1007/s11440-017-0593-6 [3]https://github.com/yade/trunk/blob/master/examples/triax-tutorial/script-session2.py -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
Re: [Yade-users] [Question #686178]: Compilation Issues on Centos 7
Question #686178 on Yade changed:
https://answers.launchpad.net/yade/+question/686178
Description changed to:
Hi I'm contemplating using YADE for a research project. We have a high
performance cluster at my university and I want to run YADE on that.
The cluster uses Centos 7 (it's a little dated I know but that's what
they've got). Trying to compile the code and getting an issue. Here is
the error message:
[ 13%] Building CXX object CMakeFiles/yade.dir/pkg/common/ForceEngine.cpp.o
In file included from /usr/include/boost/random/detail/integer_log2.hpp:19:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/pending/integer_log2.hpp:7:2: error: stray ‘#’ in program
BOOST_HEADER_DEPRECATED("");
^
line-map.c: file "/usr/include/boost/random/detail/large_arithmetic.hpp" left
but not entered
line-map.c: file "/usr/include/boost/random/detail/large_arithmetic.hpp" left
but not entered
line-map.c: file "/usr/include/boost/random/detail/large_arithmetic.hpp" left
but not entered
line-map.c: file "/usr/include/boost/random/detail/const_mod.hpp" left but not
entered
line-map.c: file "/usr/include/boost/random/detail/const_mod.hpp" left but not
entered
line-map.c: file "/usr/include/boost/random/detail/const_mod.hpp" left but not
entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp" left
but not entered
line-map.c: file "/root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp" left
but not entered
line-map.c: file "/root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp" left
but not entered
In file included from /usr/include/boost/random/detail/integer_log2.hpp:19:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/pending/integer_log2.hpp:7:97: note: #pragma message: This
header is deprecated. Use instead.
BOOST_HEADER_DEPRECATED("");
^
In file included from /usr/include/boost/random/detail/integer_log2.hpp:19:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/pending/integer_log2.hpp:7:4: error: expected unqualified-id
before numeric constant
BOOST_HEADER_DEPRECATED("");
^
In file included from /usr/include/boost/random/detail/integer_log2.hpp:21:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/random/detail/disable_warnings.hpp:27:28: error: expected
declaration before end of line
#pragma GCC diagnostic push
^
make[2]: *** [CMakeFiles/yade.dir/pkg/common/ForceEngine.cpp.o] Error 1
make[1]: *** [CMakeFiles/yade.dir/all] Error 2
make: *** [all] Error 2
I tried the 2019.01a release as well as a git clone of the most recent trunk
and both gave the same error.
Looks like some issue related to boost library. I have installed version
1.69 from the RHEL EPEL 7 release repository (again I know thats a
little dated, but its the most recent one available for Centos 7...
would like to avoid compiling boost myself if I have to). GCC version is
4.8.5
For what it's worth, the cmake configuration is here:
-- Found OpenMP_C: -fopenmp
-- Found OpenMP_CXX: -fopenmp
-- Found unsuitable Qt version "" from NOTFOUND
-- Version is set to 2019.01a
-- Could NOT find OpenGL (missing: OPENGL_opengl_LIBRARY OPENGL_glx_LIBRARY
OPENGL_INCLUDE_DIR)
-- GSL using pkgconfig
-- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig
-- PKGCONFIG() indicates that gts is not installed (install the package which
contains gts.pc if you want to support this feature)
FindGTS.cmake: gts-config/pkg-config
[Yade-users] [Question #686177]: Compilation Issues on Centos 7
New question #686177 on Yade:
https://answers.launchpad.net/yade/+question/686177
Hi I'm contemplating using YADE for a research project. We have a high
performance cluster at my university and I want to run YADE on that. The
cluster uses Centos 7 (it's a little dated I know but that's what they've got).
