[aroma.affymetrix] Custom Canine SNP (DogSty06m520431); problem with chr24-39

2010-08-23 Thread Denis
(25), verbose=verbose) 20100823 13:05:15|Generating ChromosomeExplorer report... 20100823 13:05:15| Setting up ChromosomeExplorer report files... 20100823 13:05:15| Copying template files... 20100823 13:05:15| Source path: C:/Programme/R/R-2.11.1/library/ aroma.core/reports/includes 20100823 13:05

Re: [aroma.affymetrix] Custom Canine SNP (DogSty06m520431); problem with chr24-39

2010-08-23 Thread Henrik Bengtsson
24 the analyses aborts with following prompting for e.g. chr25: process(ce, chromosomes=c(25), verbose=verbose) 20100823 13:05:15|Generating ChromosomeExplorer report... 20100823 13:05:15| Setting up ChromosomeExplorer report files... 20100823 13:05:15|  Copying template files... 20100823 13

[aroma.affymetrix] Re: Another Exception: Cannot fit target function to enzyme

2010-08-23 Thread Gene
the fragment lengths are NA: Finished reading CEL file. 20100823 11:06:13| Thetas: num [1:233566, 1] 971 811 1509 1323 486 ... 20100823 11:06:13| (Allele-specific) thetas: num [1:233566, 1] 971 811 1509 1323 486 ... 20100823 11:06:13| Total thetas: num [1:233566] 971 811 1509 1323 486