Hi,
see Vignette 'Estimation of total copy numbers using the CRMA v2
method (10K-6.0)' under
http://groups.google.com/group/aroma-affymetrix/web
/Henrik
PS. It helps us to help you if you let us know where you got your script from.
On Tue, Sep 1, 2009 at 2:55 AM, sachinkrsac...@gmail.com
On Mon, Aug 31, 2009 at 11:42 PM, ssvssv@gmail.com wrote:
Hi Henrik
Here are the links:
1)
http://groups.google.com/group/aroma-affymetrix/web/total-copy-number-analysis-6-0
Under Identification of copy-number regions
cbs - CbsModel(ces1, ces2)
From the vignette and section your
On Tue, Sep 1, 2009 at 7:53 AM, Henrik
Bengtssonhenrik.bengts...@gmail.com wrote:
On Mon, Aug 31, 2009 at 11:42 PM, ssvssv@gmail.com wrote:
Hi Henrik
Here are the links:
1)
http://groups.google.com/group/aroma-affymetrix/web/total-copy-number-analysis-6-0
Under Identification of
Hi Henrik
That was an inadvertent mistake and I am sorry. I was looking at
another older post ( by title: use a few normal samples as the
reference set ). My doubts were almost cleared with that post and I
had a small doubt. I could not find reply button and i thought
reply to author button is
Hi Lavinia.
I'm hoping that most of this is explained in the MAT Smoothing
section at:
http://groups.google.com/group/aroma-affymetrix/web/promoter-tiling-array
In your case, the IPs would be Treatment (you would make + numbers in
the design matrix) and Inputs would be Control (- numbers in
Hi People,
I have the following sequence of commands:
chipType - GenomeWideSNP_5;
cdfTags - Full,r2;
cdf - AffymetrixCdfFile$byChipType(chipType, tags=cdfTags)
print(cdf)
gi - getGenomeInformation(cdf)
print(gi)
si - getSnpInformation(cdf)
print(si)
acs -