Trying to compile the code and getting an issue. Here is the error message:
[ 13%] Building CXX object CMakeFiles/yade.dir/pkg/common/ForceEngine.cpp.o
In file included from /usr/include/boost/random/detail/integer_log2.hpp:19:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/pending/integer_log2.hpp:7:2: error: stray ‘#’ in program
BOOST_HEADER_DEPRECATED("");
^
line-map.c: file "/usr/include/boost/random/detail/large_arithmetic.hpp" left
but not entered
line-map.c: file "/usr/include/boost/random/detail/large_arithmetic.hpp" left
but not entered
line-map.c: file "/usr/include/boost/random/detail/large_arithmetic.hpp" left
but not entered
line-map.c: file "/usr/include/boost/random/detail/const_mod.hpp" left but not
entered
line-map.c: file "/usr/include/boost/random/detail/const_mod.hpp" left but not
entered
line-map.c: file "/usr/include/boost/random/detail/const_mod.hpp" left but not
entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp" left
but not entered
line-map.c: file "/root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp" left
but not entered
line-map.c: file "/root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp" left
but not entered
In file included from /usr/include/boost/random/detail/integer_log2.hpp:19:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/pending/integer_log2.hpp:7:97: note: #pragma message: This
header is deprecated. Use instead.
BOOST_HEADER_DEPRECATED("");
^
In file included from /usr/include/boost/random/detail/integer_log2.hpp:19:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/pending/integer_log2.hpp:7:4: error: expected unqualified-id
before numeric constant
BOOST_HEADER_DEPRECATED("");
^
In file included from /usr/include/boost/random/detail/integer_log2.hpp:21:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/random/detail/disable_warnings.hpp:27:28: error: expected
declaration before end of line
#pragma GCC diagnostic push
^
make[2]: *** [CMakeFiles/yade.dir/pkg/common/ForceEngine.cpp.o] Error 1
make[1]: *** [CMakeFiles/yade.dir/all] Error 2
make: *** [all] Error 2
I tried the 2019.01a release as well as a git clone of the most recent trunk
and both gave the same error.
Looks like some issue related to boost library. I have installed version 1.69
from the RHEL EPEL 7 release library (again I know thats a little dated, but
its the most recent one available for Centos 7... would like to avoid compiling
boost myself if I have to). GCC version is 4.8.5
For what it's worth, the cmake configuration is here:
-- Found OpenMP_C: -fopenmp
-- Found OpenMP_CXX: -fopenmp
-- Found unsuitable Qt version "" from NOTFOUND
-- Version is set to 2019.01a
-- Could NOT find OpenGL (missing: OPENGL_opengl_LIBRARY OPENGL_glx_LIBRARY
OPENGL_INCLUDE_DIR)
-- GSL using pkgconfig
-- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig
-- PKGCONFIG() indicates that gts is not installed (install the package which
contains gts.pc if you want to support this feature)
FindGTS.cmake: gts-config/pkg-config gts not found. Please se
[Yade-users] [Question #686178]: Compilation Issues on Centos 7
New question #686178 on Yade:
https://answers.launchpad.net/yade/+question/686178
Hi I'm contemplating using YADE for a research project. We have a high
performance cluster at my university and I want to run YADE on that. The
cluster uses Centos 7 (it's a little dated I know but that's what they've got).
