Hi Henrik,
Thank you very much for your response. However, I tried the following
codes to set the minimal number of marker to 5, but the results I got
still contain segments with only 2 markers ...
cbs = CbsModel(ds);
cbs$.calculateRatios = FALSE;
ce = ChromosomeExplorer(cbs);
Hi,
I'm having problems installing FIRMAGene on my computer either with the
install.packages command in R or with the R Package Installer. I keep
getting the warning message that FIRMAGene is not available. Is there
another location to get this package? Thanks.
R version 2.12.0 (2010-10-15)
Hi,
sorry my mistake. I meant to write that you should pass the
additional arguments to fit() for the CbsModel (not process()), e.g.
cbs - CbsModel(ds);
cbs$.calculateRatios - FALSE;
fit(cbs, chromosomes=1:23, min.width=5, verbose=-10);
This will (explicitly) fit the segmentation model. Have
