Magdalen,
not sure if its supported but we successfully use MUMmer locally (or blast+) to
generate the required comparison files.
Best wishes,
Alex
Van: artemis-users-boun...@sanger.ac.uk [artemis-users-boun...@sanger.ac.uk]
namens Magdalen Lindeberg [m...@cornel
After years of using the "Generate" feature at WebACT
http://www.webact.org/WebACT/generate for generating ACT readable comparison
files, my recent attempts to generate comparisons with this feature have not
been successful (basically, the comparison generator never concludes the job).
Fortuna
Hi Intikhab
Artemis can read in the output from blastall when it is run with the -m 8¹
flag to generate the one line per HSP. It then displays each blast HSP as a
separate feature. The blast needs to be run on the single fasta sequence of
the contigs (rather than a multiple fasta) so that the coo
Hi,
I've got contigs from an assembly where I predicted ORFs and performed
blasts against NR, UNIprot etc and also perfomed interproscans.
Is there a way to correctly load these results into Artemis? I tried loading
all multiple sequences and GFF files with co-ordinates on the genomic
context, it