Trying to compile the code and getting an issue. Here is the error message:
[ 13%] Building CXX object CMakeFiles/yade.dir/pkg/common/ForceEngine.cpp.o
In file included from /usr/include/boost/random/detail/integer_log2.hpp:19:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/pending/integer_log2.hpp:7:2: error: stray ‘#’ in program
BOOST_HEADER_DEPRECATED("");
^
line-map.c: file "/usr/include/boost/random/detail/large_arithmetic.hpp" left
but not entered
line-map.c: file "/usr/include/boost/random/detail/large_arithmetic.hpp" left
but not entered
line-map.c: file "/usr/include/boost/random/detail/large_arithmetic.hpp" left
but not entered
line-map.c: file "/usr/include/boost/random/detail/const_mod.hpp" left but not
entered
line-map.c: file "/usr/include/boost/random/detail/const_mod.hpp" left but not
entered
line-map.c: file "/usr/include/boost/random/detail/const_mod.hpp" left but not
entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/usr/include/boost/random/linear_congruential.hpp" left but
not entered
line-map.c: file "/root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp" left
but not entered
line-map.c: file "/root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp" left
but not entered
line-map.c: file "/root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp" left
but not entered
In file included from /usr/include/boost/random/detail/integer_log2.hpp:19:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/pending/integer_log2.hpp:7:97: note: #pragma message: This
header is deprecated. Use instead.
BOOST_HEADER_DEPRECATED("");
^
In file included from /usr/include/boost/random/detail/integer_log2.hpp:19:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/pending/integer_log2.hpp:7:4: error: expected unqualified-id
before numeric constant
BOOST_HEADER_DEPRECATED("");
^
In file included from /usr/include/boost/random/detail/integer_log2.hpp:21:0,
from /usr/include/boost/random/detail/large_arithmetic.hpp:19,
from /usr/include/boost/random/detail/const_mod.hpp:23,
from /usr/include/boost/random/linear_congruential.hpp:30,
from /root/yade_2019.01a/trunk/pkg/common/ForceEngine.cpp:13:
/usr/include/boost/random/detail/disable_warnings.hpp:27:28: error: expected
declaration before end of line
#pragma GCC diagnostic push
^
make[2]: *** [CMakeFiles/yade.dir/pkg/common/ForceEngine.cpp.o] Error 1
make[1]: *** [CMakeFiles/yade.dir/all] Error 2
make: *** [all] Error 2
I tried the 2019.01a release as well as a git clone of the most recent trunk
and both gave the same error.
Looks like some issue related to boost library. I have installed version 1.69
from the RHEL EPEL 7 release library (again I know thats a little dated, but
its the most recent one available for Centos 7... would like to avoid compiling
boost myself if I have to). GCC version is 4.8.5
For what it's worth, the cmake configuration is here:
-- Found OpenMP_C: -fopenmp
-- Found OpenMP_CXX: -fopenmp
-- Found unsuitable Qt version "" from NOTFOUND
-- Version is set to 2019.01a
-- Could NOT find OpenGL (missing: OPENGL_opengl_LIBRARY OPENGL_glx_LIBRARY
OPENGL_INCLUDE_DIR)
-- GSL using pkgconfig
-- WARNING: you are using the obsolete 'PKGCONFIG' macro, use FindPkgConfig
-- PKGCONFIG() indicates that gts is not installed (install the package which
contains gts.pc if you want to support this feature)
FindGTS.cmake: gts-config/pkg-config gts not found. Please se
Re: [Yade-users] [Question #686131]: flow.nCells() != "cell number" recorded by flow.saveVtk()
Question #686131 on Yade changed: https://answers.launchpad.net/yade/+question/686131 Status: Open => Answered Robert Caulk proposed the following answer: Thanks for the clarification. > how many finite cells are produced by the triangulation, 383 or 242? 242 withoutBoundaries (default). Try using flow.saveVTK(withBoundaries=True), the numbers should match. >the particle ids comprising the cell id=0 are 38, 41, 37, 39. Am I wrong? Yes, you are wrong :-) Those are not the particle IDs. Those are redirected IDs for paraview since it needs zero based vertex IDs [1] [1]https://gitlab.com/yade- dev/trunk/blob/master/lib/triangulation/FlowBoundingSphere.ipp#L1690 -- You received this question notification because your team yade-users is an answer contact for Yade. ___ Mailing list: https://launchpad.net/~yade-users Post to : yade-users@lists.launchpad.net Unsubscribe : https://launchpad.net/~yade-users More help : https://help.launchpad.net/ListHelp
