[aroma.affymetrix] Re: Could not loacate CystoScanHD_Array annotation

Addtional information. The file structure is like this, ├── annotationData │ └── chipTypes │ └── CytoScanHD_Array │ ├── CytoScanHD_Array.cdf │ └── NetAffx │ └── CytoScanHD_Array_annot.csv └── rawData └── dataset1 └── CytoScanHD_Array

Re: [aroma.affymetrix] Could not loacate CystoScanHD_Array annotation

genome information for this chip type: CytoScanHD_Array si - getSnpInformation(cdf) 20141215 18:31:41|Defining DChipSnpInformation from chip type... 20141215 18:31:41| Chip type: CytoScanHD_Array 20141215 18:31:41| Version: 20141215 18:31:41| Located pathname: 20141215 18:31:41|Defining

Re: [aroma.affymetrix] Encountered ERROR while extracting chip effects

On Thu, Dec 11, 2014 at 4:52 AM, Rishi Das Roy rishi.das...@gmail.com wrote: Hi Thanks for your reply. I can understand that I can identify alternative splicing through FIRMA more confidently. However I also want to identify differentially expressed genes. I have not find any documentation