Re: [aroma.affymetrix] Filtering in FIRMA

2015-08-14 Thread Henrik Bengtsson
Hi, the fit() method [http://www.aroma-project.org/vignettes/FIRMA-HumanExonArrayAnalysis/] takes argument 'units', which effectively defaults to units = seq_len(nbrOfUnits(cdf)). If you wish to fit only a subset of the units, you can do something like fit(plm, units=c(10:50, 540:800)) If

[aroma.affymetrix] Filtering in FIRMA

2015-08-12 Thread Marijke Van Moerbeke
Hi I noticed that the FIRMA procedure is implemented to work on the raw .CEL files. Is there a way to select only a specific set of units (By this I mean exons) on which FIRMA needs to be performed? And by this to leave out units that are for example not informative? Thanks! -- -- When