Hi Sam,
I am facing similar problems to do FIRMA analysis using Mouse Exon 1.0 ST
Array. Have you solved your problems. My specific questions are :
1) I was trying to use brainarray ensemble custom cdfs. There are three
cdfs corresponding to it, namely ENSG, ENSE and ENST. Which one to use
Hi,
I am trying to detect splicing events with FIRMA using brainarray ensemble
CDFs (
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download.asp#v19
) .
1) Which CDF should I use , ENSG or ENST? I have treid both for mouse. I
have got 27602 and 78520 FIRMA
Hi ,
I have tried to do the same for MoEx10stv1 arrays by combining the
BrainArray ENSE ENSG cdfs. I have used buildCustomCdf.Public.R script
from aroma website. But the resultant cdf only contains 103
units/transcript clusters.
How can I built or use the BrainArray cdfs (or any other
Hi,
I was trying to perform RMA on *Mouse Exon 1.0 ST Array* as described in
aroma website (link http://www.aroma-project.org/replication/RMA) using
custom cdf MoEx-1_0-st-v1,coreR1,A20080718,MR.cdf.gz
